mRNA_H-akashiwo_Contig1054.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1054.6.1
Unique NamemRNA_H-akashiwo_Contig1054.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Match: A0A1W0A9G9_9STRA (NUDIX family hydrolase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9G9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.490e-18
Identity = 39/64 (60.94%), Postives = 52/64 (81.25%), Query Frame = 1
Query:   67 SDVEKYLRMNPESQIEILFIKRAVNKRDRWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDLS 258
            + V   LR++ + ++++LFI+RAVN RDRWSGH+AFPGGK++ GET + TAIRE  EEIGLDLS
Sbjct:   27 ASVAAVLRVDGD-RVQLLFIRRAVNPRDRWSGHIAFPGGKAEEGETSVATAIREAHEEIGLDLS 89          
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Match: A0A2T0FCB2_9ASCO (Uncharacterized protein C14C4.10c n=1 Tax=Wickerhamiella sorbophila TaxID=45607 RepID=A0A2T0FCB2_9ASCO)

HSP 1 Score: 85.1 bits (209), Expect = 7.600e-18
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 1
Query:   91 MNPESQIEILFIKRAVNKRDRWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDLSLGFECVAELEAR 294
            ++P +++E+LFIKR V+ RDRWSGH+A PGG+ DPGET I TA+RE +EE+G+DL      V  L+ R
Sbjct:   46 LDPAAELELLFIKRTVDPRDRWSGHIAVPGGRQDPGETDIETAVREAKEEVGIDLEKDGFYVGALDQR 113          
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Match: A0A813HMN9_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HMN9_POLGL)

HSP 1 Score: 77.0 bits (188), Expect = 3.180e-16
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   58 QGLSDVEKYLRMNPESQ--IEILFIKRAVNKRDRWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDLS 258
            Q  + V   LR +P+    +++LFI RA N+RD WSGHVA PGG+ +PGET   TA+RE +EE+GLDL+
Sbjct:    6 QRRASVALILRPSPQDSCGLDVLFILRAANRRDPWSGHVALPGGRQEPGETDEETAVRETREEVGLDLA 74          
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Match: D8LKY4_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY4_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 8.800e-16
Identity = 31/52 (59.62%), Postives = 45/52 (86.54%), Query Frame = 1
Query:  100 ESQIEILFIKRAVNKRDRWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDL 255
            + ++E+L IKRAV+ RD+WSGH+A PGG+ +PGET++ TA+RECQEE+G+ L
Sbjct:   65 DGKVEMLVIKRAVSLRDKWSGHIALPGGRQEPGETELQTAVRECQEEVGISL 116          
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Match: A0A8H7SA83_9FUNG (Nudix hydrolase domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SA83_9FUNG)

HSP 1 Score: 78.2 bits (191), Expect = 3.830e-15
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  100 ESQIEILFIKRAVNKRDRWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDL-SLGFECVAELEAR 294
            +S+ E+LFI+RA    DRWSGHVAFPGGK++PGET   TA RE  EEIGLDL S  F  V  L+AR
Sbjct:   62 DSEPELLFIQRATRATDRWSGHVAFPGGKNEPGETDEQTAERETMEEIGLDLNSSAFLPVGTLDAR 127          
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Match: A0A7S1AJA4_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AJA4_NOCSC)

HSP 1 Score: 74.7 bits (182), Expect = 3.840e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:  106 QIEILFIKRAVNKRDRWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDL 255
            ++E+LFIKRA + RDR+SG VAFPGGK DPGE+ + T IRE QEEIG+DL
Sbjct:   35 ELEMLFIKRAASNRDRFSGDVAFPGGKRDPGESGMQTVIREVQEEIGIDL 84          
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Match: A0A485L640_9STRA (Aste57867_15462 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L640_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.660e-15
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   67 SDVEKYLRMNPESQIEILFIKRAVNKRDRWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDLSLGFECVAELEAR 294
            + V     MN +   E+LFI+RAVN RDRWSGH+AFPGG+ + GET +  A RE  EE+GL L+    C+  L+ R
Sbjct:   31 ASVAMIFHMNDDGVAELLFIRRAVNPRDRWSGHIAFPGGRVEKGETPLEAAHRETMEEVGLSLA-DATCLGHLDDR 105          
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Match: T0S3V0_SAPDV (Nudix hydrolase domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S3V0_SAPDV)

HSP 1 Score: 77.0 bits (188), Expect = 7.030e-15
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   67 SDVEKYLRMNPESQIEILFIKRAVNKRDRWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDLS 258
            + V   LR++ + +I +LFI+RAVN RDRWSG +AFPGGK +  ET + TAIRE +EE+GLDL+
Sbjct:   29 ASVAAVLRVDGD-RIRLLFIRRAVNPRDRWSGQIAFPGGKCEANETSLETAIREAREEVGLDLA 91          
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Match: A0A813EY58_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EY58_POLGL)

HSP 1 Score: 78.2 bits (191), Expect = 8.610e-15
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   58 QGLSDVEKYLRMNPESQ--IEILFIKRAVNKRDRWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDLS--LGFECVAEL 285
            Q  + V   LR +P+    +++LFI RA N+RD WSGHVA PGG+ +PGET   TA+RE +EE+GLDL+    F+C+  +
Sbjct:   32 QRRASVALILRPSPQDSCGLDVLFILRAANRRDPWSGHVALPGGRQEPGETDEETAVRETREEVGLDLADQACFQCLGRM 111          
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Match: A0A1V9YGX4_9STRA (NUDIX hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGX4_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.320e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   67 SDVEKYLRMNPESQIEILFIKRAVNKRDRWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDLSLGFECVAELEAR 294
            + V   LR++ + ++ +LFI+RAVN +DRWSG +AFPGGKS+  ET + TA+RE  EE+GLDL+ G + + +L  R
Sbjct:   28 ASVAAVLRLDGD-RVRLLFIRRAVNPKDRWSGQIAFPGGKSEGNETSLQTAVRETWEEVGLDLN-GADVLGQLNDR 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1054.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W0A9G9_9STRA2.490e-1860.94NUDIX family hydrolase n=1 Tax=Thraustotheca clava... [more]
A0A2T0FCB2_9ASCO7.600e-1854.41Uncharacterized protein C14C4.10c n=1 Tax=Wickerha... [more]
A0A813HMN9_POLGL3.180e-1652.17Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
D8LKY4_ECTSI8.800e-1659.62Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A8H7SA83_9FUNG3.830e-1562.12Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S1AJA4_NOCSC3.840e-1568.00Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A485L640_9STRA4.660e-1548.68Aste57867_15462 protein n=1 Tax=Aphanomyces stella... [more]
T0S3V0_SAPDV7.030e-1556.25Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A813EY58_POLGL8.610e-1547.50Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A1V9YGX4_9STRA1.320e-1448.68NUDIX hydrolase n=1 Tax=Achlya hypogyna TaxID=1202... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1054contigH-akashiwo_Contig1054:266180..267106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008615772.1
PFAMsNUDIX
Model size296
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0016787
Exons3
Evalue1.3e-18
EggNOG OGsCOG0494@1|root,KOG3069@2759|Eukaryota
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-11_006020.1
DescriptionCoA pyrophosphatase activity
Cds size294
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387064.509723-CDS-H-akashiwo_Contig1054:266179..2663441681387064.509723-CDS-H-akashiwo_Contig1054:266179..266344Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1054 266180..266344 +
1681387064.5339093-CDS-H-akashiwo_Contig1054:266740..2668351681387064.5339093-CDS-H-akashiwo_Contig1054:266740..266835Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1054 266741..266835 +
1681387064.5462308-CDS-H-akashiwo_Contig1054:267072..2671061681387064.5462308-CDS-H-akashiwo_Contig1054:267072..267106Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1054 267073..267106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1054.6.1prot_H-akashiwo_Contig1054.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1054 266180..267106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1054.6.1

>prot_H-akashiwo_Contig1054.6.1 ID=prot_H-akashiwo_Contig1054.6.1|Name=mRNA_H-akashiwo_Contig1054.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=98bp
MRIVLPGGESNGRADGFSFQGLSDVEKYLRMNPESQIEILFIKRAVNKRD
RWSGHVAFPGGKSDPGETKIGTAIRECQEEIGLDLSLGFECVAELEAR
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mRNA from alignment at H-akashiwo_Contig1054:266180..267106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1054.6.1 ID=mRNA_H-akashiwo_Contig1054.6.1|Name=mRNA_H-akashiwo_Contig1054.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=927bp|location=Sequence derived from alignment at H-akashiwo_Contig1054:266180..267106+ (Heterosigma akashiwo CCMP452)
ATGCGAATCGTACTGCCAGGGGGCGAGTCAAATGGGAGGGCTGATGGCTT CTCCTTCCAAGGTCTATCTGACGTCGAAAAATATCTTAGAATGAATCCAG AAAGTCAGATCGAGATACTTTTCATAAAAAGGGCAGTGAACAAACGAGAT AGATGGAGTGGACACGTAAGTGGGAACTCTAAATATATGATTGGGTATTG TAAACAAATAAGCTATCATTGCCCCCCGTGTTTATATATATAGCTCTTCT TAGAAAATGGAAGATGCTGCTGCTGGTGGAAAGCAGGGTGCTTCAAACCG CTCCGTATGCCTGAGGGTCTCAGACACCAAGAAGCTGGGGTGAAGGGTGC ATTAGTTTCAGCTGGTGGAGGTGCCGTAAACTTGCTCATTATTCATTTTT TGGATGGTAAGAAAGGTATAGGACGGGAGTAGCGCGTTTAGTAGAGAGGT GGGTGGGGGGTTTTCTGGGAAGGGGGGGCGGGGGGACAACTTGGTAGAGT TCTATGAAAATAACAAATCACTTTATGATGTATGTATTTTTCTTATAAAA CTGCCTGCCAGGTGGCATTTCCTGGTGGTAAAAGTGATCCAGGTGAAACC AAAATTGGTACAGCAATCAGAGAGTGTCAAGAGGAAATTGGCCTTGATCT ATCATTGTAAGAACGAGTCCACATACACTCCTCCCACACACCATGTATGT CTACATATATATTCACACTCAATTTGCTGTGTGCAGTAGTAGCCACTCAT CAAAAATGACCCCCCCGCACGAAACCCCCCCCCCCCCCACCCCTTGTGAG TAGAGAAATATTCCTGCAGGCAATCGCCAAAACATGCAACCGTTTCAAAA AACTTTCATACTTTCACAACAAGATCATTGACGTATTGTGCAGGGGTTTT GAGTGTGTTGCGGAACTGGAGGCAAGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1054:266180..267106+

>mRNA_H-akashiwo_Contig1054.6.1 ID=mRNA_H-akashiwo_Contig1054.6.1|Name=mRNA_H-akashiwo_Contig1054.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=294bp|location=Sequence derived from alignment at H-akashiwo_Contig1054:266180..267106+ (Heterosigma akashiwo CCMP452)
ATGCGAATCGTACTGCCAGGGGGCGAGTCAAATGGGAGGGCTGATGGCTT
CTCCTTCCAAGGTCTATCTGACGTCGAAAAATATCTTAGAATGAATCCAG
AAAGTCAGATCGAGATACTTTTCATAAAAAGGGCAGTGAACAAACGAGAT
AGATGGAGTGGACACGTGGCATTTCCTGGTGGTAAAAGTGATCCAGGTGA
AACCAAAATTGGTACAGCAATCAGAGAGTGTCAAGAGGAAATTGGCCTTG
ATCTATCATTGGGTTTTGAGTGTGTTGCGGAACTGGAGGCAAGA
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