mRNA_H-akashiwo_Contig1046.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1046.7.1
Unique NamemRNA_H-akashiwo_Contig1046.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 342 bits (877), Expect = 5.860e-109
Identity = 169/175 (96.57%), Postives = 171/175 (97.71%), Query Frame = 1
Query:    1 ELSRIKKAISLGYNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEACEKFQARSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAI 525
            ELSRIKKAISLGYNVSDMG++   LGIKVQRDRTARTITLSQHSFIEEACEKFQ RSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAI
Sbjct:  694 ELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAI 868          
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 112 bits (280), Expect = 1.580e-26
Identity = 61/174 (35.06%), Postives = 101/174 (58.05%), Query Frame = 1
Query:    4 LSRIKKAISLGYNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEACEKFQARSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAI 525
            +S  K++++  Y+++D G+L   LGIKV RD+  +   LSQ SFI++A  KF          P++  +D+         LS  +A  +RS+VGT+ W+A WT PE+A+++H L +   +P      A     RYL  T+ + + LGG L L A++D+DFC++R  G+S +G+ +
Sbjct:   50 VSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELS--DANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYIL 221          
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Match: A0A7R9V9Z0_9CHLO (Hypothetical protein n=2 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V9Z0_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 2.130e-21
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 1
Query:    1 ELSRIKKAISLGYNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEACEKFQARSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN--LTAYADADFCSERHKGRSRSGFAI 525
            E+  +K A+   +++ D+G +   +G++V RDR ART+ L Q + I    E+F     +P   P+  G+D  +  D    L   EA  +R +VG++ ++A+ T P+++Y + TLSK    P +  ++A+ HLL+YL  T+  G+  G      L  Y D+D+ S++   +SR+GF  
Sbjct:  547 EVDEVKAALRAVFDIKDLGPVSSFVGMRVTRDREARTLKLDQETMITSVLERFNMEECKPAKLPMIDGLD-GMQGDA---LDQVEATTYREMVGSLIYVAVNTRPDISYGVSTLSKNMARPCSQHMSAAKHLLKYLQGTKGLGIVFGQNQEEGLQGYVDSDWASDKSDRKSRTGFVF 719          
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Match: A0A0C3AUA9_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AUA9_9AGAM)

HSP 1 Score: 93.6 bits (231), Expect = 8.850e-20
Identity = 55/176 (31.25%), Postives = 96/176 (54.55%), Query Frame = 1
Query:   13 IKKAISLGYNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEACEKFQARSYEPVTNPVNKGIDVN-----INTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAI 525
            ++KAI   Y +S  G+L   LG+++ RDR+A+TI+LSQ ++I+    +F   +  P   P  +G+ +       N D  R ++      +R LVG++ +L + T P+++Y +  LSK   +P      A+  +LR+L  + D  +TLGG  +L AY+DAD+  +    +S  G+  
Sbjct:    2 LEKAIDARYGISSAGELSWLLGMRITRDRSAKTISLSQSAYIDSLVTRFGLDNATPAATPFVQGVALTRDQCPANDDEVREMANVP---YRELVGSLMYLRVATRPDISYHVSVLSKFLNNPGRAHWEAAKRVLRFLKGSRDWKLTLGGFSDLVAYSDADWAGDHDDRKSTGGYVF 174          
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Match: A0A401GP19_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GP19_9APHY)

HSP 1 Score: 92.8 bits (229), Expect = 9.610e-19
Identity = 55/173 (31.79%), Postives = 100/173 (57.80%), Query Frame = 1
Query:   16 KKAISLGYNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEACEKFQARSYEPVTNPVNKGIDVNINT--DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN-LTAYADADFCSERHKGRSRSGFAI 525
            K+ IS  + +SD+G++   LGI+VQRDR  RT++LSQH +I+    +F  +  + +T P++ G  ++I+    T R+    +   +R ++G++ + AL T P++AY+I  LS+   +P      A+  + RYL  T ++ +T G   + +  ++DAD+ S  H+  S SG+  
Sbjct:  327 KREISTRFKMSDLGEMHWILGIEVQRDRDVRTLSLSQHVYIDMILTRFNLQDAKSLTTPLDPGTVLSIHQCPSTPRQFEDMKNIPYREVIGSLMYAALGTRPDIAYAITALSQFMQNPGQPHWEAAKRVFRYLAGTRERWLTFGETTDGVEGFSDADWGSAEHR-HSISGYVF 498          
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.330e-18
Identity = 53/178 (29.78%), Postives = 96/178 (53.93%), Query Frame = 1
Query:    4 LSRIKKAISLGYNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEACEKFQARSYEPVTNPVNKGIDVNINT--DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN--LTAYADADFCSERHKGRSRSGFAI 525
            ++ +K  I   + + D+G +R  LGI+V  D   +T+ L Q  +I++  ++F      P   P++  + V      +T   ++    K FRS++G++++LA  T P++A ++  LS+   +P      A+  ++RYL  T + GV  GG ++  L AY+DAD+ S+R   RS SG  +
Sbjct:   84 INTVKDKIRHSFKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVL 261          
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Match: A0A6A3V7V5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V7V5_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.410e-18
Identity = 51/176 (28.98%), Postives = 95/176 (53.98%), Query Frame = 1
Query:    4 LSRIKKAISLGYNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEACEKFQARSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN--LTAYADADFCSERHKGRSRSGFAI 525
            ++ +K  I+  + + D+G+ R  LGI++  D   RT+ +SQ ++ E   +KF   + +P   P+  G+++    +     +  ++K +RSLVG++ +LA  T P+++ ++  LS+   +P      A   ++RYL  T+D G+   G L   L AY++AD+   R   RS SG  +
Sbjct:  122 IASVKARIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGRENAKPCLTPLEPGVNLTKADEPQTEEAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSNADWAGNRDDRRSVSGMLL 297          
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Match: A0A7S0MH90_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MH90_9CRYP)

HSP 1 Score: 92.0 bits (227), Expect = 1.470e-18
Identity = 54/176 (30.68%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   37 YNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEACEKFQARSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN---------------LTAYADADFCSERHKGRSRSGF 519
            + ++D+G+L   LG+++ R+R      LSQ  +I++A  KF  +    V  P+N G+  ++  +   + +  E + +RSL+G+ NW A+WT PE+++++H LS+  T+P+   L A+ HL RYL     KG    GP+                L  +AD+D+  +    RS SG+
Sbjct:  274 FEINDLGELSYFLGVQIIRNRDLGITQLSQAGYIDQALVKFGMQDSNIVHVPLNPGVKFSLADEP--KCTEEEHELYRSLIGSANWKAVWTSPEISFAVHYLSRFLTNPAKTHLKAAQHLFRYL-----KGTKTFGPVYRRDPTTAPFPQLANVLYGFADSDYAGDSDTHRSTSGY 442          
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Match: A0A4S4L493_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L493_9AGAM)

HSP 1 Score: 92.0 bits (227), Expect = 1.850e-18
Identity = 51/177 (28.81%), Postives = 93/177 (52.54%), Query Frame = 1
Query:    1 ELSRIKKAISLGYNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEACEKFQARSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLN--LTAYADADFCSERHKGRSRSGFAI 525
            +L   K  +   +N++D+ ++   L I+++RDR+ RTI LSQ  +IEE  E+F  ++  P+  P+     +     T   +   + + ++ ++G++ W  L T P++AY++  LS+  +SPS   L A   + +YL  T D  +   G  +  LT Y  AD+  + +  RS SG+  
Sbjct:  449 DLQEAKSLLKKAFNITDLXEINWLLXIRIERDRSERTIALSQERYIEEVLERFGQQNIXPICTPMXANQHL-----TRAEVPEVDIRGYQRILGSIMWAMLXTRPDLAYTVGALSQHSSSPSEEALHALMRVFKYLRGTSDMKLIYQGKKSKGLTGYVXADWAGDVNDRRSISGYVF 620          
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Match: A0A507DAM3_9FUNG (DNA-directed DNA polymerase n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DAM3_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 1.900e-18
Identity = 55/177 (31.07%), Postives = 95/177 (53.67%), Query Frame = 1
Query:    4 LSRIKKAISLGYNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEACEKFQARSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGG---PLNLTAYADADFCSERHKGRSRSGFAI 525
            ++ IK  +   +++ D+G+    LG+++QRDR ARTIT++Q  +I++  EKF    + P   PV     +        +    +   +RS+VG++ + +  T P++A  +    +    P+   L A   +LRYL  T+D G+ LGG   PL L+A+ DAD+ ++    RSRSG  +
Sbjct:  672 ITSIKHELMSLFSMKDLGEAEYFLGMEIQRDRVARTITITQRKYIQDMLEKFHFAEWNPSPLPVTMHEKI---ASRGPQEPPCDNNLYRSMVGSLLYASNMTRPDIATPVALAGQYVVDPAERHLVAVKKILRYLAGTKDHGLVLGGRTAPLELSAFVDADYNNDVDDRRSRSGVLV 845          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1046.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y1P1_HETAK5.860e-10996.57Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4DD78_HETAK1.580e-2635.06Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7R9V9Z0_9CHLO2.130e-2131.64Hypothetical protein n=2 Tax=Chlamydomonas euryale... [more]
A0A0C3AUA9_9AGAM8.850e-2031.25Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A401GP19_9APHY9.610e-1931.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3JMT1_9STRA1.330e-1829.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3V7V5_9STRA1.410e-1828.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7S0MH90_9CRYP1.470e-1830.68Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A4S4L493_9AGAM1.850e-1828.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A507DAM3_9FUNG1.900e-1831.07DNA-directed DNA polymerase n=1 Tax=Synchytrium en... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1046contigH-akashiwo_Contig1046:397576..398100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog946362.XP_004988392.1
PFAMsRVT_2,Retrotran_gag_2,rve
Model size525
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.84e-18
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta
DescriptionEncoded by
Cds size525
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.7826824-CDS-H-akashiwo_Contig1046:397575..3981001681387061.7826824-CDS-H-akashiwo_Contig1046:397575..398100Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1046 397576..398100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1046.7.1prot_H-akashiwo_Contig1046.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1046 397576..398100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1046.7.1

>prot_H-akashiwo_Contig1046.7.1 ID=prot_H-akashiwo_Contig1046.7.1|Name=mRNA_H-akashiwo_Contig1046.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=175bp
ELSRIKKAISLGYNVSDMGKLRVSLGIKVQRDRTARTITLSQHSFIEEAC
EKFQARSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLA
LWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPL
NLTAYADADFCSERHKGRSRSGFAI
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mRNA from alignment at H-akashiwo_Contig1046:397576..398100-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1046.7.1 ID=mRNA_H-akashiwo_Contig1046.7.1|Name=mRNA_H-akashiwo_Contig1046.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=525bp|location=Sequence derived from alignment at H-akashiwo_Contig1046:397576..398100- (Heterosigma akashiwo CCMP452)
GAGCTTTCCAGGATCAAGAAGGCAATTTCTCTTGGCTATAATGTGTCTGA CATGGGGAAATTGAGAGTATCTTTGGGCATCAAAGTCCAAAGGGACAGGA CTGCTAGAACTATCACTTTGTCACAACACAGCTTCATTGAGGAAGCCTGT GAAAAGTTTCAGGCACGCAGCTATGAGCCAGTAACAAATCCTGTCAACAA AGGCATTGATGTTAACATCAACACTGACACATCCAGAAGGCTTAGCACCT TTGAGGCCAAGAAATTCAGATCCTTGGTTGGTACTGTGAATTGGTTGGCT CTTTGGACATTTCCAGAAGTGGCCTACTCAATCCACACGCTGTCTAAAAG ATTTACTTCTCCATCTGCAAACTGCTTGGCAGCTTCATACCATCTTCTGA GATATCTCTGGTGGACTGAAGATAAGGGTGTGACTCTAGGTGGCCCTCTT AATCTAACTGCATATGCAGATGCTGATTTCTGCAGTGAAAGGCATAAAGG GAGAAGCAGATCTGGTTTTGCTATT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1046:397576..398100-

>mRNA_H-akashiwo_Contig1046.7.1 ID=mRNA_H-akashiwo_Contig1046.7.1|Name=mRNA_H-akashiwo_Contig1046.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=525bp|location=Sequence derived from alignment at H-akashiwo_Contig1046:397576..398100- (Heterosigma akashiwo CCMP452)
GAGCTTTCCAGGATCAAGAAGGCAATTTCTCTTGGCTATAATGTGTCTGA
CATGGGGAAATTGAGAGTATCTTTGGGCATCAAAGTCCAAAGGGACAGGA
CTGCTAGAACTATCACTTTGTCACAACACAGCTTCATTGAGGAAGCCTGT
GAAAAGTTTCAGGCACGCAGCTATGAGCCAGTAACAAATCCTGTCAACAA
AGGCATTGATGTTAACATCAACACTGACACATCCAGAAGGCTTAGCACCT
TTGAGGCCAAGAAATTCAGATCCTTGGTTGGTACTGTGAATTGGTTGGCT
CTTTGGACATTTCCAGAAGTGGCCTACTCAATCCACACGCTGTCTAAAAG
ATTTACTTCTCCATCTGCAAACTGCTTGGCAGCTTCATACCATCTTCTGA
GATATCTCTGGTGGACTGAAGATAAGGGTGTGACTCTAGGTGGCCCTCTT
AATCTAACTGCATATGCAGATGCTGATTTCTGCAGTGAAAGGCATAAAGG
GAGAAGCAGATCTGGTTTTGCTATT
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