mRNA_H-akashiwo_Contig105.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig105.3.1
Unique NamemRNA_H-akashiwo_Contig105.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig105.3.1 vs. uniprot
Match: A0A7S3UX63_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX63_HETAK)

HSP 1 Score: 98.6 bits (244), Expect = 1.030e-25
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 MRAADGLKIQDYTLARSFLLRKRRQEIASRRVSRRPSLSQSDGQPNEEMLLQ 156
            MRAADGLKIQDYTLARSFLLRKRRQEIASRRVSRRPSLSQSDGQPNEEMLLQ
Sbjct:    1 MRAADGLKIQDYTLARSFLLRKRRQEIASRRVSRRPSLSQSDGQPNEEMLLQ 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig105.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UX63_HETAK1.030e-25100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig105contigH-akashiwo_Contig105:209291..209616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.2226498-CDS-H-akashiwo_Contig105:209290..2093991681387062.2226498-CDS-H-akashiwo_Contig105:209290..209399Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 209291..209399 -
1681387062.2340589-CDS-H-akashiwo_Contig105:209569..2096161681387062.2340589-CDS-H-akashiwo_Contig105:209569..209616Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 209570..209616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig105.3.1prot_H-akashiwo_Contig105.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig105 209291..209616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig105.3.1

>prot_H-akashiwo_Contig105.3.1 ID=prot_H-akashiwo_Contig105.3.1|Name=mRNA_H-akashiwo_Contig105.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
MRAADGLKIQDYTLARSFLLRKRRQEIASRRVSRRPSLSQSDGQPNEEML
LQ
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mRNA from alignment at H-akashiwo_Contig105:209291..209616-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig105.3.1 ID=mRNA_H-akashiwo_Contig105.3.1|Name=mRNA_H-akashiwo_Contig105.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=326bp|location=Sequence derived from alignment at H-akashiwo_Contig105:209291..209616- (Heterosigma akashiwo CCMP452)
ATGAGAGCAGCAGATGGACTGAAGATCCAAGACTACACCCTTGCGAGGTG
GCCTTTTTAAGCGATGACTGGATGACTTGCTGTGCCTTCGTATCTTTCGT
TTGCATCATGGAGGGAAAATATCAATAATGCAACATAGGCGTGTTAAACT
TCATTTTCCAGCAAGATCCCGTGTGCGAGCGCTTCTTTCATCATGTTGAA
TTCATATGCTTGGACAGGAGTTTTCTGTTGAGAAAACGGAGGCAAGAAAT
TGCCTCAAGACGGGTCTCAAGAAGGCCCTCGCTTTCGCAAAGTGATGGCC
AACCGAATGAGGAGATGTTGTTGCAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig105:209291..209616-

>mRNA_H-akashiwo_Contig105.3.1 ID=mRNA_H-akashiwo_Contig105.3.1|Name=mRNA_H-akashiwo_Contig105.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig105:209291..209616- (Heterosigma akashiwo CCMP452)
ATGAGAGCAGCAGATGGACTGAAGATCCAAGACTACACCCTTGCGAGGAG
TTTTCTGTTGAGAAAACGGAGGCAAGAAATTGCCTCAAGACGGGTCTCAA
GAAGGCCCTCGCTTTCGCAAAGTGATGGCCAACCGAATGAGGAGATGTTG
TTGCAA
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