mRNA_H-akashiwo_Contig1056.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1056.6.1
Unique NamemRNA_H-akashiwo_Contig1056.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1056.6.1 vs. uniprot
Match: A0A7S4D5I7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5I7_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 3.730e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 LERQASERVLEQKRSEIAKLELSLTPRSRQAITKIQTESPS 123
            LERQASERVLEQKRSEIAKLELSLTPRSRQAITKIQTESPS
Sbjct:   68 LERQASERVLEQKRSEIAKLELSLTPRSRQAITKIQTESPS 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1056.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D5I7_HETAK3.730e-14100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1056contigH-akashiwo_Contig1056:246127..247475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387064.8332071-CDS-H-akashiwo_Contig1056:246126..2461891681387064.8332071-CDS-H-akashiwo_Contig1056:246126..246189Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1056 246127..246189 +
1681387064.8427043-CDS-H-akashiwo_Contig1056:247217..2472861681387064.8427043-CDS-H-akashiwo_Contig1056:247217..247286Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1056 247218..247286 +
1681387064.8513849-CDS-H-akashiwo_Contig1056:247434..2474731681387064.8513849-CDS-H-akashiwo_Contig1056:247434..247473Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1056 247435..247473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1056.6.1prot_H-akashiwo_Contig1056.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1056 246127..247473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1056.6.1

>prot_H-akashiwo_Contig1056.6.1 ID=prot_H-akashiwo_Contig1056.6.1|Name=mRNA_H-akashiwo_Contig1056.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=57bp
LERQASERVLEQKRSEIAKLELSLTPRSRQAITKIQTESPSTKIELKPTP
KSRDALG
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mRNA from alignment at H-akashiwo_Contig1056:246127..247475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1056.6.1 ID=mRNA_H-akashiwo_Contig1056.6.1|Name=mRNA_H-akashiwo_Contig1056.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1349bp|location=Sequence derived from alignment at H-akashiwo_Contig1056:246127..247475+ (Heterosigma akashiwo CCMP452)
CTGGAGCGGCAGGCCAGCGAGCGCGTCCTGGAGCAGAAGCGCAGCGAGAT
CGCCAAGCTGGAGGTAGGTGCCCCTGCTGCCCCCGGGGGGGATCGCTGGG
GTCGCCGCAACGTACAGTCGTGGTTTTGAATGTGCGATGAAGTGAGCGCG
GGGTGGCAGGGGGGGGGGGGGTCATGGGGTCATACTTATAGGATgGGGGG
AGGGCGACCACAGCACAGTGCGCTTGGGAGCATGGGGTGGGGGGCAGCGC
AATTGAGGCACTTGATGGAGTAAGCAAGAGGTCGTGTGTTCGAGCCCCGC
CAGGATGCAACTCACGACGCTCGCGGTGCTTCGAAATTCGAGAACAGGAA
CAATCGAGAGATTGGTGGGGGAATGTCGACGTGAGACAAGGATGATCACG
GGCCAGAGCGGCCTTAGACCTGGAAATGCGCCGCGCCTGACGGAACTGCC
TCGCGAGTATCGGACCGATGCGGTCTCAGTGAATAACTGCAAAAGAAACA
TCGACTACCAACGATATGGGGACAAACCGTATCATGAAGAACATGATGGT
ACTACGAAGAAAAAAAAACACACATACACACATCAAGGCTGGCGCAAGCC
ATCCTGAAAGCCCCGTCCCTCTTGATGTAGGTATCATTGAGGTTTGGCGC
ACTACGATGAGACTTAACTTTTGTTAGCACCCTCTGCAGTCGCGTGAAAT
TGCATAGTATTATGCACAGTTGCCACGCTTGGTGAAGAGCGCAAGGCCCA
TTTCCGACAAAAACGCGCGTGTGCTCGACAGCTCGCATTACAACATGACC
CCCATCGTGCGCGTGCACCCTTTGTCGCACGATCCCACTGTAAGGGCTTC
AATGAGGTCAGTTGACAGACAGTGCTGATAATGTGTTGAAGAGAGCAGCG
TCGCCCATTTTCGACAAAAACACGCACACCCGGAGTCGAATCACAGACTG
TCTGAAGTGTTTGGATGAAACGATACCAGCTACTAGGTTGATACGATAAT
GCTCGACAGCTCACATTCTAACAATGATTTATCAAAGGGGATGAAGGTTT
AAACTTATACTTTTTTACCTTTTTTCCTCCCTCGATTTCAGCTTTCCCTG
ACCCCAAGATCGCGCCAGGCCATCACCAAAATCCAGACTGAAAGTCCTTC
GACAAAAATTGTGAGGCCTTTCTCCTTTTGCTGCTTCCATGCTCAAAGTA
TTCATAAAAAAAATGAACCTCATGCTTTTTTGGTTCAATCACACTCACAA
TCAATTTAGGGGTGGTGGTTGATTTGTTTCCCTGTTGGTGCATTCCTTTG
TTATACAGGAGCTGAAGCCAACACCAAAATCGCGCGATGCGCTGGGCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1056:246127..247475+

>mRNA_H-akashiwo_Contig1056.6.1 ID=mRNA_H-akashiwo_Contig1056.6.1|Name=mRNA_H-akashiwo_Contig1056.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=171bp|location=Sequence derived from alignment at H-akashiwo_Contig1056:246127..247475+ (Heterosigma akashiwo CCMP452)
CTGGAGCGGCAGGCCAGCGAGCGCGTCCTGGAGCAGAAGCGCAGCGAGAT
CGCCAAGCTGGAGCTTTCCCTGACCCCAAGATCGCGCCAGGCCATCACCA
AAATCCAGACTGAAAGTCCTTCGACAAAAATTGAGCTGAAGCCAACACCA
AAATCGCGCGATGCGCTGGGC
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