mRNA_H-akashiwo_Contig1058.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1058.6.1
Unique NamemRNA_H-akashiwo_Contig1058.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Match: D7G6S7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6S7_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.010e-49
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:   49 SPRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFLACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIERIPGYGEL 339
            +PR ++++WNAVA WS+D+C DTCAICRN+L EPSIE+ A PS NNENG+SI  G C H FH+DCIQRWLK R  CPLCN+ WEF KIERIPGYG L
Sbjct:   30 APRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSL 126
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BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Match: A0A7S3PD50_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD50_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.040e-49
Identity = 67/114 (58.77%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:    1 PHQDEMQSGDACSVEPS-PRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFLACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIERIPGYGEL 339
            P +D  +     + +P+ PR ++++WNAVA WS+D+C DTCAICRN+L EPSIE+ A PS  N+NG+SI  G C H FH+DCIQRWLK R  CPLCN+ W+F KIERIPGYG+L
Sbjct:   15 PAEDSKEESKPAAKDPNAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQL 128
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BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Match: A0A7S2S966_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S966_9STRA)

HSP 1 Score: 161 bits (408), Expect = 4.320e-49
Identity = 64/99 (64.65%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:   43 EPSPRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFLACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIERIPGYGEL 339
            +P PR ++++WNAVA WS+D+C DTCAICRN+L EPSIE+ A PS  N+NG+SI  G C H FH+DCIQRWL+ R  CPLCN+ W+F KIERIPGYG+L
Sbjct:   30 QPPPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLRTRSVCPLCNKEWDFAKIERIPGYGQL 128
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BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Match: A0A7S2Y0P1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0P1_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.480e-49
Identity = 67/104 (64.42%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:   28 DACSVEPSPRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFLACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIERIPGYGEL 339
            DA      PR ++++WNAVA WS+D+C DTCAICRN+L EPSIE+ A PS NNENG+S+  G C H FH+DCIQRWLK R  CPLCN+ WEF KIE+IPGYG L
Sbjct:   15 DAKESSNVPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSVAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIEKIPGYGSL 118
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BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Match: A0A7S1UML7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UML7_9STRA)

HSP 1 Score: 162 bits (411), Expect = 5.270e-49
Identity = 65/98 (66.33%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   46 PSPRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFLACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIERIPGYGEL 339
            P+PR ++++WNAVA WS+D+C DTCAICRN+L EPSIE+ A PS  N+NG+SI  G C H FH+DCIQRWLK R  CPLCN+ W+F KIERIPGYG+L
Sbjct:   71 PAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQL 168
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BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Match: A0A7S1BRM9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BRM9_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.920e-49
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:   22 SGDACSVEPSPRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFLACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIERIPGYGEL 339
            S  A S  P+ R ++++WNAVA WS+D+C DTCAICRN+L EPSIE+ A PS NNENG+SI  G C H FH+DCIQRWLK R  CPLCN+ WE+ KIE+IPG+G L
Sbjct:   38 SDKASSSVPAKRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGACGHVFHLDCIQRWLKTRSVCPLCNKEWEYAKIEKIPGFGSL 143
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BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Match: A0A1Z5J6S6_FISSO (RING-box protein 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6S6_FISSO)

HSP 1 Score: 160 bits (405), Expect = 9.330e-49
Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:   37 SVEPSPRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFLACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIERIPGYGEL 339
            S   +PR ++++WNAVA WS+D+C DTCAICRN+L EPSIE+ A PS  N+NG+SI  G C H FH+DCIQRWLK R  CPLCN+ W+F KIERIPGYG+L
Sbjct:   19 SKPSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQL 119
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BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Match: A0A7S2JW64_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JW64_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.020e-48
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:   31 ACSVEPSPRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFLACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIERIPGYGEL 339
            A S + +PR ++++W AVA WS+D+C DTCAICRN+L EPSIE+ A PS+ N+NG+SI  G C H FH+DCIQRWLK R  CPLCN+ W+F KIERIPGYG++
Sbjct:   20 AKSAKAAPRFEIKKWTAVAMWSWDICADTCAICRNSLNEPSIEYQANPSSTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQI 122
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BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Match: A0A1E7FMU3_9STRA (Ring-box protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMU3_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.130e-48
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1 
Query:    1 PHQDEMQSGDACSVEP----SPRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFLACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIERIPGYGEL 339
            P +D   + +A   +P    +PR ++++WNAVA WS+D+C DTCAICRN+L EPSIE+ A PS  N+NG+SI  G C H FH+DCIQRWLK R  CPLCN+ W+F KIERIPGYG+L
Sbjct:    9 PMEDAPPAKEAAVCKPVGSAAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQL 125
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BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Match: A0A6U3THL3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3THL3_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.360e-48
Identity = 67/118 (56.78%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:   13 EMQSGDACSVEPS---------PRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFLACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIERIPGYGEL 339
            +++  DA + EP          PR ++++WNAVA WS+D+C DTCAICRN+L EPSIE+ A PS  N+NG+SI  G C H FH+DCIQRWL+ R  CPLCN+ W+F KIERIPGYG+L
Sbjct:   14 DVEMSDAAASEPKKKPSKALAPPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLRTRSVCPLCNKEWDFAKIERIPGYGQL 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1058.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6S7_ECTSI2.010e-4969.07RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S3PD50_9STRA3.040e-4958.77Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2S966_9STRA4.320e-4964.65Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2Y0P1_9STRA4.480e-4964.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1UML7_9STRA5.270e-4966.33Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1BRM9_9STRA6.920e-4963.21Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Z5J6S6_FISSO9.330e-4964.36RING-box protein 1 n=2 Tax=Fistulifera solaris Tax... [more]
A0A7S2JW64_9STRA1.020e-4862.14Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A1E7FMU3_9STRA1.130e-4858.12Ring-box protein n=1 Tax=Fragilariopsis cylindrus ... [more]
A0A6U3THL3_9STRA1.360e-4856.78Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1058contigH-akashiwo_Contig1058:74388..74738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6S7
Preferred nameRBX1
PFAMszf-rbx1
Model size351
Max annot lvl2759|Eukaryota
KEGG koko:K03868
KEGG Pathwayko03420,ko04066,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05200,ko05211,map03420,map04066,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05200,map05211
KEGG ModuleM00379,M00380,M00381,M00382,M00383,M00384,M00385,M00386,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000151,GO:0000152,GO:0000165,GO:0000209,GO:0000278,GO:0000715,GO:0001666,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009628,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010265,GO:0010389,GO:0010468,GO:0010498,GO:0010556,GO:0010564,GO:0010604,GO:0010646,GO:0010648,GO:0010948,GO:0010972,GO:0016043,GO:0016055,GO:0016310,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0019788,GO:0019899,GO:0019941,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030111,GO:0030162,GO:0030163,GO:0030178,GO:0030674,GO:0031146,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031334,GO:0031461,GO:0031462,GO:0031463,GO:0031464,GO:0031465,GO:0031466,GO:0031467,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032991,GO:0033554,GO:0033683,GO:0034097,GO:0034450,GO:0034622,GO:0034641,GO:0035361,GO:0035556,GO:0036211,GO:0036293,GO:0036294,GO:0042176,GO:0042221,GO:0042769,GO:0043161,GO:0043170,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043618,GO:0043620,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045116,GO:0045732,GO:0045786,GO:0045862,GO:0045930,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051276,GO:0051603,GO:0051606,GO:0051716,GO:0051726,GO:0060090,GO:0060255,GO:0060828,GO:0061136,GO:0061418,GO:0061630,GO:0061659,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070482,GO:0070498,GO:0070555,GO:0070647,GO:0070887,GO:0070911,GO:0071310,GO:0071345,GO:0071347,GO:0071453,GO:0071456,GO:0071704,GO:0071824,GO:0071840,GO:0080008,GO:0080090,GO:0090090,GO:0090304,GO:0090305,GO:0097602,GO:0140096,GO:0198738,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902749,GO:1902750,GO:1903047,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1905114,GO:1990234,GO:2000058,GO:2000060,GO:2000112,GO:2001141
Exons1
Evalue1.9e-50
EggNOG OGsCOG5194@1|root,KOG2930@2759|Eukaryota
EC2.3.2.32
DescriptionNEDD8 transferase activity
Cds size336
COG categoryDO
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387065.269632-CDS-H-akashiwo_Contig1058:74387..747231681387065.269632-CDS-H-akashiwo_Contig1058:74387..74723Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1058 74388..74723 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387065.2814305-UTR-H-akashiwo_Contig1058:74723..747381681387065.2814305-UTR-H-akashiwo_Contig1058:74723..74738Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1058 74724..74738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1058.6.1prot_H-akashiwo_Contig1058.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1058 74388..74723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1058.6.1

>prot_H-akashiwo_Contig1058.6.1 ID=prot_H-akashiwo_Contig1058.6.1|Name=mRNA_H-akashiwo_Contig1058.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=112bp
MQSGDACSVEPSPRIKVQRWNAVAFWSYDLCPDTCAICRNALLEPSIEFL
ACPSNNNENGISIGHGECNHAFHMDCIQRWLKRRESCPLCNRPWEFIKIE
RIPGYGELYPV*
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mRNA from alignment at H-akashiwo_Contig1058:74388..74738-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1058.6.1 ID=mRNA_H-akashiwo_Contig1058.6.1|Name=mRNA_H-akashiwo_Contig1058.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig1058:74388..74738- (Heterosigma akashiwo CCMP452)
CCACATCAAGATGAGATGCAGTCAGGAGATGCTTGCAGTGTAGAACCTTC
GCCTCGAATCAAGGTCCAGAGATGGAATGCGGTGGCCTTTTGGTCGTATG
ATCTGTGTCCAGACACTTGTGCTATCTGTCGAAATGCCTTGCTTGAGCCC
AGCATTGAGTTCTTAGCCTGTCCATCAAACAACAATGAAAATGGTATTAG
CATTGGCCATGGAGAATGCAATCATGCATTTCATATGGACTGCATTCAAA
GATGGCTGAAAAGGAGGGAGTCTTGTCCTCTGTGCAACAGGCCATGGGAA
TTTATTAAAATTGAACGCATCCCAGGCTATGGAGAGCTCTATCCTGTATG
A
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1058:74388..74738-

>mRNA_H-akashiwo_Contig1058.6.1 ID=mRNA_H-akashiwo_Contig1058.6.1|Name=mRNA_H-akashiwo_Contig1058.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=336bp|location=Sequence derived from alignment at H-akashiwo_Contig1058:74388..74738- (Heterosigma akashiwo CCMP452)
ATGCAGTCAGGAGATGCTTGCAGTGTAGAACCTTCGCCTCGAATCAAGGT
CCAGAGATGGAATGCGGTGGCCTTTTGGTCGTATGATCTGTGTCCAGACA
CTTGTGCTATCTGTCGAAATGCCTTGCTTGAGCCCAGCATTGAGTTCTTA
GCCTGTCCATCAAACAACAATGAAAATGGTATTAGCATTGGCCATGGAGA
ATGCAATCATGCATTTCATATGGACTGCATTCAAAGATGGCTGAAAAGGA
GGGAGTCTTGTCCTCTGTGCAACAGGCCATGGGAATTTATTAAAATTGAA
CGCATCCCAGGCTATGGAGAGCTCTATCCTGTATGA
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