mRNA_H-akashiwo_Contig1053.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1053.4.1
Unique NamemRNA_H-akashiwo_Contig1053.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Match: A0A7S3UW36_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW36_HETAK)

HSP 1 Score: 253 bits (646), Expect = 1.680e-75
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1
Query:    1 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYVVDAYGEFDSSEDTTD 369
            HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYVVDAYGEFDSSEDTTD
Sbjct:  615 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYVVDAYGEFDSSEDTTD 737          
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Match: A0A067C6U5_SAPPC (Lipase_3 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C6U5_SAPPC)

HSP 1 Score: 109 bits (272), Expect = 3.300e-23
Identity = 61/119 (51.26%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEA---IQYVVDAYGEFD 348
            HSLGG MA++ GA +   A+SFSGPGL +S  RF I ++ + +YV  +KPQ D+VPRVD   G V DI C    N L CHG S  A  LY  CGD RGRDWS+A   I YV +  G  D
Sbjct:  643 HSLGGAMAAMVGAATKSPAISFSGPGLVFSRGRFHINEEDVRDYVVTIKPQNDIVPRVDVLGGLVQDIECR-KNNPLFCHGSSTHACELYMTCGDKRGRDWSQAKQCIPYVQNPSGRTD 760          
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Match: A0A1V9YXA5_9STRA (Lipase_3 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXA5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.790e-22
Identity = 56/108 (51.85%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYV 324
            HSLGG MA++ GA +   A+SFSGPGL ++  RF I ++ + +YV  +KPQ D+VPRVD   G V DI C    N L CHG S  A  LY  CGD RGRDWS+A Q +
Sbjct:  653 HSLGGAMAAMVGAATKSPAISFSGPGLVFTRGRFHIREEDVRDYVVTIKPQNDIVPRVDVLGGLVQDIECRKD-NPLFCHGSSTHACELYMTCGDKRGRDWSQAKQCI 759          
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Match: A0A1W0AAE4_9STRA (Lipase_3 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAE4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 9.380e-22
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    1 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYVVDAY 336
            HSLGG MA++ GA +   A+SFSGPGL ++  RF I +  + +YV  +KP+ D+VPRVD   G V +I C    N L CHG S  A  LY  CGD RGRDWS+A Q + + Y
Sbjct:  651 HSLGGAMAAMIGAATKSPAISFSGPGLVFTRSRFHIEEQDVRDYVVTIKPENDIVPRVDVLGGLVQEIECRKD-NPLFCHGSSTHACELYMTCGDSRGRDWSQAQQCLTNKY 761          
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Match: A0A3M6VP93_9STRA (Lipase_3 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VP93_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.790e-20
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYVV-DAYGEFDSSEDT 363
            HSLGG +A++ GA +   AVSFSGPGL +SV RF IT   + +YV  +KP+ D+VP+VDE  G V +I C  + + + CH  S     LY +CGDPR R+WS   Q +  +A    D+ EDT
Sbjct:  798 HSLGGSIAAMIGAKTKTSAVSFSGPGLLYSVGRFDITSRDVRDYVLTMKPRKDIVPQVDELGGLVQEIRCKKS-SPMGCHSTSTHLCELYFSCGDPRQRNWSTNKQCIAYNALTSDDNDEDT 918          
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Match: A0A329SXZ9_9STRA (Lipase_3 domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A329SXZ9_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.930e-20
Identity = 55/123 (44.72%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYVVDAYGEFDSSEDTTD 369
            HSLGG +A++ GA +   AVSFSGPGL +S+ RF IT   + +YV  +KP+ D+VP+VDE  G V +I C  + + + CH  S     LY +CGDPR R+WS   Q +  AY    S  D  D
Sbjct:  799 HSLGGAIAAMIGAKTKTSAVSFSGPGLLYSLGRFDITAQDVRDYVLTMKPRKDIVPQVDELGGLVQEIRCKKS-SPMGCHSTSTHLCELYFSCGDPRQRNWSTNQQCI--AYNALASDNDDND 918          
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Match: A0A6A3UUQ1_9STRA (Lipase_3 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UUQ1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.940e-20
Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYVVDAYGEFDSSEDTTD 369
            HSLGG +A++ GA +   AVSFSGPGL +S+ RFGIT   + +YV  +KP+ D+VP+VDE  G V +I C  + + + CH  S     LY +CGDPR R+W+   Q +  AY +  S ++  D
Sbjct:  804 HSLGGAIAAMIGAKTKTSAVSFSGPGLLYSLGRFGITSRDVRDYVLTMKPRKDIVPQVDELGGLVQEIRCKKS-SPMGCHSTSTHLCELYFSCGDPRQRNWATNQQCI--AYDKLASDDNDDD 923          
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Match: D0N2Y3_PHYIT (Lipase_3 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N2Y3_PHYIT)

HSP 1 Score: 99.0 bits (245), Expect = 8.240e-20
Identity = 54/123 (43.90%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYVVDAYGEFDSSEDTTD 369
            HSLGG +A++ GA +   AVSFSGPGL +S+ RF IT   + +YV  +KP+ D+VP+VDE  G V +  C  + + + CH  S     LY +CGDPR R+WS   Q +  AY    S +D  D
Sbjct:  381 HSLGGAIAAMIGAKTKTSAVSFSGPGLLYSLGRFDITAQDVRDYVLTMKPRKDIVPQVDELGGMVQEFRCKKS-SPMGCHSTSTHLCELYFSCGDPRQRNWSTNQQCI--AYNALPSDDDDDD 500          
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Match: A0A0W8DQ27_PHYNI (Lipase_3 domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DQ27_PHYNI)

HSP 1 Score: 99.4 bits (246), Expect = 1.010e-19
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYVVDAYGEFDSSED 360
            HSLGG +A++ GA +   AVSFSGPGL +S+ RF IT   + +YV  +KP+ D+VP+VDE  G V +I C  + + + CH  S     LY +CGDPR R+WS   Q +  AY    S +D
Sbjct: 1156 HSLGGAIAAMIGAKTKTSAVSFSGPGLLYSLGRFDITAQDVRDYVLTMKPRKDIVPQVDELGGLVQEIRCKKS-SPMGCHSTSTHLCELYFSCGDPRQRNWSTNQQCI--AYNALPSDDD 1272          
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Match: A0A421H3P3_9STRA (Lipase_3 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421H3P3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.110e-19
Identity = 54/123 (43.90%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 HSLGGGMASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVPRVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQYVVDAYGEFDSSEDTTD 369
            HSLGG +A++ GA +   AVSFSGPGL +S+ RF I+   + +YV  +KP+ D+VPRVDE  G V +I C    + + CH  S     LY +CGDPR R+WS   + +   YG   S +D  D
Sbjct:  525 HSLGGAIAAMIGAKTKTSAVSFSGPGLLYSLGRFDISAQDVRDYVLTMKPRKDIVPRVDELGGLVQEIRCKRP-SPMGCHSTSTHLCELYFSCGDPRQRNWSTNEKCIE--YGNLPSGDDDDD 644          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1053.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UW36_HETAK1.680e-75100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A067C6U5_SAPPC3.300e-2351.26Lipase_3 domain-containing protein n=2 Tax=Saprole... [more]
A0A1V9YXA5_9STRA2.790e-2251.85Lipase_3 domain-containing protein n=1 Tax=Achlya ... [more]
A0A1W0AAE4_9STRA9.380e-2249.11Lipase_3 domain-containing protein n=1 Tax=Thraust... [more]
A0A3M6VP93_9STRA2.790e-2045.90Lipase_3 domain-containing protein n=2 Tax=Peronos... [more]
A0A329SXZ9_9STRA6.930e-2044.72Lipase_3 domain-containing protein n=10 Tax=Phytop... [more]
A0A6A3UUQ1_9STRA6.940e-2043.90Lipase_3 domain-containing protein n=2 Tax=Phytoph... [more]
D0N2Y3_PHYIT8.240e-2043.90Lipase_3 domain-containing protein n=1 Tax=Phytoph... [more]
A0A0W8DQ27_PHYNI1.010e-1945.00Lipase_3 domain-containing protein n=1 Tax=Phytoph... [more]
A0A421H3P3_9STRA1.110e-1943.90Lipase_3 domain-containing protein n=3 Tax=Phytoph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1053contigH-akashiwo_Contig1053:175166..177121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008613490.1
PFAMsLipase_3
Model size832
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K17900
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04138,map00561,map01100,map04138
KEGG ModuleM00098
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.39e-23
EggNOG OGs2DUDU@1|root,2QU5M@2759|Eukaryota
EC3.1.1.3
DescriptionLipase (class 3)
Cds size354
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387063.9236243-UTR-H-akashiwo_Contig1053:175165..1756251681387063.9236243-UTR-H-akashiwo_Contig1053:175165..175625Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1053 175166..175625 -
1681387063.9737508-UTR-H-akashiwo_Contig1053:177103..1771211681387063.9737508-UTR-H-akashiwo_Contig1053:177103..177121Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1053 177104..177121 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387063.9341369-CDS-H-akashiwo_Contig1053:175625..1757471681387063.9341369-CDS-H-akashiwo_Contig1053:175625..175747Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1053 175626..175747 -
1681387063.9436276-CDS-H-akashiwo_Contig1053:176271..1764071681387063.9436276-CDS-H-akashiwo_Contig1053:176271..176407Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1053 176272..176407 -
1681387063.9604695-CDS-H-akashiwo_Contig1053:177007..1771031681387063.9604695-CDS-H-akashiwo_Contig1053:177007..177103Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1053 177008..177103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1053.4.1prot_H-akashiwo_Contig1053.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1053 175626..177103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1053.4.1

>prot_H-akashiwo_Contig1053.4.1 ID=prot_H-akashiwo_Contig1053.4.1|Name=mRNA_H-akashiwo_Contig1053.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=118bp
MASLAGATSAVKAVSFSGPGLYWSVDRFGITQDALEEYVTIVKPQYDLVP
RVDENDGTVADINCPYAYNYLACHGISLTAVTLYENCGDPRGRDWSEAIQ
YVVDAYGEFDSSEDTTD*
back to top

mRNA from alignment at H-akashiwo_Contig1053:175166..177121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1053.4.1 ID=mRNA_H-akashiwo_Contig1053.4.1|Name=mRNA_H-akashiwo_Contig1053.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1956bp|location=Sequence derived from alignment at H-akashiwo_Contig1053:175166..177121- (Heterosigma akashiwo CCMP452)
CACAGCCTGGGCGGCGGTATGGCCTCGCTGGCGGGCGCCACGAGCGCGGT GAAGGCGGTCAGTTTCTCGGGGCCGGGCCTTTACTGGAGCGTGGACCGCT TCGGGATCACCCAGGTGCCGCCCTCGCATTGGCCAATCAATATATATATA TATATGTGTGTGTGTGTGTGTGTGTGTGTGTACACAATACGATGGGGCCT CTTGCCGCTGCGTTGACAGCTCCGGGCACATGGTCGTGCGCCAGACTCAC TAACTCAAATGCCGACATCATTTCTTCACCTCCGCATCGCCATTAAAAAA TAATAATTAACTGACCACCTAGAAAACAAGCTGGCTGTTTGTATACGAAT ATGAGTATGTTGTAGCACCTGTGTGTACATGTATTCATTTGAATGCAGAT AGATTTTTCGAAACATATCTACAGGCGTAATATATTCGGGACATTTCTTC AACAGTCTTGCTGGTGGGTTTGAACTCTTCATACATTGCAGGAAAGTAGC CTTCTGCTTCAGTGCTGCTCAATGTGGCGCCTCCATCACCAGTGCATTTA TCAAGAAGGAAAGGATTCCCTACCTTTTTTGTTCTCGGTGTTTCCTTCAT CAACGATCAACATCATTCTAGTGTGACACTAGTACAAGCAAACTTTGCTT AGGGCAAGGTCTAGTCTTGACCAGCCCCTGCCCGCCGCCGCCCCTTCCCC CGGCCTTCCCTCAGGACGCTTTGGAGGAGTACGTGACGATCGTGAAGCCC CAGTACGACCTGGTGCCCAGGGTGGACGAGAACGACGGCACCGTGGCCGA CATCAACTGCCCCTACGCGTACAACTACCTTGCGTGCCACGGGATCTCCC GTGAGTATATATGCAGTTGGGCGGCGTGGGCCCCCGCCCTTCCTATCATA GGCCGCTTGGCCTCTTGTCGTGGCATTGAGCATTTAGCCACCAGGCCACA TGCGCTCTTAAAATTTAAATTTTTAAATAGATCTTAACAACTGAAAAGTG CTTCGCGCAGCCACTGTTTATCGTGTGTTGAATTGTAGGCTTGTGAAGCC CTGTTTGGTGGTAGTCAACTAGTCAATATCATGATGTAATATTATTATGG GTTCTCGCTCCCACCGATTTTGCTGTCCCTGCCTTTTTTGTCAGTTTGAC CTTTTGAAAGACGATTCATTGCTATATATATGTTTAACTTGATGAATAGC ATCTTGCCAGACCTATGATTTGATATTTGATGGAAGCACACAAATCCAAC CAAGGCGGCTATATAGCTCATCGAAGTGGATCGAAGGGGTTCCAAATATA ATATAATGGAAAGCTCCTCCGGGTAGTGTTTGTCAATGATACTCTTCCCT TTCACACCCTCTTTTCTTTTGTAGTGACTGCTGTTACTCTGTACGAGAAC TGTGGAGACCCCCGCGGCCGTGACTGGAGTGAGGCCATCCAGTATGTCGT TGATGCCTATGGCGAATTTGACTCTTCTGAAGACACCACAGACTAAATTG GTGATACTTATGTATTTGCTGGTGATGAAATTGATAAAGTTGTGCAGCAG CAAATATGCAGCCAGGGATTGGTTTTTTATCTATTATTGATAATAAGTAT ATGGGGAGTTGTTGAGAAAGGTATGAGAAGTTGTACCACATCACCATTCA GACAACTATTTGACATCCATATCACTAATGACTAAGTGGTGTGTTGTTGG TTATTTTTTCTATCACATAACACACTAGTTGTTTGCTGCTGTTAAAAACC TATCGGCTGTTTTGCCATATTTTGTGTTGGTAGCAGTATTAATGAACAAA GGAGAAATGGAGAAGAACAAATTCCATAGTAAGCATAGTTGTTGGTAGCA GTAATTATGAACAAAGGAGAAAGAGAAGAATAATCTATAGTGAGCATAGT TCTTATATTCCTACTTCAGTGCAAGAAGGACCTGGCAAAGAACGCTGAGT GCGTCT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1053:175166..177121-

>mRNA_H-akashiwo_Contig1053.4.1 ID=mRNA_H-akashiwo_Contig1053.4.1|Name=mRNA_H-akashiwo_Contig1053.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig1053:175166..177121- (Heterosigma akashiwo CCMP452)
ATGGCCTCGCTGGCGGGCGCCACGAGCGCGGTGAAGGCGGTCAGTTTCTC
GGGGCCGGGCCTTTACTGGAGCGTGGACCGCTTCGGGATCACCCAGGACG
CTTTGGAGGAGTACGTGACGATCGTGAAGCCCCAGTACGACCTGGTGCCC
AGGGTGGACGAGAACGACGGCACCGTGGCCGACATCAACTGCCCCTACGC
GTACAACTACCTTGCGTGCCACGGGATCTCCCTGACTGCTGTTACTCTGT
ACGAGAACTGTGGAGACCCCCGCGGCCGTGACTGGAGTGAGGCCATCCAG
TATGTCGTTGATGCCTATGGCGAATTTGACTCTTCTGAAGACACCACAGA
CTAA
back to top