mRNA_H-akashiwo_Contig1057.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1057.11.1
Unique NamemRNA_H-akashiwo_Contig1057.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Match: A0A7S4D9H3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9H3_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 1.100e-22
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEVHKIFSASSVLSAKEV 147
            GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEVHKIFSASSVL AKEV
Sbjct: 1775 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEVHKIFSASSVLGAKEV 1823
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BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Match: A0A7S3XYR3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYR3_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 5.340e-9
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEV 102
            GRLRCLGS Q LKSRFGLGFQLE GL LP+E+E+
Sbjct: 1769 GRLRCLGSAQRLKSRFGLGFQLELGLRLPSEEEL 1802
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BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Match: A0A7R9U8U7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8U7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.870e-7
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEVHKIFSA 120
            GR RCLGS Q LK++FGLG+QLE  L+LP+E+EV  + SA
Sbjct:   74 GRFRCLGSAQRLKTKFGLGYQLEASLKLPSEEEVTALASA 113
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BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Match: A0A7S1UDZ8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDZ8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.840e-7
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEVHKIFSASSV 129
            GR RC+GS QHLK ++GLGF LE  L+LPT DE  ++ S   V
Sbjct:  853 GRFRCIGSAQHLKHKYGLGFSLEAALKLPTHDEGRELASRMGV 895
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BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Match: A0A7S1UG55_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG55_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.850e-7
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEVHKIFSASSV 129
            GR RC+GS QHLK ++GLGF LE  L+LPT DE  ++ S   V
Sbjct: 1219 GRFRCIGSAQHLKHKYGLGFSLEAALKLPTHDEGRELASRMGV 1261
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BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Match: A0A6V1S0H3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S0H3_HETAK)

HSP 1 Score: 52.0 bits (123), Expect = 1.980e-6
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEV 102
            G+LRCLGS QHLKSRFGLG+QLE G    T +E+
Sbjct:  111 GQLRCLGSAQHLKSRFGLGYQLELGARTATAEEL 144
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BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Match: A0A418AMP6_9STRA (ABC transporter domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AMP6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.030e-6
Identity = 26/41 (63.41%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEVHKIFSAS 123
            GRLRCLGS QHLKSRFG GF +   LEL T D +   F AS
Sbjct:  187 GRLRCLGSVQHLKSRFGDGFMVHAKLELATRDAITAFFDAS 227
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BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Match: A0A024TVK3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TVK3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.050e-6
Identity = 26/41 (63.41%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEVHKIFSAS 123
            GRLRCLGS QHLKSRFG GF +   LEL T D +   F AS
Sbjct: 1741 GRLRCLGSVQHLKSRFGDGFMVHAKLELATRDAITAFFDAS 1781
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BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Match: A0A6G0XLC8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XLC8_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.800e-6
Identity = 25/38 (65.79%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    1 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEVHKIF 114
            GRLRCLGS QHLKSRFG GF L   ++LPT D V   F
Sbjct: 1741 GRLRCLGSVQHLKSRFGDGFMLHAKIDLPTTDVVSSFF 1778
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BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Match: A0A7S3QA12_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QA12_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.840e-6
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDE 99
            G+LRCLGS QHLKSRFG G+Q+E  +  PTED+
Sbjct: 1733 GKLRCLGSAQHLKSRFGKGYQVELKVNEPTEDD 1765
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1057.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D9H3_HETAK1.100e-2297.96Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3XYR3_HETAK5.340e-979.41Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7R9U8U7_9STRA1.870e-762.50Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UDZ8_9STRA5.840e-755.81Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1UG55_9STRA5.850e-755.81Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6V1S0H3_HETAK1.980e-667.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A418AMP6_9STRA2.030e-663.41ABC transporter domain-containing protein n=1 Tax=... [more]
A0A024TVK3_9STRA2.050e-663.41Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XLC8_9STRA2.800e-665.79Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3QA12_9STRA3.840e-666.67Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1057contigH-akashiwo_Contig1057:402897..403044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008873619.1
PFAMsABC2_membrane_3,ABC_tran
Model size148
Max annot lvl2759|Eukaryota
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031090,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0098588,GO:0098805,GO:0099120
Exons1
Evalue3.36e-07
EggNOG OGsCOG1131@1|root,KOG0059@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size147
COG categoryV
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387065.1336784-CDS-H-akashiwo_Contig1057:402896..4030431681387065.1336784-CDS-H-akashiwo_Contig1057:402896..403043Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1057 402897..403043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1057.11.1prot_H-akashiwo_Contig1057.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1057 402897..403043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1057.11.1

>prot_H-akashiwo_Contig1057.11.1 ID=prot_H-akashiwo_Contig1057.11.1|Name=mRNA_H-akashiwo_Contig1057.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
GRLRCLGSGQHLKSRFGLGFQLEFGLELPTEDEVHKIFSASSVLSAKEV
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mRNA from alignment at H-akashiwo_Contig1057:402897..403044+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1057.11.1 ID=mRNA_H-akashiwo_Contig1057.11.1|Name=mRNA_H-akashiwo_Contig1057.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=148bp|location=Sequence derived from alignment at H-akashiwo_Contig1057:402897..403044+ (Heterosigma akashiwo CCMP452)
GGTCGACTAAGGTGCCTTGGATCTGGACAGCATCTGAAGTCCAGGTTTGG
GTTGGGCTTTCAATTAGAATTTGGCCTTGAGCTGCCCACTGAAGACGAAG
TTCATAAAATCTTTTCAGCATCATCAGTATTGAGTGCAAAGGAGGTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1057:402897..403044+

>mRNA_H-akashiwo_Contig1057.11.1 ID=mRNA_H-akashiwo_Contig1057.11.1|Name=mRNA_H-akashiwo_Contig1057.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig1057:402897..403044+ (Heterosigma akashiwo CCMP452)
GGTCGACTAAGGTGCCTTGGATCTGGACAGCATCTGAAGTCCAGGTTTGG
GTTGGGCTTTCAATTAGAATTTGGCCTTGAGCTGCCCACTGAAGACGAAG
TTCATAAAATCTTTTCAGCATCATCAGTATTGAGTGCAAAGGAGGTG
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