mRNA_H-akashiwo_Contig105.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig105.6.1
Unique NamemRNA_H-akashiwo_Contig105.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig105.6.1 vs. uniprot
Match: A0A6V1PDI6_HETAK (Histidine kinase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PDI6_HETAK)

HSP 1 Score: 103 bits (258), Expect = 1.080e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 2 
Query:    2 TMGEEPTQEEMLAQDFKFSYTEIIPFADREFLVRIASQGPEDMYANTWSV 151
            TMGEEPTQEEMLAQDFKFSYTEIIPFADREFLVRIASQGPEDMYANTWSV
Sbjct:  303 TMGEEPTQEEMLAQDFKFSYTEIIPFADREFLVRIASQGPEDMYANTWSV 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig105.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1PDI6_HETAK1.080e-24100.00Histidine kinase n=1 Tax=Heterosigma akashiwo TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig105contigH-akashiwo_Contig105:668614..670246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size151
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.4574072-UTR-H-akashiwo_Contig105:668613..6686171681387062.4574072-UTR-H-akashiwo_Contig105:668613..668617Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig105 668614..668617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.4659023-CDS-H-akashiwo_Contig105:668617..6687281681387062.4659023-CDS-H-akashiwo_Contig105:668617..668728Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 668618..668728 +
1681387062.475875-CDS-H-akashiwo_Contig105:670210..6702461681387062.475875-CDS-H-akashiwo_Contig105:670210..670246Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 670211..670246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig105.6.1prot_H-akashiwo_Contig105.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig105 668618..670246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig105.6.1

>prot_H-akashiwo_Contig105.6.1 ID=prot_H-akashiwo_Contig105.6.1|Name=mRNA_H-akashiwo_Contig105.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
MGEEPTQEEMLAQDFKFSYTEIIPFADREFLVRIASQGPEDMYANTWSV
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mRNA from alignment at H-akashiwo_Contig105:668614..670246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig105.6.1 ID=mRNA_H-akashiwo_Contig105.6.1|Name=mRNA_H-akashiwo_Contig105.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1633bp|location=Sequence derived from alignment at H-akashiwo_Contig105:668614..670246+ (Heterosigma akashiwo CCMP452)
CACAATGGGAGAGGAGCCCACCCAGGAGGAAATGCTTGCGCAAGACTTCA
AGTTTTCCTACACTGAAATCATTCCTTTCGCTGATCGTGAATTCCTCGTT
CGAATTGCAAGCCAGGTACAGAAGTACACATCAACTCCATATAATATATA
ACTTGTGTTTGTACGTACATCTTGCGAGATGCTTGATAAGAACAACAGGA
GAGCAGCTATTTTGCAGTTTTCTTTTTTCTTTTTCTGGCCGTGGTATTTT
TGCGGGAACCTATTGAACTACTTGTTTTCTACATGTTTAAATGGAATCCT
GGTCTCGTTTTCTACTATGCGTTTTGACACAAAGTGAAAATGATAAGCCA
GGACCTATCCACTGCTTCTACCACCCATGTTTATCTGATTTTGAAACTGC
GTCCCCCCAATTGGCATAAAATCTTCTCTATGCATGTGTTGTTGTTGTTA
TAGTACGTTACGATTGGGAGTGTTCCATACTCCTGGTAGCCTGACCCTGA
GTGACCTCTTGTATGTTTCAAGTGAGCAAAGTTCAGCTTTGTGGCATATT
GAAGCATGCTGCAGCCGGTGCAGGTGTTGCGGTACCCCCTCCTATCTGGA
CAGAGACTCTTTTAGGAGGAGGTGGCTGTGTGGTGTCTACAAAAACAGGT
TTAACCTCATTTTTAGTAACCCGCGCTCCTTACCATCAGCAGCCTGGGAC
TGGGCTATCCCAGAGATCAGGCGCTGGATCGAATGGGCGCAGAGAAAGAA
GAGCCCCAGACCAAGTGATCATTCATGAGCAACCAGCTTCTTCCTCGTTA
TCGTTGTTGTATAGTCGTCGCTGACAAAATAGACCTACTGTCGTTAGCTA
TTATATCTGTTTTTTCTTCTTCTCGTTGTGAATTGATAATTACTTCTTCT
CCATCTGTCTTCTTCTTGATGCTATTGTTGACATTACTTCCCTCCTTGGC
GTTGTTGTTGTCATCCTACCATTTTGGTGGGTTTTTGTCAATTTTTCTTT
CTTTCTTTTTATCTTAGCGAGGAGGCATCCTCCTACATACTCTTGTCAAT
GTTGTGAGCACGAGCGAACAGCGGGGTGTGTGGTAATGATGCTGCAAGAA
GAGTTTGATTGATATACTTTCCAGCTGAACTATCCAAAGCGGCTGGGAAC
GTATTAAAAAAAAAAAAAAAAAAAAAACTACTGGAGAAGAAGATCAGACT
CTCAATCGAATTTTAGTTCTAATGAAGTTCTGTTGGATTATAAAAAGTGT
CCTTATCAATCTGTCATTGCAGTACTCGTAATAATTATATATATAGAGAG
AGAGTTAAATTTAACCAGAACAACCTACGCCTTGCATCTATGCAGATGTC
CCTGTGGTAATATACTAATAAAACCTAAACATCTTTATATTAAATATAGA
TAACCTAATAATCGGTGATGACCTCTTAGAGTGTGTACTTGCTTCAAAGT
CGCAGCAATCCCGCTTCAAATGTTCTATGAAGTCTTCCTTCAAACAACTG
AGCAGCAGGAAGGTCACCCTTGCCTTCTTGCTGTAGTTTCCCCGCCTCAC
CCCCGCACGCGCCCCGCCCTCCCTCGTACCTCCTACACCCCGGCCAGGGC
CCGGAGGACATGTACGCAAACACCTGGTCCGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig105:668614..670246+

>mRNA_H-akashiwo_Contig105.6.1 ID=mRNA_H-akashiwo_Contig105.6.1|Name=mRNA_H-akashiwo_Contig105.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig105:668614..670246+ (Heterosigma akashiwo CCMP452)
ATGGGAGAGGAGCCCACCCAGGAGGAAATGCTTGCGCAAGACTTCAAGTT
TTCCTACACTGAAATCATTCCTTTCGCTGATCGTGAATTCCTCGTTCGAA
TTGCAAGCCAGGGCCCGGAGGACATGTACGCAAACACCTGGTCCGTG
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