mRNA_H-akashiwo_Contig105.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig105.12.1
Unique NamemRNA_H-akashiwo_Contig105.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig105.12.1 vs. uniprot
Match: A0A7S3UWJ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWJ4_HETAK)

HSP 1 Score: 122 bits (305), Expect = 8.230e-33
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 HKIAVVRDGGVVEQGTHDALLARRGEYYALATGRGDGKPSPDNKTFGSFFSDLLGSTRS 177
            HKIAVVRDGGVVEQGTHDALLARRGEYYALATGRGDGKPSPDNKTFGSFFSDLLGSTRS
Sbjct:   62 HKIAVVRDGGVVEQGTHDALLARRGEYYALATGRGDGKPSPDNKTFGSFFSDLLGSTRS 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig105.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UWJ4_HETAK8.230e-33100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig105contigH-akashiwo_Contig105:1046179..1046670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size492
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.5137382-UTR-H-akashiwo_Contig105:1046178..10462001681387062.5137382-UTR-H-akashiwo_Contig105:1046178..1046200Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig105 1046179..1046200 +
1681387062.5387938-UTR-H-akashiwo_Contig105:1046668..10466701681387062.5387938-UTR-H-akashiwo_Contig105:1046668..1046670Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig105 1046669..1046670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.526234-CDS-H-akashiwo_Contig105:1046200..10466681681387062.526234-CDS-H-akashiwo_Contig105:1046200..1046668Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 1046201..1046668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig105.12.1prot_H-akashiwo_Contig105.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig105 1046201..1046668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig105.12.1

>prot_H-akashiwo_Contig105.12.1 ID=prot_H-akashiwo_Contig105.12.1|Name=mRNA_H-akashiwo_Contig105.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=156bp
MAVWWSRALMMPCWPDVGSTMLWPRAVGMESLLQTIKPLAASFQIFWGPL
VLKKQAASLWTIRNKINDNSFLEDRWDEGVHVIPSAWMLLYMSRKFKARY
LIEQICQTASQNIMCVCVLQHDTTSPVCLLTDYIFIGVFPLLMFAGRLIM
PVCVH*
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mRNA from alignment at H-akashiwo_Contig105:1046179..1046670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig105.12.1 ID=mRNA_H-akashiwo_Contig105.12.1|Name=mRNA_H-akashiwo_Contig105.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=492bp|location=Sequence derived from alignment at H-akashiwo_Contig105:1046179..1046670+ (Heterosigma akashiwo CCMP452)
CACAAGATTGCCGTGGTGAGGGATGGCGGTGTGGTGGAGCAGGGCACTCA
TGATGCCTTGCTGGCCCGACGTGGGGAGTACTATGCTTTGGCCACGGGCC
GTGGGGATGGAAAGCCTTCTCCAGACAATAAAACCTTTGGCAGCTTCTTT
TCAGATCTTCTGGGGTCCACTCGTTCTTAAGAAACAAGCAGCATCTCTGT
GGACAATCCGAAACAAAATAAATGACAACAGCTTTTTGGAAGATAGGTGG
GATGAGGGTGTGCACGTCATCCCAAGCGCTTGGATGCTTCTATACATGTC
GAGGAAGTTCAAGGCCCGATACCTGATTGAGCAGATTTGCCAAACAGCAA
GTCAAAATATAATGTGTGTGTGTGTTTTGCAACATGATACTACCTCTCCT
GTTTGCTTGTTGACGGATTACATTTTCATTGGGGTTTTCCCTCTTCTAAT
GTTCGCAGGAAGATTAATCATGCCAGTATGTGTTCATTAGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig105:1046179..1046670+

>mRNA_H-akashiwo_Contig105.12.1 ID=mRNA_H-akashiwo_Contig105.12.1|Name=mRNA_H-akashiwo_Contig105.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=468bp|location=Sequence derived from alignment at H-akashiwo_Contig105:1046179..1046670+ (Heterosigma akashiwo CCMP452)
ATGGCGGTGTGGTGGAGCAGGGCACTCATGATGCCTTGCTGGCCCGACGT
GGGGAGTACTATGCTTTGGCCACGGGCCGTGGGGATGGAAAGCCTTCTCC
AGACAATAAAACCTTTGGCAGCTTCTTTTCAGATCTTCTGGGGTCCACTC
GTTCTTAAGAAACAAGCAGCATCTCTGTGGACAATCCGAAACAAAATAAA
TGACAACAGCTTTTTGGAAGATAGGTGGGATGAGGGTGTGCACGTCATCC
CAAGCGCTTGGATGCTTCTATACATGTCGAGGAAGTTCAAGGCCCGATAC
CTGATTGAGCAGATTTGCCAAACAGCAAGTCAAAATATAATGTGTGTGTG
TGTTTTGCAACATGATACTACCTCTCCTGTTTGCTTGTTGACGGATTACA
TTTTCATTGGGGTTTTCCCTCTTCTAATGTTCGCAGGAAGATTAATCATG
CCAGTATGTGTTCATTAG
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