mRNA_H-akashiwo_Contig1058.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1058.4.1
Unique NamemRNA_H-akashiwo_Contig1058.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1058.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1058contigH-akashiwo_Contig1058:64369..66164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size246
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387065.1638298-UTR-H-akashiwo_Contig1058:64368..644681681387065.1638298-UTR-H-akashiwo_Contig1058:64368..64468Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1058 64369..64468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387065.1817968-CDS-H-akashiwo_Contig1058:64468..645701681387065.1817968-CDS-H-akashiwo_Contig1058:64468..64570Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1058 64469..64570 -
1681387065.1903849-CDS-H-akashiwo_Contig1058:66122..661641681387065.1903849-CDS-H-akashiwo_Contig1058:66122..66164Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1058 66123..66164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1058.4.1prot_H-akashiwo_Contig1058.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1058 64469..66164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1058.4.1

>prot_H-akashiwo_Contig1058.4.1 ID=prot_H-akashiwo_Contig1058.4.1|Name=mRNA_H-akashiwo_Contig1058.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=48bp
VGDQPRALAERFLRSHGLSLDFADAIVSTIEARVRQLQQQALLAQEA*
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mRNA from alignment at H-akashiwo_Contig1058:64369..66164-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1058.4.1 ID=mRNA_H-akashiwo_Contig1058.4.1|Name=mRNA_H-akashiwo_Contig1058.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1796bp|location=Sequence derived from alignment at H-akashiwo_Contig1058:64369..66164- (Heterosigma akashiwo CCMP452)
GTGGGCGACCAACCGCGGGCGCTGGCCGAGCGCTTCCTCCGGGTGCGCGC
CCTGCTGTATATACCCCCGTGGACGTCTGTGGTGCCCCGTGCGAAAGAGT
CGTTTGACTTGTCCGCCCAGCAGTGGCGCGATCGGGTGCACCTCCGGTAC
GGGGGGGACCTTCGGGGGCTGCCTGAGAAGCGCGACGATGGATGTGGCAA
GCGCTTCTCCACTGATCATGCTCTCATCTGCATGAAGGGGGGTCTTGTGG
GGTGGGGCCACAACCAGTTCCGGGATGTCATGGGGGAGTTCAGCCGGGCG
GCCTGGAACAACTGCGCCTGGGAGCCGGTGGTGAGGGAGGCGTCGCAACG
GGCCAGGGATGGAGGTAGCGATGGCTTGAGGGCAGATTTTGTGGCGAGGG
GTGTGTGGGAACCTGATAGGGACTGTCTTTTTGATACCCGCACAATACAT
GCTGGCAGCCCTGGACGTGAATCCCAACACATCGCTTACCAGAATGCCCT
CAATACCGCTGCCCGTGAAAAGGTGAGGAGGTACAAGGCTGCTGCGGAAG
AGCGCCGTGCTACTTTCTGCCCCTTGATAGTGACTGTGGAGGGTATTGCC
CACTAGTCCATGCAGGCCTTCCTCAGGCGCATTGCTGCTCGGCTCTCGGC
AAAGTGGCAGAAGCCTCTCTCAACGGTCACCAACTGGGTGCGTGTCCGCG
TGCAGTTCGCGCTCATCAAAGCGGTGGATCTGCGGACCAGGGGCTCCAGG
AAGAGGTGGAGGAGCTCGGGGTTCGAGGATGGCGAGGGGATTGCCGTTCT
CTTCCAGAGATAGTGGGGTGTGCTGTATTCGATGTTCTGTATTGATTTGG
GTTTTGGGATTTCATGTGTAGGTTTTAGTATATTACCACAGGGACATTTG
CATAGATGCAAGGCGTAGTAGGTTGTTTTTGTTTTGATTAAGTTTAACTC
CCATATATAATGTATACAAATATTTTTGTCTACGTAGTACACACCATGCT
TCATGCTCTTCATGGTGCCGGTCGGTCCCCATATCTTTGACCGGTGTTAC
TTTCACGCCTGTGCCGAGATCGCACCGGTCGATACTTGCGGGATAATTCC
GTCAGGCGTGGCGCTTTTTCCGGGTCTAGGGCCGCCTGGTCCGTGTTCAT
TCTCGTTGGCACGTCAACGTTCCCCCGCTAATCGTTCAATTGTTCTTATT
CTCAAATTCGAAGCACTGATGGCGAACCAATCGCGCGCACATCTAACTGT
CGCCAATTCGACATGGCGGGCTCGAACCACCGACCTTGTGCTTCGAACTC
GAACCTTCGAACGATTGAACTATTCCTGGTATATAAATACAGAGAGACAG
ACAGACATGCACATCCATACTTGTCTTTGCCCCTTGTTTTCTGTTCCCCC
CTGTGCATTAATGCACGTGACCAATTTCATGCCGATCTGTTTTTGTGCCA
AATCGCTTGCGAGAATATTAGAAGTAAATATACATTGCTCATCGCATACT
TTTGTTATTTCTTGTCGTGTGTTCCCTACCACATCAATATCCCCCTTTCT
TTTTTCTCCCTCTTCCGTGATGCTGATGGTGGCTGAACTCATAGTCACAT
GGGCTGAGCCTGGACTTTGCAGACGCCATAGTATCCACAATTGAGGCACG
AGTGCGGCAGTTACAGCAGCAGGCACTATTAGCTCAAGAAGCCTAAGATG
GTTACAGGTTGCAGAAGAAGAGGCCTGGGATAGGCCTGGCTGCCCCTCTA
ATTTATTTAGAATAACACGTAAAAATACAACACAACATAATGCAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1058:64369..66164-

>mRNA_H-akashiwo_Contig1058.4.1 ID=mRNA_H-akashiwo_Contig1058.4.1|Name=mRNA_H-akashiwo_Contig1058.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=144bp|location=Sequence derived from alignment at H-akashiwo_Contig1058:64369..66164- (Heterosigma akashiwo CCMP452)
GTGGGCGACCAACCGCGGGCGCTGGCCGAGCGCTTCCTCCGGTCACATGG
GCTGAGCCTGGACTTTGCAGACGCCATAGTATCCACAATTGAGGCACGAG
TGCGGCAGTTACAGCAGCAGGCACTATTAGCTCAAGAAGCCTAA
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