mRNA_H-akashiwo_Contig105.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig105.13.1
Unique NamemRNA_H-akashiwo_Contig105.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Match: A0A7S2SIA7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SIA7_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.700e-46
Identity = 77/132 (58.33%), Postives = 98/132 (74.24%), Query Frame = 1
Query:    1 FDENVPRLNSVTLIGRTGSDPMARFFDSGKVVCTVSLAVKREYHPIERQALQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKATGEPRQKAKIRCDTFELLESKVEREARRANKS 396
            F+E++PR+NSVTL+GR G DP  ++ D GKVV  +SLAVKR+YHP+ER    I  GEEETDWF LE W R AEY  K V+KG+R+ V+G+L ID WTD+ TGEPR+KAKI     ++LE+K E E RR +KS
Sbjct:  103 FEEHIPRVNSVTLVGRVGQDPDPKYLDDGKVVLNLSLAVKRKYHPLERNVRNIKSGEEETDWFPLEIWGRDAEYASKYVDKGSRMMVTGTLQIDTWTDRNTGEPRKKAKIIVRHLDILETKAEAELRRGSKS 234          
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Match: A0A7R9W4H7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4H7_9STRA)

HSP 1 Score: 160 bits (404), Expect = 5.970e-46
Identity = 74/133 (55.64%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 FDENVPRLNSVTLIGRTGSDPMARFFDSGKVVCTVSLAVKREYHPIERQALQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKATGEPRQKAKIRCDTFELLESKVEREARRANKSG 399
            F++++PRLN VTL GR G+DP  R+FD GKVV  +SLAV+R+YHP+ER+   I YGEEETDWF LE W R AE+    V+KG RIG++GSL++D W D+ TGEPR K KI     ++LE++ E EARR+   G
Sbjct:  100 FEDHIPRLNIVTLSGRVGNDPEPRYFDDGKVVLNLSLAVQRKYHPLERKVRNIKYGEEETDWFPLELWGRDAEFASNFVDKGARIGITGSLMMDSWEDRNTGEPRTKHKILVKHLDILETRAEAEARRSRNRG 232          
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Match: A0A7S1YYF7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YYF7_TRICV)

HSP 1 Score: 158 bits (400), Expect = 1.760e-45
Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 FDENVPRLNSVTLIGRTGSDPMARFFDSGKVVCTVSLAVKREYHPIERQALQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKATGEPRQKAKIRCDTFELLESKVEREARR 384
            F++++PRLN VTL GR G+DP  R+FD GKVV  +SLA KR+YHP+ER+   I YGEEETDW+ LE W R AE+V K V KG RIG++GSL +D W DK TGEPR K KI+    +LLE+K E + R+
Sbjct:  103 FEDHIPRLNIVTLSGRVGNDPEPRYFDDGKVVLNLSLACKRKYHPLERKVRNIKYGEEETDWWPLEMWGRDAEFVSKYVNKGARIGITGSLTMDSWVDKNTGEPRSKYKIQVKHLDLLETKAEADLRK 230          
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Match: B8C9K7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9K7_THAPS)

HSP 1 Score: 154 bits (390), Expect = 1.780e-45
Identity = 73/125 (58.40%), Postives = 92/125 (73.60%), Query Frame = 1
Query:    1 FDENVPRLNSVTLIGRTGSDPMARFFDSGKVVCTVSLAVKREYHPIERQALQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKATGEPRQKAKIRCDTFELLESKVERE 375
            FDE++P+LN VTL+GR G  P  ++FD GKVV  +S+AVKR+YHP+ER+   I  GEEETDWF LEFW R AEYV   VEKG RIG++GSLV+D W DK TGE R++ KI     ++LES+ E E
Sbjct:    6 FDEHLPKLNVVTLVGRVGGTPDPKYFDDGKVVLNLSVAVKRKYHPLERKVRNIRSGEEETDWFPLEFWGRDAEYVTNYVEKGARIGITGSLVMDGWVDKMTGEQRRRPKIVVRHIDILESRAEAE 130          
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Match: K0SQT6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQT6_THAOC)

HSP 1 Score: 156 bits (394), Expect = 8.490e-45
Identity = 72/131 (54.96%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    1 FDENVPRLNSVTLIGRTGSDPMARFFDSGKVVCTVSLAVKREYHPIERQALQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKATGEPRQKAKIRCDTFELLESKVEREARRANK 393
            FDE++P+LNSVTL+GR G++P  ++FD GKVV  +SLA KR+YHP+ER+  +I  GEEETDWF LE W R AEYV   V+KG R+G++GSLV D W DK +G  R+K KI     ++LES+ E E R++N+
Sbjct:   73 FDEHLPKLNSVTLVGRVGNEPEPKYFDDGKVVLNLSLACKRKYHPLERKVREIKSGEEETDWFALEIWGRDAEYVANYVDKGARMGITGSLVQDSWIDKVSGMKRRKPKIAVRQVDVLESRAEAELRKSNR 203          
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Match: A0A7S2USN2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2USN2_9STRA)

HSP 1 Score: 155 bits (392), Expect = 9.530e-45
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    1 FDENVPRLNSVTLIGRTGSDPMA-RFFDSGKVVCTVSLAVKREYHPIERQALQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKATGEPRQKAKIRCDTFELLESKVEREARRAN 390
            F +++P+ N VTL GR G+  +  ++FD GKVV ++SLAVKR+YHP+ER+A  I  G+EETDWF LE W R AEY  K VEKG+RIGV+GSLV+D WTD+ATGEPR + KI     ++LE+K E + RR N
Sbjct:   36 FADHIPKFNVVTLSGRVGNPQLEPKYFDDGKVVLSLSLAVKRKYHPLERRAYNIKSGDEETDWFALEIWGRDAEYAAKYVEKGSRIGVTGSLVVDNWTDRATGEPRSRPKILVKQLDILETKAEADLRRKN 166          
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Match: A0A7S1ZHN3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZHN3_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.000e-43
Identity = 72/131 (54.96%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    1 FDENVPRLNSVTLIGRTGSDPMARFFDSGKVVCTVSLAVKREYHPIERQALQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKATGEPRQKAKIRCDTFELLESKVEREARRANK 393
            F+ ++P+LN VTL GR G+ P  R+FD GKVV  + LAVKR+YHP+ER+   I YG+EETDWF LE W R AE+  + V+KG+RIG++GSL ID WTDK TG+ R+K KI     ++LE+K E E RR+N+
Sbjct:  109 FEPHIPKLNVVTLSGRVGNVPEPRYFDDGKVVLNMGLAVKRKYHPLERKVKNIQYGQEETDWFNLELWGRDAEFAARFVDKGSRIGITGSLAIDSWTDKQTGQYRRKPKIVVRHLDVLETKAEAELRRSNR 239          
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Match: A0A7S2UQ80_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ80_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.810e-43
Identity = 74/131 (56.49%), Postives = 97/131 (74.05%), Query Frame = 1
Query:    1 FDENVPRLNSVTLIGRTGSDPMA-RFFDSGKVVCTVSLAVKREYHPIERQALQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKATGEPRQKAKIRCDTFELLESKVEREARRAN 390
            F +++P+ N VTL GR G+  +  ++FD GKVV ++SLAVKR+YHP+ER+A  I  G+EETDWF LE W R AEY  K VEKG+RIGV+GSLV+D WTD+ATGEPR + KI     ++LE+K E + RR N
Sbjct:  145 FADHIPKFNVVTLSGRVGNPQLEPKYFDDGKVVLSLSLAVKRKYHPLERRAYNIKSGDEETDWFALEIWGRDAEYAAKYVEKGSRIGVTGSLVVDNWTDRATGEPRSRPKILVKQLDILETKAEADLRRKN 275          
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Match: A0A1Z5KE78_FISSO (Single-strand DNA-binding protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE78_FISSO)

HSP 1 Score: 152 bits (383), Expect = 4.340e-43
Identity = 68/133 (51.13%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 FDENVPRLNSVTLIGRTGSDPMARFFDSGKVVCTVSLAVKREYHPIERQALQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKATGEPRQKAKIRCDTFELLESKVEREARRANKSG 399
            +D+ V R N+V L GR G++P  R+FD GKVV  ++LAV+R+YHP+ER+   IAYG+EETDWF LE W RTAE+  K V+KG R+ V GSL +D+WTDK +GEPR + K+     +++E++ E + RR+ +SG
Sbjct:   72 WDDTVARFNTVHLSGRIGAEPKTRYFDDGKVVVNLNLAVQRKYHPLERKHFNIAYGQEETDWFGLEIWGRTAEFASKYVDKGMRVSVIGSLQVDQWTDKESGEPRSRTKVVVRELDIMETRAEGDLRRSKRSG 204          
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Match: A0A835ZAA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA6_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.780e-42
Identity = 81/171 (47.37%), Postives = 102/171 (59.65%), Query Frame = 1
Query:    1 FDENVPRLNSVTLIGRTGSDPMARFFDSGKVVCTVSLAVKREYHPIERQALQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKATGEPRQKAKIRCDTFELLESKVEREARRANKSGXXXXXXXXXXXXXXXXXXDAGGRNDIAD--LPSFFDDF 507
            F E++P+LN+V L GR G DP+AR+FD GK V  +SLAVKREYH +ER+A+ I YGEEETDWF LE W R AEY +KV  KG R+G+ GSLVID W D+  GE R  AK+     E+LE+K E   R+                        +      +D  LPSFFD+F
Sbjct:   80 FAESIPKLNAVLLTGRLGQDPVARYFDDGKCVVQLSLAVKREYHALERKAMGIRYGEEETDWFQLELWSREAEYAMKVAAKGLRVGIEGSLVIDCWEDQE-GEERATAKVIVSNMEVLETKAEIAMRQQYDFQPRPTDGDAASAPAAQTPVKSAAATSTSDPSLPSFFDEF 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig105.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SIA7_9STRA2.700e-4658.33Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9W4H7_9STRA5.970e-4655.64Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1YYF7_TRICV1.760e-4557.81Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B8C9K7_THAPS1.780e-4558.40Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0SQT6_THAOC8.490e-4554.96Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2USN2_9STRA9.530e-4556.49Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1ZHN3_9STRA1.000e-4354.96Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2UQ80_9STRA1.810e-4356.49Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1Z5KE78_FISSO4.340e-4351.13Single-strand DNA-binding protein n=2 Tax=Fistulif... [more]
A0A835ZAA6_9STRA2.780e-4247.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig105contigH-akashiwo_Contig105:1289275..1289784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0SQT6
PFAMsSSB
Model size510
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.39e-45
EggNOG OGsCOG0629@1|root,2S5G6@2759|Eukaryota,2XD6Y@2836|Bacillariophyta
Ec32 ortholog descriptionPrimosome PriB/single-strand DNA-binding
Ec32 orthologEc-05_002550.1
DescriptionSingle-strand binding protein family
Cds size510
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.7681477-CDS-H-akashiwo_Contig105:1289274..12897841681387062.7681477-CDS-H-akashiwo_Contig105:1289274..1289784Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 1289275..1289784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig105.13.1prot_H-akashiwo_Contig105.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig105 1289275..1289784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig105.13.1

>prot_H-akashiwo_Contig105.13.1 ID=prot_H-akashiwo_Contig105.13.1|Name=mRNA_H-akashiwo_Contig105.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=170bp
FDENVPRLNSVTLIGRTGSDPMARFFDSGKVVCTVSLAVKREYHPIERQA
LQIAYGEEETDWFTLEFWDRTAEYVIKVVEKGTRIGVSGSLVIDKWTDKA
TGEPRQKAKIRCDTFELLESKVEREARRANKSGGGEGGSYSSSNNKFKNN
NDAGGRNDIADLPSFFDDF*
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mRNA from alignment at H-akashiwo_Contig105:1289275..1289784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig105.13.1 ID=mRNA_H-akashiwo_Contig105.13.1|Name=mRNA_H-akashiwo_Contig105.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=510bp|location=Sequence derived from alignment at H-akashiwo_Contig105:1289275..1289784+ (Heterosigma akashiwo CCMP452)
TTTGATGAAAATGTTCCTCGATTAAACTCGGTGACTCTTATTGGTCGAAC TGGATCTGACCCTATGGCTCGATTTTTTGACAGCGGAAAGGTAGTATGCA CAGTATCTCTTGCTGTAAAGAGGGAGTATCACCCCATCGAACGCCAAGCA CTGCAGATCGCATACGGTGAAGAGGAAACCGACTGGTTCACGCTTGAGTT TTGGGACAGAACCGCAGAGTATGTAATCAAAGTGGTAGAAAAAGGAACCC GTATCGGAGTATCTGGGAGTCTGGTTATTGATAAGTGGACTGACAAAGCC ACAGGCGAGCCCAGGCAAAAGGCAAAGATTCGATGTGATACCTTTGAACT GCTTGAAAGCAAAGTGGAAAGAGAAGCTCGCAGAGCGAACAAATCTGGTG GGGGAGAAGGTGGCTCATATAGCAGCAGCAATAATAAGTTCAAAAATAAT AATGATGCTGGCGGAAGAAATGACATTGCAGATTTGCCCTCCTTTTTTGA TGATTTTTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig105:1289275..1289784+

>mRNA_H-akashiwo_Contig105.13.1 ID=mRNA_H-akashiwo_Contig105.13.1|Name=mRNA_H-akashiwo_Contig105.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=510bp|location=Sequence derived from alignment at H-akashiwo_Contig105:1289275..1289784+ (Heterosigma akashiwo CCMP452)
TTTGATGAAAATGTTCCTCGATTAAACTCGGTGACTCTTATTGGTCGAAC
TGGATCTGACCCTATGGCTCGATTTTTTGACAGCGGAAAGGTAGTATGCA
CAGTATCTCTTGCTGTAAAGAGGGAGTATCACCCCATCGAACGCCAAGCA
CTGCAGATCGCATACGGTGAAGAGGAAACCGACTGGTTCACGCTTGAGTT
TTGGGACAGAACCGCAGAGTATGTAATCAAAGTGGTAGAAAAAGGAACCC
GTATCGGAGTATCTGGGAGTCTGGTTATTGATAAGTGGACTGACAAAGCC
ACAGGCGAGCCCAGGCAAAAGGCAAAGATTCGATGTGATACCTTTGAACT
GCTTGAAAGCAAAGTGGAAAGAGAAGCTCGCAGAGCGAACAAATCTGGTG
GGGGAGAAGGTGGCTCATATAGCAGCAGCAATAATAAGTTCAAAAATAAT
AATGATGCTGGCGGAAGAAATGACATTGCAGATTTGCCCTCCTTTTTTGA
TGATTTTTGA
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