mRNA_H-akashiwo_Contig1052.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1052.6.1
Unique NamemRNA_H-akashiwo_Contig1052.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1052.6.1 vs. uniprot
Match: A0A6A3EG31_9STRA (SET domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3EG31_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.290e-5
Identity = 17/25 (68.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:   73 NLACERFIQWLQDNGASFPKIQWPS 147
            + A +RF+QWLQDNGA+FPK+QWP+
Sbjct:    3 SAAEQRFLQWLQDNGATFPKLQWPT 27
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1052.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A3EG31_9STRA7.290e-568.00SET domain-containing protein n=2 Tax=Phytophthora... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1052contigH-akashiwo_Contig1052:147816..148118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo134448
PFAMsSET
Model size158
Max annot lvl4776|Peronosporales
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue7.86e-05
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota,3QAYT@4776|Peronosporales
EC2.1.1.43
Descriptionpeptidyl-lysine monomethylation
Cds size156
COG categoryS
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387063.1065507-CDS-H-akashiwo_Contig1052:147815..1479141681387063.1065507-CDS-H-akashiwo_Contig1052:147815..147914Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1052 147816..147914 +
1681387063.117573-CDS-H-akashiwo_Contig1052:148061..1481181681387063.117573-CDS-H-akashiwo_Contig1052:148061..148118Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1052 148062..148118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1052.6.1prot_H-akashiwo_Contig1052.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1052 147816..148118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1052.6.1

>prot_H-akashiwo_Contig1052.6.1 ID=prot_H-akashiwo_Contig1052.6.1|Name=mRNA_H-akashiwo_Contig1052.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
MSESAEGLGGKISSPQKIDEETSYNLACERFIQWLQDNGASFPKIQWPSK
NT
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mRNA from alignment at H-akashiwo_Contig1052:147816..148118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1052.6.1 ID=mRNA_H-akashiwo_Contig1052.6.1|Name=mRNA_H-akashiwo_Contig1052.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig1052:147816..148118+ (Heterosigma akashiwo CCMP452)
ATGTCAGAGAGTGCAGAAGGGCTGGGAGGCAAAATTTCATCACCACAAAA
AATAGACGAGGAGACTTCGTACAACTTAGCGTGCGAGCGCTTCATTCAGG
TGTGGACGACTATTTAGATACATATCCCTCCTGTAACCCTTCCTCTGTCG
TTCCCGAAATCAAATCGGTAGCAAAAAGTTAGGGTGTTGTGTGTCAGAAC
ATCAGAACTATAGCATGCAACTGGTCAAAATTGTGTCATAAAACAGTGGC
TGCAGGATAATGGAGCATCCTTCCCCAAAATTCAATGGCCATCCAAGAAC
ACG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1052:147816..148118+

>mRNA_H-akashiwo_Contig1052.6.1 ID=mRNA_H-akashiwo_Contig1052.6.1|Name=mRNA_H-akashiwo_Contig1052.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1052:147816..148118+ (Heterosigma akashiwo CCMP452)
ATGTCAGAGAGTGCAGAAGGGCTGGGAGGCAAAATTTCATCACCACAAAA
AATAGACGAGGAGACTTCGTACAACTTAGCGTGCGAGCGCTTCATTCAGT
GGCTGCAGGATAATGGAGCATCCTTCCCCAAAATTCAATGGCCATCCAAG
AACACG
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