mRNA_H-akashiwo_Contig1052.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1052.8.1
Unique NamemRNA_H-akashiwo_Contig1052.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Match: A0A6J1QJD7_9HYME (uncharacterized protein LOC112461499 n=1 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1QJD7_9HYME)

HSP 1 Score: 124 bits (311), Expect = 6.140e-32
Identity = 61/123 (49.59%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMAELTHLRKTFADNGY 369
            W R+ DDT++IW H ++   +FL  LN  HP I++    E+N Q+PFLDVLV RN+DG+ +  VYRKPTH+DRYLH TS+H    K S I +LVYRA     + SL   EL HL +    NGY
Sbjct:   32 WFRYVDDTFVIWSHGRDTLPQFLAFLNSQHPNIQFTMEVEQNSQIPFLDVLVRRNDDGTLSHQVYRKPTHTDRYLHATSHHHPSQKNSVISSLVYRALTISESTSLN-GELEHLNQALTKNGY 153          
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Match: UPI0010FBB0A7 (uncharacterized protein LOC114944459 n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FBB0A7)

HSP 1 Score: 119 bits (299), Expect = 7.220e-32
Identity = 61/123 (49.59%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMAELTHLRKTFADNGY 369
            W R+ DDT++IW H +E F +FL  LN  H  I++    E+N QLPFLDVLV +N+DG+    VYRKPTH+DRYLH TS+H    K S I +L+YRA       SL   EL HL +    NGY
Sbjct:   32 WFRYVDDTFVIWNHGKETFPQFLDFLNYQHRSIQFIMEIEQNNQLPFLDVLVKKNDDGTLGHRVYRKPTHTDRYLHSTSHHHPAQKNSVISSLIYRALTISEPTSLN-EELEHLNQVLTKNGY 153          
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Match: UPI0005F425C1 (uncharacterized protein LOC105566767 n=2 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F425C1)

HSP 1 Score: 122 bits (305), Expect = 2.500e-31
Identity = 60/123 (48.78%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMAELTHLRKTFADNGY 369
            W R+ DDT++IW H +E   +FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRYLH  S+H    K S I +LV+RA       +L   EL HL +T   NGY
Sbjct:   32 WFRYVDDTFVIWNHGRETLPQFLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSIISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 153          
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Match: UPI0005F52B34 (uncharacterized protein LOC105562568 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F52B34)

HSP 1 Score: 119 bits (298), Expect = 3.220e-31
Identity = 58/123 (47.15%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMAELTHLRKTFADNGY 369
            W R+ DDT++IW H +E   +FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+    VYRKPTH+DRYLH  S+H    K S I +LV+RA       +L   +L HL +    NGY
Sbjct:   32 WFRYVDDTFVIWNHGRETLPQFLTFINSQHPNIQFTIEIEQNSQIPFLDVLVCRNEDGTLGHNVYRKPTHTDRYLHANSHHHPAQKNSVINSLVHRALSISEPAALD-GKLNHLHRALTRNGY 153          
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Match: A0A401QI04_SCYTO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QI04_SCYTO)

HSP 1 Score: 124 bits (312), Expect = 5.860e-31
Identity = 60/123 (48.78%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMAELTHLRKTFADNGY 369
            W R+ DDT++IW H ++  +EFL  LN IHP IK+    E+NGQ+PFLDVLV RN +G+ + TVYRK TH+DRYLH  S+H  K K   + TL +R+        L+  EL HL++  A NGY
Sbjct:  308 WYRYIDDTFVIWPHGRQKLEEFLGHLNSIHPNIKFTMEIEENGQIPFLDVLVKRNAEGTLSHTVYRKTTHTDRYLHAESHHHPKQKRGILHTLAHRSKTISDKQHLR-EELQHLQQALASNGY 429          
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Match: UPI0005F3F8F4 (uncharacterized protein LOC105556235 n=3 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F3F8F4)

HSP 1 Score: 121 bits (304), Expect = 1.330e-30
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMAELTHLRKTFADNGY 369
            W R+ DDT++IW H +E   +FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRYLH  S+H    K S I +LV+RA    S  + +  EL HL +T   NGY
Sbjct:  108 WFRYVDDTFVIWNHGRETLPQFLTFINSQHPNIQFTMESEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAPKYSVISSLVHRALSI-SEPAAQNGELNHLHRTLTRNGY 229          
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Match: UPI0005F54FC3 (uncharacterized protein LOC105562922 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F54FC3)

HSP 1 Score: 119 bits (297), Expect = 2.880e-30
Identity = 58/123 (47.15%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMAELTHLRKTFADNGY 369
            W  + DDT++IW H +E   +FL  +N  HP I++    E+N Q+PFLDVL+ RNEDG+ +  VYRKPTH+DRYLH  S+H    K S I +LV+RA       +L   EL HL +T   NGY
Sbjct:   19 WFWYVDDTFVIWSHGRETLPQFLTFINSQHPNIQFTMETEQNSQIPFLDVLIRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSVISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 140          
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Match: UPI0005F50163 (uncharacterized protein LOC105570918 n=2 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F50163)

HSP 1 Score: 120 bits (300), Expect = 4.150e-30
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMAELTHLRKTFADNGY 369
            W R+ DDT++IW H +E    FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRY H  S+H    K S I +LV+RA       +L   EL HL +T   NGY
Sbjct:  218 WFRYVDDTFVIWNHGRETLPHFLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYFHANSHHHPAQKNSVISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 339          
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Match: UPI0005F52A44 (uncharacterized protein LOC105556506 n=3 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F52A44)

HSP 1 Score: 121 bits (304), Expect = 4.390e-30
Identity = 60/123 (48.78%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMAELTHLRKTFADNGY 369
            WLR+ DDT++IW H +E   +FL  +N  HP I++    E+N Q+PFLDVLV RNED + +  VYRKPTH+DRYLH  S+H    K S I +LV+RA       +L   EL HL +T   NGY
Sbjct:  295 WLRYVDDTFVIWNHGRETLPQFLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDSTLSHNVYRKPTHTDRYLHANSHHHPAQKNSVISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 416          
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Match: UPI0005F49CD5 (uncharacterized protein LOC105556100 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F49CD5)

HSP 1 Score: 121 bits (304), Expect = 1.130e-29
Identity = 60/123 (48.78%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMAELTHLRKTFADNGY 369
            W R+ DDT++IW H +E    FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRYLH  S+H    K S I +LV+RA       +L   EL HL +T   NGY
Sbjct:  333 WFRYVDDTFVIWNHGRETLPHFLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSVISSLVHRALSISEPAALN-GELNHLHRTLTRNGY 454          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1052.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J1QJD7_9HYME6.140e-3249.59uncharacterized protein LOC112461499 n=1 Tax=Temno... [more]
UPI0010FBB0A77.220e-3249.59uncharacterized protein LOC114944459 n=1 Tax=Nylan... [more]
UPI0005F425C12.500e-3148.78uncharacterized protein LOC105566767 n=2 Tax=Volle... [more]
UPI0005F52B343.220e-3147.15uncharacterized protein LOC105562568 n=1 Tax=Volle... [more]
A0A401QI04_SCYTO5.860e-3148.78Reverse transcriptase domain-containing protein (F... [more]
UPI0005F3F8F41.330e-3048.78uncharacterized protein LOC105556235 n=3 Tax=Volle... [more]
UPI0005F54FC32.880e-3047.15uncharacterized protein LOC105562922 n=1 Tax=Volle... [more]
UPI0005F501634.150e-3047.97uncharacterized protein LOC105570918 n=2 Tax=Volle... [more]
UPI0005F52A444.390e-3048.78uncharacterized protein LOC105556506 n=3 Tax=Volle... [more]
UPI0005F49CD51.130e-2948.78uncharacterized protein LOC105556100 n=1 Tax=Volle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1052contigH-akashiwo_Contig1052:367986..368354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog28377.ENSACAP00000021908
PFAMsRVT_1
Model size369
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.36e-26
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria,48H4M@7711|Chordata
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387063.567511-UTR-H-akashiwo_Contig1052:367985..3680121681387063.567511-UTR-H-akashiwo_Contig1052:367985..368012Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1052 367986..368012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387063.5788856-CDS-H-akashiwo_Contig1052:368012..3683541681387063.5788856-CDS-H-akashiwo_Contig1052:368012..368354Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1052 368013..368354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1052.8.1prot_H-akashiwo_Contig1052.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1052 368013..368354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1052.8.1

>prot_H-akashiwo_Contig1052.8.1 ID=prot_H-akashiwo_Contig1052.8.1|Name=mRNA_H-akashiwo_Contig1052.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
MIWEHSQEFFDEFLKKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGS
FTTTVYRKPTHSDRYLHWTSNHPVKDKLSGIRTLVYRANHYCSTVSLKMA
ELTHLRKTFADNGY
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mRNA from alignment at H-akashiwo_Contig1052:367986..368354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1052.8.1 ID=mRNA_H-akashiwo_Contig1052.8.1|Name=mRNA_H-akashiwo_Contig1052.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=369bp|location=Sequence derived from alignment at H-akashiwo_Contig1052:367986..368354+ (Heterosigma akashiwo CCMP452)
TGGCTCAGGTTCCGTGATGACACCTGGATGATCTGGGAGCACTCTCAGGA GTTTTTTGATGAGTTCTTGAAGAAGCTCAATGGCATACACCCGAAGATTA AGTGGGAGGCAGTGTTTGAGAAGAATGGGCAGTTGCCTTTTCTGGACGTG TTGGTGGTGAGAAATGAGGATGGCTCTTTTACTACCACGGTCTACCGGAA ACCCACGCACTCTGACAGGTACCTCCATTGGACTTCCAACCATCCTGTGA AGGACAAGCTTTCTGGTATTAGAACTTTGGTCTATCGTGCTAACCACTAC TGCTCTACGGTTAGCCTGAAGATGGCGGAGTTGACCCATTTGAGGAAGAC TTTTGCTGACAATGGTTAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1052:367986..368354+

>mRNA_H-akashiwo_Contig1052.8.1 ID=mRNA_H-akashiwo_Contig1052.8.1|Name=mRNA_H-akashiwo_Contig1052.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig1052:367986..368354+ (Heterosigma akashiwo CCMP452)
ATGATCTGGGAGCACTCTCAGGAGTTTTTTGATGAGTTCTTGAAGAAGCT
CAATGGCATACACCCGAAGATTAAGTGGGAGGCAGTGTTTGAGAAGAATG
GGCAGTTGCCTTTTCTGGACGTGTTGGTGGTGAGAAATGAGGATGGCTCT
TTTACTACCACGGTCTACCGGAAACCCACGCACTCTGACAGGTACCTCCA
TTGGACTTCCAACCATCCTGTGAAGGACAAGCTTTCTGGTATTAGAACTT
TGGTCTATCGTGCTAACCACTACTGCTCTACGGTTAGCCTGAAGATGGCG
GAGTTGACCCATTTGAGGAAGACTTTTGCTGACAATGGTTAT
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