mRNA_H-akashiwo_Contig1048.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1048.4.1
Unique NamemRNA_H-akashiwo_Contig1048.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Match: A0A7S3LC45_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LC45_9STRA)

HSP 1 Score: 200 bits (508), Expect = 9.110e-58
Identity = 111/258 (43.02%), Postives = 157/258 (60.85%), Query Frame = 2
Query:   77 LNEEVERKTCKAVQESKASGKPLGVAYEAVLKPMSVDGIWAGSPVYVRRSLMPTILVGSLGAIMMALSAPQCGLFPSMVCALVMFLWFDLYSGMLHVVLDEPLNISSPIIGQPALEFQWHHFIPTDIVRKDFSDVVGDLNVPVIAMGVIHCFYSTALLSEPIPMLLASLKLFWAWYGQASHRFAHNPKISQIPIAK------FLVAVKHHKAHHQPPHEEDYCLIGIMNPMIDAMRTVSTNRFVWLGVFLSASIFDVV 832
            LNE V + T K VQ++K +G+ L  A E V     +  + AGSPVY  RS +         A+++   A       + +C L MFL +D YSG+LHVVLD P NI+ PI+GQP LEFQWHH IP D+VRKDF DV GDLNV V+ +  I+ +     L+  + M++  LKL+ A++GQ SH+ AH    ++   A       F+++ K H +HH+PP++ D+CLIG  NP IDA+R+++TN   WL +F   SI D+V
Sbjct:   72 LNERVVKITAKEVQKAKQAGRKL--APEFVYAQQKMTTLTAGSPVYQLRSSVLVYAYAIGTALLILKGATMLHPLTTALCVLTMFLGYDFYSGVLHVVLDHPDNIALPILGQPCLEFQWHHAIPDDLVRKDFVDVCGDLNVVVMILAAINLYLLD--LNSGVAMVIGGLKLWMAYFGQFSHKSAHAFGPARGGFATWLQKYGFMISCKDHMSHHKPPYDVDFCLIGFCNPAIDALRSLTTNNAAWLSLFFVWSILDLV 325          
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Match: A0A6U5EGY9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5EGY9_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.780e-48
Identity = 103/274 (37.59%), Postives = 151/274 (55.11%), Query Frame = 2
Query:   68 IHKLNEEVERKTCKAVQE-------SKASGK-----PLGVAYEAVLKPMSVDGIWAGSPVYVRRSLMPTILVGSLGAIMMALSAPQCGLFPSMVCALVMFLWFDLYSGMLHVVLDEPLNISSPIIGQPALEFQWHHFIPTDIVRKDFSDVVGDLNVPVIAMGVIHCFYSTALLSEPIP---MLLASLKLFWAWYGQASHRFAHN-----PKISQ-IPIAKFLVAVKHHKAHHQPPHEEDYCLIGIMNPMIDAMRTVSTNRFVWLGVFLSASIFD 826
            I  LN++VE+ T  A+ E       S+  G            E V     +  + AG+PVY  RS         +   M+     Q  LF + +  L +FL +DLYSG+LHVV D P NI  P++GQP LEFQWHH IP D+VRKDF DV GDLN   + +  ++ +       E +    ++LA  KL+  ++GQ SHR AH+     P+++  +     +++ + H +HH+PPH+ D+CLIG+ NP++ AMR V+ NR  WL VFL+ S+ D
Sbjct:   49 IDALNDKVEKLTAAALAEHASALRRSRLPGPHDXXXXXXXXLEYVYAQRKMTTMVAGTPVYQLRSAYAVFSYLLITLAMIVYGMSQISLFATSLSLLTIFLGYDLYSGVLHVVFDHPDNIRLPVLGQPCLEFQWHHKIPDDLVRKDFVDVCGDLNTVALILFFVYGYLLFGPHREGVSGAALVLAGSKLWMGYFGQFSHRSAHSYGKHCPRLAAWLQKRGLMISPRAHLSHHKPPHDTDFCLIGVCNPIVAAMRRVTLNRHAWLAVFLTWSVLD 322          
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Match: A0A7S3PX68_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PX68_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.460e-42
Identity = 95/298 (31.88%), Postives = 160/298 (53.69%), Query Frame = 2
Query:    8 MCQTDKMNEDVRTVASGRILIHKLNEEVERKTCKAVQESKASGKPLGVAYEAVLKPMSVDGIW-----AGSPVYVRRSLMPTILVGSLGAIMMALSAPQCGLFPSMVCALVMFLWFDLYSGMLHVVLDEPLNISSPIIGQPALEFQWHHFIPTDIVRKDFSDVVGDLNVPVIAMGVIHC--FYSTALLSEPIPMLLASLKLFWAWYGQASHRFAHNPK------ISQIPIAKFLVAVKHHKAHHQPPHEEDYCLIGIMNPMIDAM-RTVSTNRFVWLGVFLSASIFDVVLLTAVVRKV 859
            MC+ D  N+D   +         L E+V++   K  +++K   K +    + VLK  S   +W     AG+P+YV R+    I+     A+++A +     L   ++C +   + +D+ SG LH+V D+  N+  P++GQP LEFQ HH  P D+V++D  DV+GDLN     + V++   ++     +      +  +KLF A+YGQ SHR AH P       I  +    F++ +  H++HH+PPH++D+CL+GI NP+I+ M   V+ NR+ W+  F   ++F + L   V+ +V
Sbjct:    1 MCRAD-FNKDPNAI---------LEEQVQKLILK--EQAKEQTKDV----DPVLKIASQPQLWGSLKRAGTPIYVPRTHSLVIVYSIFSALILAWAIHDTSLLHFILCIIGSLVGYDILSGFLHIVFDDTRNLCLPVLGQPCLEFQMHHHFPYDLVKRDLLDVLGDLNTVTGILAVLNICPYFFCDPWNNTTHRFMLGMKLFMAYYGQFSHRSAHTPSSVHNKYIEALRKIGFMIPLDVHRSHHRPPHDKDFCLVGICNPLINFMYHHVTRNRWFWMCGFFGVALFGIPLEAYVMDRV 282          
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Match: A0A8J2S8L3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8L3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.850e-33
Identity = 85/224 (37.95%), Postives = 124/224 (55.36%), Query Frame = 2
Query:  200 GSPVYVRRSLMPTILVGSLGAIMMALSAPQCGLFPSMVCALVMFLWFDLYSGMLHVVLDEPLN---ISSPIIGQPALEFQWHHFIPTDIVRKDFSDVVGDLNVPVIAMGVIHCFYSTALL--SEPIPMLLASLKLFWAWYGQASHRFAHNPKISQIPIAKFLVAV------KHHKAHHQPPHEEDYCLIGIMNPMIDAM-RTVSTNRFVWLGVFLSASIFDVVL 835
            G+ VY  R +    ++G++   +   +AP    F  M+ A  M+L +D YSG+LHV LD+P N   + S I+ Q  LEFQWHH IP D   K F     DLN+ V+ + V++C     LL  +      L  LKLF+A++GQ  HR AH PK  +    +FL +         H  HH+PPH+E++CLIG M+P ++ + +   TN +VW G++L  S  DV L
Sbjct:   76 GALVYPNRIVWLPWVMGAVAGYLCT-TAPSLRAFLWMLPA--MYLGYDFYSGVLHVALDDPKNMQGVKSYILFQGCLEFQWHHAIPYDGASKPFIACCADLNIIVLILMVLNC----GLLGYTSGTRAALTGLKLFFAYFGQYCHRAAHTPKSKRPQWVQFLQSTGFMTPQAKHNGHHRPPHDENFCLIGKMDPAVNGLIKLCGTNDWVWFGLWLGLSCCDVAL 292          
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Match: A0A7S1VG18_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Sexangularia sp. CB-2014 TaxID=1486929 RepID=A0A7S1VG18_9EUKA)

HSP 1 Score: 129 bits (323), Expect = 2.430e-31
Identity = 93/275 (33.82%), Postives = 125/275 (45.45%), Query Frame = 2
Query:   68 IHKLNEEVERKTCKAVQESKASGKPLGVAYEAVLKPMSVDGIWAGSPVYVRRSLMPTILVGSLGAIMMALSAPQCGLFPSMVCALVMFLWFDLYSGMLHVVLDEPLNISSPIIGQPALEFQWHHFIPTDIVRKDFSDVVGDLNVPVIAMGVIHCFYSTALL-----SEPIPMLLASLKLFWAWYGQASHRFAHNPK------ISQIPIAKFLVAVKHHKAHHQPPHEEDYCLIGIMNPMIDAMRTVSTNRFVWLGVFLSASIFDVVLLTAVVRKV 859
            I KLN  V  KT           K  GV +E V           G+ VY  R       +  +    + + AP      S+   L+M+ W DLY  +LHVVLD P  I+ P I    LEFQWHH IP+DI RK+F +V GDLN  V A  V+  F     L        + M L   K   A++GQ SHR AH P+      + Q+  A  ++    HK HH         L G  N +I A+     N + WLG F+  ++FDVVL T ++  +
Sbjct:   11 IDKLNARVAEKTANV-----NGAKAKGVEFEQVR---------LGAQVYHHRFRSIVYGLALISTYFVTVGAPSVA--ASVASLLLMYFWVDLYGAVLHVVLDNPKFITLPGIDAGCLEFQWHHHIPSDITRKEFVEVCGDLN-GVAAFHVVFIFGVLKYLLRWDFDTNLAMTLMGAKALLAYFGQYSHRMAHTPESLRPSIVRQLQAAHIMLPATIHKKHHDTYDGSFPILSGHTNGLISALLDKVPNDYAWLGTFVVMTLFDVVLFTKLLAPI 268          
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Match: A0A0V0QU69_PSEPJ (Lipid_desat domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QU69_PSEPJ)

HSP 1 Score: 129 bits (324), Expect = 5.940e-31
Identity = 69/187 (36.90%), Postives = 109/187 (58.29%), Query Frame = 2
Query:  329 FLWFDLYSGMLHVVLDEPLNI---SSPIIGQPALEFQWHHFIPTDIVRKDFSDVVGDLNVPVIAMGVIHCFYST-ALLSEPIPMLLASLKLFWAWYGQASHRFAHNPK------ISQIPIAKFLVAVKHHKAHHQPPHEEDYCL-IGIMNPMIDAMRTVSTNRFVWLGVFLSASIFDVVLLTAVVRK 856
            F W+DL+SG+LHV LD+P N+    S I+ +P LEFQWHH IP DI  K +   +GDLN     +G+I  F     +LS P  M+L+  K F+A+YGQ SH+ +H  +      ++ +  +  L++ K HK HH   H++++C+  G  N +I ++  ++TN  VW  +F  +  FD   L+ ++ K
Sbjct:  138 FFWYDLFSGILHVCLDDPRNLIGWRSAILYKPCLEFQWHHVIPADIASKPYYQSIGDLN---FVVGLIFAFQCCMGILSNPTAMVLSGFKFFFAYYGQFSHKMSHTFEGDRSIFVNLLQKSHILLSEKDHKVHHTN-HDDNFCIGSGTFNGVIRSLLKITTNPNVWFCIFGYSLFFDAFTLSFIIDK 320          
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Match: D7FL42_ECTSI (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL42_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 7.810e-26
Identity = 65/193 (33.68%), Postives = 105/193 (54.40%), Query Frame = 2
Query:  287 QCGLFPSMVCALVMFLWFDLYSGMLHVVLDEPLNISSPIIGQPALEFQWHHFIPTDIVRKDFSDVVGDLNVPVIAMGVIHCFYSTALL----SEPIPMLLAS-LKLFWAWYGQASHRFAHNPKISQIPIAKFL------VAVKHHKAHHQPPHEEDYCLIGIMNPMIDAMRTVSTNRFVWLGVFLSASIFDVV 832
            +CG+ P++    VM+   D YSG+LHVVLD+  N++ P++ QPA+EFQ+HH IP D   + F + +GDLN     +G +H    TAL     S+   +L A   K+  A++G  +HR AH  K  +     +L      ++   HK HH PPH+++YCL+G+    +  +   +     W+ +FL  +  D +
Sbjct:   73 ECGVAPTVGAFAVMYFVLDFYSGVLHVVLDDDWNMNVPLLSQPAMEFQYHHHIPDDGCSRPFVEGMGDLN---FIVG-LHLALFTALFVRGGSQDFMLLTAGGWKMVLAYWGIWNHRQAHQLKSKRPRWCTYLQNNGIMLSPAAHKVHHTPPHDDEYCLLGVTTWPVTWLGRRNLGSIFWIALFLGLTALDTI 261          
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Match: A0A6H5L5I7_9PHAE (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.170e-25
Identity = 66/193 (34.20%), Postives = 104/193 (53.89%), Query Frame = 2
Query:  287 QCGLFPSMVCALVMFLWFDLYSGMLHVVLDEPLNISSPIIGQPALEFQWHHFIPTDIVRKDFSDVVGDLNVPVIAMGVIHCFYSTALL----SEPIPMLLAS-LKLFWAWYGQASHRFAHNPKISQIPIAKFL------VAVKHHKAHHQPPHEEDYCLIGIMNPMIDAMRTVSTNRFVWLGVFLSASIFDVV 832
            +CG+ P++    VM+   D YSG+LHVVLD+  N+  P++ QPA+EFQ+HH IP D   + F + +GDLN     +G +H    TAL     S+   +L A   K+  A++G  +HR AH  K  +     +L      ++   HK HH PPH+++YCL+G+    +  +   +     W+ +FL  +  D V
Sbjct:  178 ECGVAPTVGAFAVMYFVLDFYSGVLHVVLDDDWNMKVPLLSQPAMEFQYHHHIPDDGCSRPFVEGMGDLN---FIVG-LHLALFTALFVRGGSQDFMLLTAGGWKMVLAYWGIWNHRQAHQLKSKRPRWCTYLQNNGIMLSPAAHKVHHTPPHDDEYCLLGVTTWPVTWLGRRNLGSIFWIALFLGLTALDTV 366          
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Match: A0A7Y2FPK9_9DELT (Lipid_desat domain-containing protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y2FPK9_9DELT)

HSP 1 Score: 99.8 bits (247), Expect = 1.880e-20
Identity = 60/188 (31.91%), Postives = 90/188 (47.87%), Query Frame = 2
Query:  323 VMFLWFDLYSGMLHVVLDEPLNISSPIIGQPALEFQWHHFIPTDIVRKDFSDVVGDLNVPVIAMGVIH---CFYSTALLSEPIPMLLASLKLFWAWYGQASHRFAHNPKISQIPIA------KFLVAVKHHKAHHQPPHEEDYCLIGIMNPMIDAMRTVSTNRFVWLGVFLSASIFDVVLLTAVVRKV 859
            V + + D YSG+LHVVLD P  +  P+IG P +EFQWHH  P DI  +   DV GDLNV ++         C +ST         ++A +   W +  Q SHR AH    ++  +A      + L+    H  HH    +    L G    +I  M  V  N + WL +F+  +  D+V +  +V ++
Sbjct:   91 VFYFYIDFYSGVLHVVLDNPRFVRLPLIGVPCVEFQWHHTFPYDISTRRLFDVWGDLNVLLLVKSAFLFGICGFSTT------TFMVAGVGYAWGYANQFSHRLAHTAPRNRPKLAVWMQEHRLLMPPAVHHVHHNDHTQAFPVLSGHSRGLIQGMLRVIPNGYFWLVLFVVLTALDLVAICWLVDRI 272          
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Match: A0A4D9D5K9_9STRA (Lipid_desat domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5K9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.720e-15
Identity = 53/172 (30.81%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  329 FLWFDLYSGMLHVVLDEPLNISSPIIGQPALEFQWHHFIPTDIVRKDFSDVVGDLNVPVIAMGVIHCFYSTALLSEPIPMLLASLKLFWAWYGQASHRFAHNPKISQIPIAK------FLVAVKHHKAHHQPPHEEDYCLIGIMNPMIDAM-RTVSTNRFVWLGVFLSASIF 823
            +++ +LYS +LH+VLD P  I  P + QP  EF  HH +P +I ++ + D+ GDLNV V  +  I+      +    +  ++A+     A+ GQ +HR AH P     P A+       LV+   H+AHH+        L G    +I  +   V  +++VWL +F   ++F
Sbjct:  113 YVYMELYSAVLHIVLDNPAFIKVPGLDQPVFEFLAHHILPVEIAQRRYRDICGDLNVIVGLIFAINLLLFDWMKDGRVMCVVAAGGAM-AYLGQFAHRQAHMPPSKVSPFARALQDAGLLVSPHLHRAHHRTYDRGFAILGGWSEGLITTLYHHVVPSQYVWLALFAVMTVF 283          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1048.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A7S3LC45_9STRA9.110e-5843.02Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6U5EGY9_9STRA1.780e-4837.59Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3PX68_9STRA3.460e-4231.88Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8J2S8L3_9STRA3.850e-3337.95Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1VG18_9EUKA2.430e-3133.82Hypothetical protein (Fragment) n=1 Tax=Sexangular... [more]
A0A0V0QU69_PSEPJ5.940e-3136.90Lipid_desat domain-containing protein n=1 Tax=Pseu... [more]
D7FL42_ECTSI7.810e-2633.68Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L5I7_9PHAE5.170e-2534.20Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A7Y2FPK9_9DELT1.880e-2031.91Lipid_desat domain-containing protein n=1 Tax=Myxo... [more]
A0A4D9D5K9_9STRA2.720e-1530.81Lipid_desat domain-containing protein n=2 Tax=Mono... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1048contigH-akashiwo_Contig1048:173165..174254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009041782.1
PFAMsTMEM189_B_dmain
Model size1090
Max annot lvl2759|Eukaryota
KEGG koko:K20417
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.51e-33
EggNOG OGs2EVZ8@1|root,2SXVU@2759|Eukaryota
Ec32 ortholog descriptionB-domain containing protein Kua
Ec32 orthologEc-05_006720.1
EC1.14.19.43
DescriptionB domain of TMEM189, localisation domain
Cds size882
COG categoryS
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.9663353-UTR-H-akashiwo_Contig1048:173164..1731711681387061.9663353-UTR-H-akashiwo_Contig1048:173164..173171Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1048 173165..173171 +
1681387061.9871788-UTR-H-akashiwo_Contig1048:174053..1742541681387061.9871788-UTR-H-akashiwo_Contig1048:174053..174254Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1048 174054..174254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.9774427-CDS-H-akashiwo_Contig1048:173171..1740531681387061.9774427-CDS-H-akashiwo_Contig1048:173171..174053Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1048 173172..174053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1048.4.1prot_H-akashiwo_Contig1048.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1048 173172..174053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1048.4.1

>prot_H-akashiwo_Contig1048.4.1 ID=prot_H-akashiwo_Contig1048.4.1|Name=mRNA_H-akashiwo_Contig1048.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=294bp
MCQTDKMNEDVRTVASGRILIHKLNEEVERKTCKAVQESKASGKPLGVAY
EAVLKPMSVDGIWAGSPVYVRRSLMPTILVGSLGAIMMALSAPQCGLFPS
MVCALVMFLWFDLYSGMLHVVLDEPLNISSPIIGQPALEFQWHHFIPTDI
VRKDFSDVVGDLNVPVIAMGVIHCFYSTALLSEPIPMLLASLKLFWAWYG
QASHRFAHNPKISQIPIAKFLVAVKHHKAHHQPPHEEDYCLIGIMNPMID
AMRTVSTNRFVWLGVFLSASIFDVVLLTAVVRKVCIMAGNPVA*
back to top

mRNA from alignment at H-akashiwo_Contig1048:173165..174254+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1048.4.1 ID=mRNA_H-akashiwo_Contig1048.4.1|Name=mRNA_H-akashiwo_Contig1048.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1090bp|location=Sequence derived from alignment at H-akashiwo_Contig1048:173165..174254+ (Heterosigma akashiwo CCMP452)
TCTAGCCATGTGCCAGACCGACAAGATGAATGAGGATGTTAGGACTGTTG CGTCAGGGCGAATATTAATCCACAAGCTGAATGAGGAGGTGGAGAGGAAA ACCTGCAAAGCTGTACAGGAATCAAAAGCATCAGGGAAGCCCCTTGGTGT TGCATACGAAGCCGTATTGAAGCCAATGAGCGTTGATGGTATTTGGGCAG GGTCGCCCGTCTATGTGCGGCGGTCTCTTATGCCCACAATTTTGGTGGGA AGTTTGGGAGCCATAATGATGGCACTGTCTGCACCTCAGTGTGGGCTGTT CCCGTCAATGGTCTGTGCCCTTGTCATGTTTCTATGGTTCGATCTCTATT CAGGGATGCTGCACGTAGTCCTTGATGAGCCCCTGAACATTAGTTCACCT ATCATAGGCCAGCCTGCCTTAGAGTTCCAGTGGCATCATTTCATTCCCAC TGACATCGTTCGCAAGGACTTCTCCGATGTGGTCGGTGATCTGAACGTCC CTGTCATTGCCATGGGTGTCATCCACTGTTTTTATTCAACTGCTTTGCTG TCTGAACCAATCCCCATGCTACTGGCTTCACTAAAACTCTTCTGGGCTTG GTATGGGCAGGCATCTCACCGTTTCGCCCATAATCCCAAGATCAGTCAGA TCCCAATCGCCAAATTTCTGGTCGCTGTAAAACATCACAAAGCGCATCAC CAACCCCCTCATGAGGAGGACTACTGCCTGATTGGCATTATGAATCCAAT GATAGATGCCATGAGGACTGTCAGTACCAATCGGTTTGTGTGGCTGGGCG TATTTCTCTCTGCCTCCATCTTTGATGTTGTATTATTGACTGCTGTGGTA CGAAAGGTTTGCATCATGGCCGGTAATCCAGTAGCCTAGGTTATTATTGG ATCACTATTCTTGGCTGGCTAGCAGATGATGGTTGCTATTCTGTTTGCTG ATTGATGATTTATGTTGCTCTGTGCTATTGATTCGTTGGCATTTTGTTGT ATCCTCACGCGCTTTGCATTTCCGTTTCTAATGGTTTTTTAGCGGGGGAG AGGCCGTGATGTGGTTGTGCTGCCTTGGTGGCAGGTTCTA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1048:173165..174254+

>mRNA_H-akashiwo_Contig1048.4.1 ID=mRNA_H-akashiwo_Contig1048.4.1|Name=mRNA_H-akashiwo_Contig1048.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=882bp|location=Sequence derived from alignment at H-akashiwo_Contig1048:173165..174254+ (Heterosigma akashiwo CCMP452)
ATGTGCCAGACCGACAAGATGAATGAGGATGTTAGGACTGTTGCGTCAGG
GCGAATATTAATCCACAAGCTGAATGAGGAGGTGGAGAGGAAAACCTGCA
AAGCTGTACAGGAATCAAAAGCATCAGGGAAGCCCCTTGGTGTTGCATAC
GAAGCCGTATTGAAGCCAATGAGCGTTGATGGTATTTGGGCAGGGTCGCC
CGTCTATGTGCGGCGGTCTCTTATGCCCACAATTTTGGTGGGAAGTTTGG
GAGCCATAATGATGGCACTGTCTGCACCTCAGTGTGGGCTGTTCCCGTCA
ATGGTCTGTGCCCTTGTCATGTTTCTATGGTTCGATCTCTATTCAGGGAT
GCTGCACGTAGTCCTTGATGAGCCCCTGAACATTAGTTCACCTATCATAG
GCCAGCCTGCCTTAGAGTTCCAGTGGCATCATTTCATTCCCACTGACATC
GTTCGCAAGGACTTCTCCGATGTGGTCGGTGATCTGAACGTCCCTGTCAT
TGCCATGGGTGTCATCCACTGTTTTTATTCAACTGCTTTGCTGTCTGAAC
CAATCCCCATGCTACTGGCTTCACTAAAACTCTTCTGGGCTTGGTATGGG
CAGGCATCTCACCGTTTCGCCCATAATCCCAAGATCAGTCAGATCCCAAT
CGCCAAATTTCTGGTCGCTGTAAAACATCACAAAGCGCATCACCAACCCC
CTCATGAGGAGGACTACTGCCTGATTGGCATTATGAATCCAATGATAGAT
GCCATGAGGACTGTCAGTACCAATCGGTTTGTGTGGCTGGGCGTATTTCT
CTCTGCCTCCATCTTTGATGTTGTATTATTGACTGCTGTGGTACGAAAGG
TTTGCATCATGGCCGGTAATCCAGTAGCCTAG
back to top