mRNA_H-akashiwo_Contig105.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig105.11.1
Unique NamemRNA_H-akashiwo_Contig105.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Match: A0A7S3UWJ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWJ4_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 1.540e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   25 QRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGLQAR 153
            QRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGLQAR
Sbjct:    1 QRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGLQAR 43
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BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Match: A0A836CDG9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.320e-15
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 ALLSGGQKQRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGLQA 150
            ALLSGGQKQRIAIARA+L  PAILLLDEATSALDNESER+VQ ALD LQ+
Sbjct: 1119 ALLSGGQKQRIAIARAILRNPAILLLDEATSALDNESERQVQMALDHLQS 1168
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BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Match: A0A836CNL1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNL1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.450e-15
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 ALLSGGQKQRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGLQA 150
            ALLSGGQKQRIAIARA+L  PAILLLDEATSALDNESER+VQ ALD L+A
Sbjct: 1436 ALLSGGQKQRIAIARAILKNPAILLLDEATSALDNESERQVQAALDRLRA 1485
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BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Match: A0A835ZHI0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.350e-15
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 ALLSGGQKQRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGLQA 150
            ALLSGGQKQRIAIARA+L  PAILLLDEATSALDNESER+VQ ALD L+A
Sbjct:  703 ALLSGGQKQRIAIARAILKNPAILLLDEATSALDNESERQVQAALDCLRA 752
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BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Match: A0A836CGZ9_9STRA (ATP-binding cassette, sub-family B, member 1A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.170e-14
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 ALLSGGQKQRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGLQA 150
            ALLSGGQKQRIAIARA+L  P ILLLDEATSALDNESER+VQ ALD LQ+
Sbjct: 1112 ALLSGGQKQRIAIARAILRNPNILLLDEATSALDNESERQVQAALDHLQS 1161
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BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Match: A0A835Z4J1_9STRA (ATP-binding cassette, sub-family B, member 1A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-14
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 ALLSGGQKQRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGLQA 150
            ALLSGGQKQRIAIARA+L  P I+LLDEATSALDNESER+VQ ALD LQ+
Sbjct: 1256 ALLSGGQKQRIAIARAILRNPNIVLLDEATSALDNESERQVQAALDRLQS 1305
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BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Match: A0A1S8X249_9TREM (ABC transporter, ATP-binding protein n=2 Tax=Opisthorchis viverrini TaxID=6198 RepID=A0A1S8X249_9TREM)

HSP 1 Score: 73.9 bits (180), Expect = 4.060e-14
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    7 LSGGQKQRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGL 144
            LSGGQKQR+AIARA++ +PA+LLLDEATSALDNESER VQQALDG+
Sbjct:  447 LSGGQKQRVAIARALIRKPALLLLDEATSALDNESERIVQQALDGI 492
[Close]
BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Match: A0A4V6RH95_OPIFE (Uncharacterized protein n=2 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4V6RH95_OPIFE)

HSP 1 Score: 73.9 bits (180), Expect = 4.070e-14
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    7 LSGGQKQRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGL 144
            LSGGQKQR+AIARA++ +PA+LLLDEATSALDNESER VQQALDG+
Sbjct: 1145 LSGGQKQRVAIARALIRKPALLLLDEATSALDNESERIVQQALDGI 1190
[Close]
BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Match: G7YP25_CLOSI (Multidrug resistance protein 1 (Fragment) n=2 Tax=Clonorchis sinensis TaxID=79923 RepID=G7YP25_CLOSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.070e-14
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    7 LSGGQKQRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGL 144
            LSGGQKQR+AIARA++ +PA+LLLDEATSALDNESER VQQALDG+
Sbjct: 1081 LSGGQKQRVAIARALIRKPALLLLDEATSALDNESERIVQQALDGI 1126
[Close]
BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Match: A0A1V9Y9A5_9STRA (ATP-binding Cassette (ABC) Superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y9A5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.600e-14
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 ALLSGGQKQRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGL 144
            A LSGGQKQRIAIARA++G PAILLLDEATSALDNESER VQ +LD L
Sbjct: 1144 AQLSGGQKQRIAIARAIIGDPAILLLDEATSALDNESERVVQASLDAL 1191
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig105.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UWJ4_HETAK1.540e-17100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CDG9_9STRA1.320e-1586.00ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A836CNL1_9STRA2.450e-1586.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A835ZHI0_9STRA3.350e-1586.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A836CGZ9_9STRA1.170e-1484.00ATP-binding cassette, sub-family B, member 1A n=1 ... [more]
A0A835Z4J1_9STRA2.980e-1482.00ATP-binding cassette, sub-family B, member 1A n=2 ... [more]
A0A1S8X249_9TREM4.060e-1482.61ABC transporter, ATP-binding protein n=2 Tax=Opist... [more]
A0A4V6RH95_OPIFE4.070e-1482.61Uncharacterized protein n=2 Tax=Opisthorchis felin... [more]
G7YP25_CLOSI4.070e-1482.61Multidrug resistance protein 1 (Fragment) n=2 Tax=... [more]
A0A1V9Y9A5_9STRA7.600e-1483.33ATP-binding Cassette (ABC) Superfamily n=1 Tax=Ach... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig105contigH-akashiwo_Contig105:1045651..1045803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHL4
PFAMsABC_membrane,ABC_tran
Model size153
Max annot lvl2759|Eukaryota
KEGG koko:K05658
KEGG TC3.A.1.201
KEGG Pathwayko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.5e-16
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota
EC3.6.3.44
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size153
COG categoryV
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387062.7425346-CDS-H-akashiwo_Contig105:1045650..10458031681387062.7425346-CDS-H-akashiwo_Contig105:1045650..1045803Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig105 1045651..1045803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig105.11.1prot_H-akashiwo_Contig105.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig105 1045651..1045803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig105.11.1

>prot_H-akashiwo_Contig105.11.1 ID=prot_H-akashiwo_Contig105.11.1|Name=mRNA_H-akashiwo_Contig105.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=51bp
ALLSGGQKQRIAIARAVLGRPAILLLDEATSALDNESEREVQQALDGLQA
R
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mRNA from alignment at H-akashiwo_Contig105:1045651..1045803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig105.11.1 ID=mRNA_H-akashiwo_Contig105.11.1|Name=mRNA_H-akashiwo_Contig105.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=153bp|location=Sequence derived from alignment at H-akashiwo_Contig105:1045651..1045803+ (Heterosigma akashiwo CCMP452)
GCGCTGCTCTCCGGCGGGCAGAAGCAGCGGATCGCGATTGCTCGGGCGGT
GCTGGGCCGCCCGGCGATCCTGCTGCTGGATGAGGCCACCTCTGCGCTAG
ACAACGAGAGCGAGCGGGAGGTGCAGCAGGCGCTGGACGGGCTCCAGGCC
AGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig105:1045651..1045803+

>mRNA_H-akashiwo_Contig105.11.1 ID=mRNA_H-akashiwo_Contig105.11.1|Name=mRNA_H-akashiwo_Contig105.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=153bp|location=Sequence derived from alignment at H-akashiwo_Contig105:1045651..1045803+ (Heterosigma akashiwo CCMP452)
GCGCTGCTCTCCGGCGGGCAGAAGCAGCGGATCGCGATTGCTCGGGCGGT
GCTGGGCCGCCCGGCGATCCTGCTGCTGGATGAGGCCACCTCTGCGCTAG
ACAACGAGAGCGAGCGGGAGGTGCAGCAGGCGCTGGACGGGCTCCAGGCC
AGG
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