mRNA_H-akashiwo_Contig1052.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1052.10.1
Unique NamemRNA_H-akashiwo_Contig1052.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1052.10.1 vs. uniprot
Match: A0A7S3YF19_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF19_HETAK)

HSP 1 Score: 103 bits (257), Expect = 2.440e-26
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 FLVFRNEGETDETTGATKPEEEIPILDKDLERLLTPKLVYVTASLLDGLILQA 159
            FLVFRNEGETDETTGATKPEEEIPILDKDLERLLTPKLVYVTASLLDGLILQA
Sbjct:   46 FLVFRNEGETDETTGATKPEEEIPILDKDLERLLTPKLVYVTASLLDGLILQA 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1052.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YF19_HETAK2.440e-26100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1052contigH-akashiwo_Contig1052:399261..399668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size161
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387063.142941-CDS-H-akashiwo_Contig1052:399260..3993081681387063.142941-CDS-H-akashiwo_Contig1052:399260..399308Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1052 399261..399308 -
1681387063.152951-CDS-H-akashiwo_Contig1052:399452..3995031681387063.152951-CDS-H-akashiwo_Contig1052:399452..399503Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1052 399453..399503 -
1681387063.163462-CDS-H-akashiwo_Contig1052:399608..3996681681387063.163462-CDS-H-akashiwo_Contig1052:399608..399668Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1052 399609..399668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1052.10.1prot_H-akashiwo_Contig1052.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1052 399261..399668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1052.10.1

>prot_H-akashiwo_Contig1052.10.1 ID=prot_H-akashiwo_Contig1052.10.1|Name=mRNA_H-akashiwo_Contig1052.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=53bp
FLVFRNEGETDETTGATKPEEEIPILDKDLERLLTPKLVYVTASLLDGLI
LQA
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mRNA from alignment at H-akashiwo_Contig1052:399261..399668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1052.10.1 ID=mRNA_H-akashiwo_Contig1052.10.1|Name=mRNA_H-akashiwo_Contig1052.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=408bp|location=Sequence derived from alignment at H-akashiwo_Contig1052:399261..399668- (Heterosigma akashiwo CCMP452)
TTCCTTGTATTTAGAAACGAGGGGGAAACGGATGAAACTACTGGAGCCAC
TAAACCAGAGGTATTGCCAATAATCTGTCCATTGTGCGTATTGAGTCCGT
TTTTTTTCTGGATGATACTTTGTTATATATGTATATATATGTTCGTGGCA
ACGCAAATATACCAGGAGGAGATACCGATCCTTGATAAAGATCTTGAGAG
GCTTCTCACTCCAAAGGTAAGGAATTCTCAGCAAATGAAGAAGTTATACA
CAGCCACAGCAACGTACTGATAAAACTAATGCACAATCATGATATATTTT
TAATCATAATGCATCGTGAGTGACACTTTCAAAAAATGCTCCAAATGTTT
TGTTGCCCAGTTGGTCTATGTGACGGCCTCTTTACTCGACGGGCTCATTC
TTCAAGCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1052:399261..399668-

>mRNA_H-akashiwo_Contig1052.10.1 ID=mRNA_H-akashiwo_Contig1052.10.1|Name=mRNA_H-akashiwo_Contig1052.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=159bp|location=Sequence derived from alignment at H-akashiwo_Contig1052:399261..399668- (Heterosigma akashiwo CCMP452)
TTCCTTGTATTTAGAAACGAGGGGGAAACGGATGAAACTACTGGAGCCAC
TAAACCAGAGGAGGAGATACCGATCCTTGATAAAGATCTTGAGAGGCTTC
TCACTCCAAAGTTGGTCTATGTGACGGCCTCTTTACTCGACGGGCTCATT
CTTCAAGCA
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