mRNA_H-akashiwo_Contig105.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig105.7.1
Unique NamemRNA_H-akashiwo_Contig105.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Match: A0A6V1PDI6_HETAK (Histidine kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PDI6_HETAK)

HSP 1 Score: 235 bits (599), Expect = 8.520e-71
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query:    1 PNDHKLLLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLKMDLEAAKKGPGSAREGGPGSGRAPAAGTAATAEWAARRDAV 366
            PNDHKLLLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLKMDLEAAKKGPGSAREGGPGSGRAPAAGTAATAEWAARRDAV
Sbjct:  556 PNDHKLLLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLKMDLEAAKKGPGSAREGGPGSGRAPAAGTAATAEWAARRDAV 677          
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Match: A0A2H6AE74_9BACT (Histidine kinase n=1 Tax=bacterium HR36 TaxID=2035431 RepID=A0A2H6AE74_9BACT)

HSP 1 Score: 115 bits (289), Expect = 1.390e-27
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    4 NDHKLLLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLKM 246
            NDH LLLFSVRDTGIGI +     +F+AFEQ D+ TTR+YGG+GLGLAI   LV LMGGRIWVESE GQGSTF+FTA L++
Sbjct:  797 NDHALLLFSVRDTGIGIPRDKQERIFQAFEQVDTSTTRRYGGTGLGLAIASKLVGLMGGRIWVESEPGQGSTFYFTARLEV 877          
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Match: A0A2N2VUA7_9BACT (Hybrid sensor histidine kinase/response regulator (Fragment) n=2 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A2N2VUA7_9BACT)

HSP 1 Score: 110 bits (274), Expect = 6.600e-26
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   10 HKLLLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLK 243
            H+ L FSVRD+GIGIAK  +  +F+AF Q DS TTR+YGG+GLGLAI K L+ELMGGR+WVES VG+GSTFFFT  L+
Sbjct:  204 HQELQFSVRDSGIGIAKDKIDIMFEAFTQADSSTTRRYGGTGLGLAIAKHLIELMGGRVWVESTVGKGSTFFFTIKLR 281          
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Match: A0A3M1RNE5_9BACT (Histidine kinase n=1 Tax=Nitrospinae bacterium TaxID=2026769 RepID=A0A3M1RNE5_9BACT)

HSP 1 Score: 109 bits (273), Expect = 1.940e-25
Identity = 55/88 (62.50%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 PNDHKLLLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLKMDLEAAK 264
            P+D  LL F+VRDTGIGI       +F  F Q D  TTR+YGG+GLGLAITK LVE+MGGRIWVES VGQGSTF FTAL +   +  K
Sbjct:  452 PSDQVLLHFAVRDTGIGIPPEKQQIIFNPFTQADGSTTRRYGGTGLGLAITKQLVEMMGGRIWVESRVGQGSTFHFTALFRRQQQVEK 539          
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Match: A0A644TS00_9ZZZZ (Signal transduction histidine-protein kinase BarA n=6 Tax=root TaxID=1 RepID=A0A644TS00_9ZZZZ)

HSP 1 Score: 108 bits (271), Expect = 2.900e-25
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   10 HKLLLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLK 243
            ++ L FSVRD+GIGI K  +G LF AF Q DS TTR+YGG+GLGLAI K LVELM GRIWVESEVG+GSTFFFT  L+
Sbjct:  204 YQELQFSVRDSGIGIPKEKIGILFDAFTQADSTTTRRYGGTGLGLAIAKHLVELMDGRIWVESEVGKGSTFFFTIRLR 281          
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Match: A0A0F3GZN9_9BACT (Membrane protein containing ATP-binding region, ATPase-like protein n=1 Tax=Candidatus Magnetobacterium bavaricum TaxID=29290 RepID=A0A0F3GZN9_9BACT)

HSP 1 Score: 108 bits (271), Expect = 3.490e-25
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   19 LLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLK 243
            ++FSVRDTGIGIA   LG++F++F+Q DS TTRKYGG+GLGL+I+K LVELM G IWVES +GQGSTFFFTA L+
Sbjct:  552 IMFSVRDTGIGIATDKLGTVFESFKQADSSTTRKYGGTGLGLSISKRLVELMDGTIWVESVLGQGSTFFFTARLE 626          
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Match: A0A6M0S8A2_9CYAN (Response regulator n=3 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A6M0S8A2_9CYAN)

HSP 1 Score: 108 bits (270), Expect = 5.000e-25
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1
Query:   10 HKLLLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLKMDLE 255
            H+ L F+V+DTGIGI    +  LFKAF Q DS TTRKYGG+GLGLAI K L E+MGG+IWVES+  QGSTFFFT  L+  +E
Sbjct:  524 HQSLCFAVKDTGIGIPTQRIARLFKAFSQVDSSTTRKYGGTGLGLAICKQLTEMMGGKIWVESQADQGSTFFFTITLQTTVE 605          
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Match: U9W3Z8_9CYAN (Multi-sensor hybrid histidine kinase n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9W3Z8_9CYAN)

HSP 1 Score: 108 bits (270), Expect = 5.000e-25
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1
Query:   10 HKLLLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLKMDLE 255
            H+ L F+V+DTGIGI    +  LFKAF Q DS TTRKYGG+GLGLAI K LVE+MGG IWV+S+V QGSTFFFT  ++  LE
Sbjct:  524 HQSLCFAVKDTGIGIPAQRIERLFKAFSQVDSSTTRKYGGTGLGLAICKQLVEMMGGNIWVDSQVDQGSTFFFTVTVQTVLE 605          
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Match: A0A4Q0T684_9BACT (Multi-sensor hybrid histidine kinase n=1 Tax=Granulicella sibirica TaxID=2479048 RepID=A0A4Q0T684_9BACT)

HSP 1 Score: 107 bits (268), Expect = 8.560e-25
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   19 LLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALL 240
            LLF VRDTGIGI    LGS+F+ F Q DS TTRKYGG+GLGLAI++ LVE+MGGRIWVES VGQGSTF FT  L
Sbjct:  309 LLFRVRDTGIGIPPEKLGSIFENFSQADSSTTRKYGGTGLGLAISRRLVEMMGGRIWVESIVGQGSTFLFTVKL 382          
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Match: A0A3A5AT11_9DELT (Histidine kinase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A5AT11_9DELT)

HSP 1 Score: 107 bits (268), Expect = 9.590e-25
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 1
Query:   19 LLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAITKSLVELMGGRIWVESEVGQGSTFFFTALLKMDLEAA 261
            LLFSVRDTGIGI+      +F++F Q DS TTR+YGG+GLGL I+K LVE MGGRIWVESE+G+GSTFFFT  L +D + A
Sbjct: 1795 LLFSVRDTGIGISSEKQQEIFRSFTQADSSTTRQYGGTGLGLTISKHLVEKMGGRIWVESELGKGSTFFFTTQLPIDNDGA 1875          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig105.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1PDI6_HETAK8.520e-71100.00Histidine kinase n=1 Tax=Heterosigma akashiwo TaxI... [more]
A0A2H6AE74_9BACT1.390e-2770.37Histidine kinase n=1 Tax=bacterium HR36 TaxID=2035... [more]
A0A2N2VUA7_9BACT6.600e-2667.95Hybrid sensor histidine kinase/response regulator ... [more]
A0A3M1RNE5_9BACT1.940e-2562.50Histidine kinase n=1 Tax=Nitrospinae bacterium Tax... [more]
A0A644TS00_9ZZZZ2.900e-2570.51Signal transduction histidine-protein kinase BarA ... [more]
A0A0F3GZN9_9BACT3.490e-2570.67Membrane protein containing ATP-binding region, AT... [more]
A0A6M0S8A2_9CYAN5.000e-2563.41Response regulator n=3 Tax=Leptolyngbyaceae TaxID=... [more]
U9W3Z8_9CYAN5.000e-2564.63Multi-sensor hybrid histidine kinase n=1 Tax=Lepto... [more]
A0A4Q0T684_9BACT8.560e-2572.97Multi-sensor hybrid histidine kinase n=1 Tax=Granu... [more]
A0A3A5AT11_9DELT9.590e-2565.43Histidine kinase n=1 Tax=Desulfobacteraceae bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig105contigH-akashiwo_Contig105:673519..674465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog102129.Lepto7375DRAFT_7128
PFAMsCHASE4,GAF,GAF_3,HAMP,HATPase_c,HisKA,Hpt,PAS,PAS_3,PAS_4,PAS_9,Response_reg
Model size368
Max annot lvl1117|Cyanobacteria
KEGG koko:K11527
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.37e-26
EggNOG OGsCOG0642@1|root,COG0642@2|Bacteria,COG2205@2|Bacteria,1G09B@1117|Cyanobacteria,1H82F@1150|Oscillatoriales
EC2.7.13.3
DescriptionHistidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Cds size366
COG categoryT
BRITEko00000,ko01000,ko01001,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.566374-CDS-H-akashiwo_Contig105:673518..6735911681387062.566374-CDS-H-akashiwo_Contig105:673518..673591Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 673519..673591 +
1681387062.5780535-CDS-H-akashiwo_Contig105:673818..6739961681387062.5780535-CDS-H-akashiwo_Contig105:673818..673996Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 673819..673996 +
1681387062.5876834-CDS-H-akashiwo_Contig105:674348..6744631681387062.5876834-CDS-H-akashiwo_Contig105:674348..674463Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 674349..674463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig105.7.1prot_H-akashiwo_Contig105.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig105 673519..674463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig105.7.1

>prot_H-akashiwo_Contig105.7.1 ID=prot_H-akashiwo_Contig105.7.1|Name=mRNA_H-akashiwo_Contig105.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=122bp
PNDHKLLLFSVRDTGIGIAKAFLGSLFKAFEQQDSKTTRKYGGSGLGLAI
TKSLVELMGGRIWVESEVGQGSTFFFTALLKMDLEAAKKGPGSAREGGPG
SGRAPAAGTAATAEWAARRDAV
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mRNA from alignment at H-akashiwo_Contig105:673519..674465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig105.7.1 ID=mRNA_H-akashiwo_Contig105.7.1|Name=mRNA_H-akashiwo_Contig105.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=947bp|location=Sequence derived from alignment at H-akashiwo_Contig105:673519..674465+ (Heterosigma akashiwo CCMP452)
CCCAACGACCACAAGCTGCTGCTCTTCTCGGTGCGGGACACAGGCATCGG CATCGCCAAGGCCTTCCTGGGCTGTGAGTGCCGGGGGGCGGGGCCCCTCC CCTCCTCTCCTGTTGTTGGTGAGAGATCAGAGTTGGTGAGAGGGTAAGCT ATGGCGCCTGTTTACTCCCTGACCTTCCTTGAGCCATGGGCTTCACTTTT CTCCCTCCAACCCCAATGGCAGTCACATACATGGATGATTGTTTGGCATC TCTGAGACAACTTCCGGATGTACATGCACAAACAACAACAAAAACTGCAG CACTGTTCAAGGCGTTTGAGCAGCAGGACTCCAAGACAACGCGCAAGTAC GGCGGCTCGGGCCTGGGCCTGGCCATCACCAAGAGCCTGGTGGAGCTGAT GGGCGGCCGCATCTGGGTGGAGAGCGAGGTCGGCCAGGGGTCCACCTTCT TCTTCACGGCGCTGCTCAAGATGGACCTGTGAGTGGGGCCGCAGCCCACC CCCCTGCTGCGAGGCTTTGGCGCGCGCGTGTTGCGGCGGGGTGGTTGGCC CTACCCAGGCTTGGATTTTTTTTCGATCTTTTGAGTTCCAACGTAAATGC CCAGGGTCAGGGTTCAACAGTGGAAGATGGAGAAGAGTACAAAAAACAGC AGCACCATTTAAAAAAGTAACACAACGCTAAAGTCGTACCTTCACTGATG TTTTGGCCTGCTGCACTTTCGGAGTAGTAGTTGCCCCTCCACCGTAAGAA CCCTTGCAGTGAAGACAGAGGTCTGCCCGGTTCGGCACCGCCCGCCCTGC CCCCCCATCCGTCGCCCAACGGCGTGCCAGGGAGGCGGCAAAGAAGGGCC CCGGCTCGGCGAGGGAGGGCGGCCCGGGCAGTGGCCGGGCGCCGGCCGCG GGCACTGCGGCGACGGCGGAGTGGGCCGCCCGGCGCGACGCTGTGCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig105:673519..674465+

>mRNA_H-akashiwo_Contig105.7.1 ID=mRNA_H-akashiwo_Contig105.7.1|Name=mRNA_H-akashiwo_Contig105.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=366bp|location=Sequence derived from alignment at H-akashiwo_Contig105:673519..674465+ (Heterosigma akashiwo CCMP452)
CCCAACGACCACAAGCTGCTGCTCTTCTCGGTGCGGGACACAGGCATCGG
CATCGCCAAGGCCTTCCTGGGCTCACTGTTCAAGGCGTTTGAGCAGCAGG
ACTCCAAGACAACGCGCAAGTACGGCGGCTCGGGCCTGGGCCTGGCCATC
ACCAAGAGCCTGGTGGAGCTGATGGGCGGCCGCATCTGGGTGGAGAGCGA
GGTCGGCCAGGGGTCCACCTTCTTCTTCACGGCGCTGCTCAAGATGGACC
TGGAGGCGGCAAAGAAGGGCCCCGGCTCGGCGAGGGAGGGCGGCCCGGGC
AGTGGCCGGGCGCCGGCCGCGGGCACTGCGGCGACGGCGGAGTGGGCCGC
CCGGCGCGACGCTGTG
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