mRNA_H-akashiwo_Contig1056.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1056.8.1
Unique NamemRNA_H-akashiwo_Contig1056.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Match: UPI0018CFDE0C (uncharacterized protein LOC119665576 n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CFDE0C)

HSP 1 Score: 116 bits (290), Expect = 5.820e-26
Identity = 71/240 (29.58%), Postives = 119/240 (49.58%), Query Frame = 1
Query:    1 RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRYIECCDVCQQFSELRETKSNRSYP-CPSLPFRVMAADFTGVLEHKPFKGAGFKHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSGPSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLMEGVPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLGMRPR 717
            +L +P   R  V+ E H    + H  ++ T +R++  Y WPGM RDVR+Y+  CD CQ+F   ++  +          P+ ++ ADF G L   P    G   +LV +D  +++V L+P RS  T    +A + R++   G+P +F+TD+G  FTS    +F   +G +  Q     +      ER   T+   + +L EG   R++   LP +   + +T +  +G +PA +  G  PR
Sbjct: 1088 KLCIPLHLRQPVLRENHDEPTAGHFGIRKTRQRIANNYYWPGMLRDVRKYVLSCDSCQRFKSSQQAAAGHMLTQLAEEPWAMVCADFVGPL---PRSKRGNNTLLVFIDKFTKWVELIPLRSATTTSVQKAFRERIMARFGIPKIFITDNGTQFTSHAARKFFTQLG-VKQQFTAPYTPQENPTERANRTIKTLVSQLTEG-DQRNWDEYLPEITLAINSTVSETTGFTPAYLNHGREPR 1322          
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Match: UPI001CFC302B (uncharacterized protein LOC123037923 n=1 Tax=Drosophila rhopaloa TaxID=1041015 RepID=UPI001CFC302B)

HSP 1 Score: 115 bits (289), Expect = 7.970e-26
Identity = 73/241 (30.29%), Postives = 118/241 (48.96%), Query Frame = 1
Query:    1 RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRYIECCDVCQQF--SELRETKSNRSYPCPSLPFRVMAADFTGVLEHKPFKGAGFKHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSGPSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLMEGVPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLGMRPR 717
            +L VP ++R  V+EE H    + H  ++ T+ R+   Y WPGM RDVRR++ CC+ CQ+F  S+L+      +   P  PF +++ADF G L   P    G   +LV +D+ S++V ++P R   T     A + R++   G P   + D+G  FTS+ +    +  G +  Q     S      ER   T+   + +       R +   LP +   V ++ +  +G SPA +V G  PR
Sbjct: 1416 KLCVPTEHRRHVLEECHDHPSAGHLGIRKTIRRVGQRYFWPGMHRDVRRHVRCCETCQRFKVSQLKPAGKMLTRR-PEEPFTMVSADFIGPL---PRSRRGNTMLLVFLDVFSKWVEIIPLRKATTAQLELAFRERILSRFGTPRTLICDNGAQFTSRGFKALCKRAG-VQIQYTAPYSPQQNPTERANRTIKTMIAQYTAD-DQRSWDQLLPEISLAVNSSISDSTGFSPAYLVQGREPR 1650          
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Match: Q9XZR7_DROBU (RNA-directed DNA polymerase (Fragment) n=1 Tax=Drosophila buzzatii TaxID=7264 RepID=Q9XZR7_DROBU)

HSP 1 Score: 114 bits (285), Expect = 2.550e-25
Identity = 73/240 (30.42%), Postives = 118/240 (49.17%), Query Frame = 1
Query:    1 RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRYIECCDVCQQFSELR-ETKSNRSYPCPSLPFRVMAADFTGVLEHKPFKGAGFKHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSGPSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLMEGVPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLGMRPR 717
            +L V    R +V++E H  + + H   + T+ R++  Y WPGM RDVR Y++ C+VCQ++   + +         P  P+  + ADF G L   P    G   +LV +D  S++  +VP RS  T    +A + R++   G P V +TD+G  FTS+ +  FL  +G + HQ+    +      ER   TV   + +   G   R +   LP +   V ++ +A +G + A I  G  PR
Sbjct:  776 KLCVSTDRRKQVLKENHDAVTAGHLGSRKTIARVAARYYWPGMYRDVRNYVQRCEVCQRYKPSQLQAAGQMLTQVPEEPWATVCADFVGPL---PRSKHGNTMLLVFIDRFSKWTEMVPLRSANTAALQKAFRERILARFGAPKVLITDNGTQFTSRAFKNFLDELG-VRHQLTAPYTPQENPTERANRTVKTMIAQFA-GSDQRCWDEALPELTLAVNSSVSASTGYTAAFITQGREPR 1010          
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Match: UPI001C933B7C (LOW QUALITY PROTEIN: uncharacterized protein LOC122322550 n=1 Tax=Drosophila grimshawi TaxID=7222 RepID=UPI001C933B7C)

HSP 1 Score: 113 bits (282), Expect = 6.550e-25
Identity = 73/240 (30.42%), Postives = 117/240 (48.75%), Query Frame = 1
Query:    1 RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRYIECCDVCQQFSELRETKSNRSYP-CPSLPFRVMAADFTGVLEHKPFKGAGFKHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSGPSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLMEGVPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLGMRPR 717
            +L VP   R +V+ E H    + H   + T+ R++  Y WPG+ RDVR Y++ C++CQQ+   +   + +     P  P+  + ADF G L   P    G   +LV +D  S++  +VP RS  T    +A + R++   GVP V +TD+G  FTS+    FL  +G I HQ+    +      ER   TV   + +  +    R +   LP +   V  + ++ +G S A +  G  PR
Sbjct:  977 KLCVPTGKRRQVLIENHNTATAGHTCSRKTIARVAARYYWPGLYRDVRAYVQQCEICQQYKPSQMAAAGQMLTKIPEEPWTTVCADFVGPL---PRSTHGNTMLLVFIDRFSKWTEMVPLRSATTATLQKAFRERILARFGVPKVLITDNGTQFTSRALKNFLEEMG-IKHQLTAPYTPQENPTERANRTVKTMIAQFTKDNQRR-WDEALPELTLAVNTSVSSSTGYSAAFVTQGREPR 1211          
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Match: UPI001C891FB8 (LOW QUALITY PROTEIN: uncharacterized protein LOC122319532 n=1 Tax=Drosophila yakuba TaxID=7245 RepID=UPI001C891FB8)

HSP 1 Score: 112 bits (281), Expect = 9.140e-25
Identity = 72/240 (30.00%), Postives = 117/240 (48.75%), Query Frame = 1
Query:    1 RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRYIECCDVCQQFSELRETKSNRSYP-CPSLPFRVMAADFTGVLEHKPFKGAGFKHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSGPSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLMEGVPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLGMRPR 717
            +L VP + R +VM E H    + H   + T+ R++  Y WPGM RDVR+Y+  C+ C ++   +   + +     P  P+  + ADF G L   P    G   +LV++D  S++  +VP R   T    + ++ R++   GVP V +TD+G  FTS+ + +FL  +G + HQ+    +      ER   TV   + +   G   R +    P ++  V  +    +G SPA I  G  PR
Sbjct: 1320 KLCVPTRERQRVMAENHDMPTAGHLGSRKTMARVAARYHWPGMHRDVRKYVRNCESCMKYKPNQLQAAGKMLTQVPEEPWATVCADFVGPL---PRSKHGNSMLLVLVDRFSKWTEIVPMRRATTETLRKDVRERIVARYGVPKVMITDNGVQFTSRAFKRFLGELG-VKHQLTAPYTPQENPTERANRTVKTMIAQFT-GADQRTWDENWPELQLAVNTSVAETTGYSPAFITQGREPR 1554          
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Match: K7EX43_PELSI (Ribonuclease H n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7EX43_PELSI)

HSP 1 Score: 111 bits (278), Expect = 2.180e-24
Identity = 72/240 (30.00%), Postives = 123/240 (51.25%), Query Frame = 1
Query:    1 RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRYIECCDVCQQFSELRETKSNR-SYPCPSLPFRVMAADFTGVLEHKPFKGAGFKHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSGPSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLMEGVPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLGMRPR 717
            +L+VPA++R +V++  H   W+ H   + T++R++  + WPG+ ++VR + E C  CQ+  +    K+     P   +PF  +A D  G LE       G ++I+V++D  +R+   VP ++T      Q L  +V    G+P   LTD G + TSK   +  R +     +      + +G+VER   T+   L + +E  P +D+   LP +   VR  P A +G SP E++ G +PR
Sbjct:  281 QLLVPARFRRRVLDLAHANPWAGHLGREKTLQRITQRFFWPGIYKEVRDFCESCPDCQKTGQGGVPKAPLVPLPVVEVPFDRVALDLVGPLERSR---RGHQYIMVIIDYATRYPEAVPLKNTTASTLAQELV-QVFSRVGIPREILTDQGTNVTSKLMAELCRLLNIKALRTSVYHPQTDGLVERFNRTLKGMLRRFVELDP-KDWDRLLPALLFAVREVPQASTGFSPFELLYGRQPR 515          
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Match: UPI001CF9A61A (uncharacterized protein LOC123037605 n=1 Tax=Drosophila rhopaloa TaxID=1041015 RepID=UPI001CF9A61A)

HSP 1 Score: 110 bits (276), Expect = 4.230e-24
Identity = 74/241 (30.71%), Postives = 119/241 (49.38%), Query Frame = 1
Query:    1 RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRYIECCDVCQQFSELRETKSNRSYP-CPSLPFRVMAADFTGVLEHKPFKGAGFKHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSGPSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLMEGVPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLGMRPRT 720
            +L VP   R +VM E H    + H   + T+ R++  Y WPGM RD+R+Y++ C+ C ++   +   + +     P  P+  + ADF G L   P    G   +LV++D  S++  +VP R   T    +A++ R++   GVP V +TD+G  FTS+ + +FL  +G + HQ     +      ER   TV R + +   G   R +  K P ++ LV NT          E +  +RPRT
Sbjct: 1041 KLCVPTGSRRRVMSENHNSPTAGHMGSRKTISRVAARYHWPGMHRDIRKYVQNCESCLRYKPSQLQAAGKMLTQVPEEPWATVCADFVGPL---PRSKHGNSMLLVLVDRFSKWTEMVPMRRELTESLEKAIRDRILARYGVPKVLITDNGVQFTSRAFKKFLGELG-VRHQFTAPYTPQENPTERANRTVKRMIAQFT-GADQRTWDEKWPELQ-LVVNT---------KEGIRKLRPRT 1266          
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Match: UPI001CF7F0BA (LOW QUALITY PROTEIN: uncharacterized protein LOC123002407 n=1 Tax=Drosophila takahashii TaxID=29030 RepID=UPI001CF7F0BA)

HSP 1 Score: 110 bits (274), Expect = 7.940e-24
Identity = 71/245 (28.98%), Postives = 115/245 (46.94%), Query Frame = 1
Query:    1 RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRYIECCDVCQQFS------ELRETKSNRSYPCPSLPFRVMAADFTGVLEHKPFKGAGFKHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSGPSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLMEGVPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLGMRPR 717
            +L VP + R +V+ E H    + H   + T+ R++  Y WPGM RDVR+Y+  C+ C ++       ++ +         P  P+  + ADF G L   P    G   +LV++D  S++  +VP R   T    +A++ R+I   GVP V +TD+G  FTS+ + +F+  +G + H      +      ER   TV   + +   G   R    K   ++  V  +    +G SPA I  G  PR
Sbjct: 1196 KLCVPTESRKRVISENHDMPTAGHLGSRKTIARVAARYYWPGMHRDVRKYVRNCESCMKYKLQIQEIQILQAAGKMLTQIPEEPWATVCADFVGPL---PRSKHGNSMLLVLVDRFSKWTEIVPMRRATTETLXKAIRERIISRYGVPKVMITDNGVQFTSRAFKKFMEELG-VRHXFTAPYTPQENPTERTNRTVKTMIAQFT-GADQRTCDEKWAGLQLAVNTSVAETTGYSPAFITQGREPR 1435          
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Match: A0A2G8L7I9_STIJA (Integrase catalytic domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L7I9_STIJA)

HSP 1 Score: 107 bits (267), Expect = 1.030e-23
Identity = 74/237 (31.22%), Postives = 115/237 (48.52%), Query Frame = 1
Query:    1 RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRYIECCDVCQQ-FSELRETKSNR-SYPCPSLPFRVMAADFTGVLEHKPFKGAGFKHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSGPSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLMEGVPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLG 705
            ++VVP  YR  V++  H  +   HQ  K T +++   +TWPGM+ DV RY + CDVCQ+   + R TK    S P    PF+ +A D  G +  KP    G ++ILV++D  +R+   VP ++       + L G +    G P   LTD G  F S    +  R +           +  NG+VE+  GT+   L K+ +  P +D+   +  +    R TP   +G SP E++ G
Sbjct:   59 QVVVPVDYRDHVLKVAHESILGGHQGSKKTRDKVMSDFTWPGMQADVTRYCQSCDVCQRTLPKGRVTKVPLGSMPLIEEPFQRVAVDLVGPI--KPATERGHRYILVLVDYATRYPEAVPMKTIEAESVAEELLG-IYSRLGFPKEVLTDQGSQFVSGVMKEVSRLLSIRRLTTTPYHAMCNGLVEKFNGTLKAMLKKMCDERP-KDWDRYIDPLLFAYRETPQESTGFSPFELLYG 291          
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Match: A0A443SAP6_9ACAR (RNA-directed DNA polymerase n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SAP6_9ACAR)

HSP 1 Score: 109 bits (272), Expect = 1.380e-23
Identity = 74/249 (29.72%), Postives = 115/249 (46.18%), Query Frame = 1
Query:    1 RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRYIECCDVCQQFSELRETKSNRSYPCPSLP--------FRVMAADFTGVLEHKPFKGAGFKHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSGPSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLM--EGVPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLGMRPR 717
            +LV+P K R+ +++E H    SAH  V  T  ++   Y WP M+  +R+++ECCDVCQ+      TK +   P   +         F  +A D+ G L   P    G   ILV+ D  ++++   PTR   T   I+ L+  V    G P   ++D+G +F S+ +  FLR           G  ++NG VER+ G     L   M  E  P  ++   L        ++P   +GLSP  ++ G  PR
Sbjct:  705 QLVLPMKDRINILKEYHSSSLSAHIGVVKTYLKIRRKYYWPKMKESIRKFVECCDVCQR------TKDDHKRPIGLMGKHEITAEIFSKIAIDYVGPL---PVSTDGNNQILVIADYATKYIIASPTRDATTESTIRVLRDDVFTKMGPPRELISDNGSAFKSEAFEGFLRRYNVKHTCSTPGLPRSNGQVERLNGAAMTLLRARMQDEKAPAENWDKYLQEAVYGYNSSPHVVTGLSPYFLLHGQEPR 944          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1056.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0018CFDE0C5.820e-2629.58uncharacterized protein LOC119665576 n=1 Tax=Teleo... [more]
UPI001CFC302B7.970e-2630.29uncharacterized protein LOC123037923 n=1 Tax=Droso... [more]
Q9XZR7_DROBU2.550e-2530.42RNA-directed DNA polymerase (Fragment) n=1 Tax=Dro... [more]
UPI001C933B7C6.550e-2530.42LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
UPI001C891FB89.140e-2530.00LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
K7EX43_PELSI2.180e-2430.00Ribonuclease H n=1 Tax=Pelodiscus sinensis TaxID=1... [more]
UPI001CF9A61A4.230e-2430.71uncharacterized protein LOC123037605 n=1 Tax=Droso... [more]
UPI001CF7F0BA7.940e-2428.98LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
A0A2G8L7I9_STIJA1.030e-2331.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A443SAP6_9ACAR1.380e-2329.72RNA-directed DNA polymerase n=1 Tax=Leptotrombidiu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1056contigH-akashiwo_Contig1056:352173..352892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog13735.ENSPSIP00000000353
PFAMsRVT_1,SCAN,rve,zf-CCHC,zf-H2C2
Model size720
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.57e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,48B0V@7711|Chordata,499U9@7742|Vertebrata,4CK8P@8459|Testudines
DescriptionK02A2.6-like
Cds size720
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387065.029378-CDS-H-akashiwo_Contig1056:352172..3528921681387065.029378-CDS-H-akashiwo_Contig1056:352172..352892Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1056 352173..352892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1056.8.1prot_H-akashiwo_Contig1056.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1056 352173..352892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1056.8.1

>prot_H-akashiwo_Contig1056.8.1 ID=prot_H-akashiwo_Contig1056.8.1|Name=mRNA_H-akashiwo_Contig1056.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=240bp
RLVVPAKYRLKVMEEVHGGLWSAHQDVKTTVERLSGMYTWPGMERDVRRY
IECCDVCQQFSELRETKSNRSYPCPSLPFRVMAADFTGVLEHKPFKGAGF
KHILVVMDMMSRFVFLVPTRSTRTVDAIQALKGRVIPFCGVPAVFLTDSG
PSFTSKEWNQFLRGVGCIGHQVPRGASKANGMVERMIGTVHRHLGKLMEG
VPLRDFVHKLPVVETLVRNTPTAPSGLSPAEIVLGMRPRT
back to top

mRNA from alignment at H-akashiwo_Contig1056:352173..352892-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1056.8.1 ID=mRNA_H-akashiwo_Contig1056.8.1|Name=mRNA_H-akashiwo_Contig1056.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=720bp|location=Sequence derived from alignment at H-akashiwo_Contig1056:352173..352892- (Heterosigma akashiwo CCMP452)
CGATTGGTGGTGCCGGCCAAATATCGCTTGAAAGTAATGGAAGAGGTGCA CGGAGGGCTGTGGTCCGCTCACCAAGACGTGAAGACCACGGTGGAACGGC TCAGCGGCATGTATACCTGGCCGGGGATGGAGAGAGACGTGCGAAGGTAC ATCGAATGCTGTGATGTCTGTCAGCAGTTCTCGGAGCTGCGAGAGACTAA GTCCAACCGGTCCTACCCCTGCCCGTCGTTGCCCTTTAGGGTGATGGCAG CCGATTTTACGGGAGTTTTGGAGCACAAACCGTTCAAGGGCGCGGGGTTC AAACACATCTTGGTGGTGATGGATATGATGTCCCGGTTTGTGTTCCTGGT GCCGACGCGCAGCACGAGAACGGTAGACGCAATCCAAGCCCTCAAAGGCC GAGTCATCCCGTTCTGCGGGGTGCCAGCCGTATTCCTGACTGACAGTGGC CCGTCGTTTACGAGCAAGGAGTGGAATCAGTTCCTGCGAGGAGTGGGGTG CATCGGGCACCAGGTGCCTCGAGGGGCGTCCAAGGCTAACGGAATGGTAG AGCGAATGATCGGGACCGTCCACAGACACCTGGGGAAACTAATGGAAGGG GTCCCACTTCGAGACTTTGTACATAAGCTTCCCGTGGTGGAAACCCTGGT GCGCAACACTCCCACGGCCCCGTCGGGGTTATCCCCTGCTGAAATAGTGT TGGGCATGAGGCCAAGGACG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1056:352173..352892-

>mRNA_H-akashiwo_Contig1056.8.1 ID=mRNA_H-akashiwo_Contig1056.8.1|Name=mRNA_H-akashiwo_Contig1056.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=720bp|location=Sequence derived from alignment at H-akashiwo_Contig1056:352173..352892- (Heterosigma akashiwo CCMP452)
CGATTGGTGGTGCCGGCCAAATATCGCTTGAAAGTAATGGAAGAGGTGCA
CGGAGGGCTGTGGTCCGCTCACCAAGACGTGAAGACCACGGTGGAACGGC
TCAGCGGCATGTATACCTGGCCGGGGATGGAGAGAGACGTGCGAAGGTAC
ATCGAATGCTGTGATGTCTGTCAGCAGTTCTCGGAGCTGCGAGAGACTAA
GTCCAACCGGTCCTACCCCTGCCCGTCGTTGCCCTTTAGGGTGATGGCAG
CCGATTTTACGGGAGTTTTGGAGCACAAACCGTTCAAGGGCGCGGGGTTC
AAACACATCTTGGTGGTGATGGATATGATGTCCCGGTTTGTGTTCCTGGT
GCCGACGCGCAGCACGAGAACGGTAGACGCAATCCAAGCCCTCAAAGGCC
GAGTCATCCCGTTCTGCGGGGTGCCAGCCGTATTCCTGACTGACAGTGGC
CCGTCGTTTACGAGCAAGGAGTGGAATCAGTTCCTGCGAGGAGTGGGGTG
CATCGGGCACCAGGTGCCTCGAGGGGCGTCCAAGGCTAACGGAATGGTAG
AGCGAATGATCGGGACCGTCCACAGACACCTGGGGAAACTAATGGAAGGG
GTCCCACTTCGAGACTTTGTACATAAGCTTCCCGTGGTGGAAACCCTGGT
GCGCAACACTCCCACGGCCCCGTCGGGGTTATCCCCTGCTGAAATAGTGT
TGGGCATGAGGCCAAGGACG
back to top