mRNA_H-akashiwo_Contig1046.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1046.3.1
Unique NamemRNA_H-akashiwo_Contig1046.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Match: A0A7S1U7I4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7I4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.420e-37
Identity = 67/84 (79.76%), Postives = 78/84 (92.86%), Query Frame = 1
Query:    1 QEFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQVDLERLTQADIERSRRELADLEQKFLQRVAHSNR 252
            QEFK+GLLPLTDGTTLRTFLSKL+NCDPMRISKKFVG NCIGKQVFRRRQ D+++L+  +IERSRRELA+LE++FL+RVA S R
Sbjct:   75 QEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQADMDKLSPEEIERSRRELAELERRFLERVAQSTR 158          
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Match: A0A7S2V6K2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6K2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.750e-37
Identity = 63/82 (76.83%), Postives = 76/82 (92.68%), Query Frame = 1
Query:    1 QEFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQVDLERLTQADIERSRRELADLEQKFLQRVAHS 246
            QEFK+GLLPL DGTTLRTFLSKL+NC+PMRISKKFVG NCIGKQVFRRRQ D++RLT  +I+RSR+ELA+LE++FL+RVA +
Sbjct:   38 QEFKSGLLPLADGTTLRTFLSKLLNCEPMRISKKFVGSNCIGKQVFRRRQADMDRLTPVEIDRSRQELAELERRFLERVAQT 119          
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Match: A0A7S1D7J8_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7J8_CYCTE)

HSP 1 Score: 132 bits (332), Expect = 4.790e-37
Identity = 65/84 (77.38%), Postives = 75/84 (89.29%), Query Frame = 1
Query:    1 QEFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQVDLERLTQADIERSRRELADLEQKFLQRVAHSNR 252
            QEFKAGLLPLTDGTTLRTFLSKL+NCDPMRISKKFVG NCIGKQVFRRR  D+ RLT   I++SR EL++LE++FL+RVA +NR
Sbjct:   16 QEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRTADINRLTSEQIQQSRAELSELERRFLERVAQTNR 99          
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Match: A0A7S4J6Z5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J6Z5_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.410e-36
Identity = 64/83 (77.11%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    4 EFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQVDLERLTQADIERSRRELADLEQKFLQRVAHSNR 252
            EFKAGLLPLTDGTTLRTFLSKL+NCDPMRISKKFVG NCIGKQVFRRR  D+ RLT   I++SR+EL++LE++FL+RVA +NR
Sbjct:   58 EFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRTADINRLTPEQIQQSRQELSELERRFLERVAQTNR 140          
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Match: D8LN59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN59_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 5.460e-36
Identity = 69/84 (82.14%), Postives = 78/84 (92.86%), Query Frame = 1
Query:    1 QEFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQVDLERLTQADIERSRRELADLEQKFLQRVAHSNR 252
            QEFK+GLLPLTDGTTLRTFLSKL+NCDPMRISKKFVG NCIGKQVFRRRQ D++RL  ADIERSR +LADLE++FL+RVA +NR
Sbjct:  281 QEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRQADMDRLQPADIERSRSQLADLERRFLERVAMTNR 364          
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Match: A0A6H5KTB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB0_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 5.510e-36
Identity = 69/84 (82.14%), Postives = 78/84 (92.86%), Query Frame = 1
Query:    1 QEFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQVDLERLTQADIERSRRELADLEQKFLQRVAHSNR 252
            QEFK+GLLPLTDGTTLRTFLSKL+NCDPMRISKKFVG NCIGKQVFRRRQ D++RL  ADIERSR +LADLE++FL+RVA +NR
Sbjct:  370 QEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRQADMDRLQPADIERSRSQLADLERRFLERVAMTNR 453          
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Match: A0A6U0XNE9_9STRA (Hypothetical protein n=3 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0XNE9_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.120e-35
Identity = 67/84 (79.76%), Postives = 79/84 (94.05%), Query Frame = 1
Query:    1 QEFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQVDLERLTQADIERSRRELADLEQKFLQRVAHSNR 252
            QEFK+GLLPLTDGTTLRTFLSKL+NCDPMRISKKFVG NCIGKQVFRRRQ D++RLT  DI+RSR+EL+DLE++FL+RVA ++R
Sbjct:  196 QEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRQADMDRLTPEDIDRSRQELSDLERRFLERVAQTSR 279          
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Match: A0A7S2DAB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DAB7_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.230e-35
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 QEFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQVDLERLTQADIERSRRELADLEQKFLQRVAHSNR 252
            QEFK+GLLPLTDGTTLRTFLSKL+NCDPMRISKKFVG NCIGKQVFRRRQ D++RL+  +IERSR +L+DLE +FL+RVA SNR
Sbjct:   74 QEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGSNCIGKQVFRRRQADMDRLSSDEIERSRAQLSDLEHRFLERVAQSNR 157          
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Match: A0A7R9UAE4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAE4_9STRA)

HSP 1 Score: 136 bits (342), Expect = 3.410e-35
Identity = 67/84 (79.76%), Postives = 78/84 (92.86%), Query Frame = 1
Query:    1 QEFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQVDLERLTQADIERSRRELADLEQKFLQRVAHSNR 252
            QEFK+GLLPLTDGTTLRTFLSKL+NCDPMRISKKFVG NCIGKQVFRRRQ D+++L+  +IERSRRELA+LE++FL+RVA S R
Sbjct:  137 QEFKSGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGQNCIGKQVFRRRQADMDKLSPEEIERSRRELAELERRFLERVAQSTR 220          
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Match: A0A1Z5JSJ9_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSJ9_FISSO)

HSP 1 Score: 135 bits (340), Expect = 8.450e-35
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1
Query:    1 QEFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQVDLERLTQADIERSRRELADLEQKFLQRVAHSNR 252
            QEFKAGLLPLTDGTTLRTFLSKL+NCDPMRISKKFVGGNCIGKQVFRRR  DL RLT   I++SR EL++LE++FL+RVA +NR
Sbjct:   94 QEFKAGLLPLTDGTTLRTFLSKLLNCDPMRISKKFVGGNCIGKQVFRRRTADLNRLTPEQIQKSRAELSELERRFLERVAQTNR 177          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1046.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1U7I4_9STRA1.420e-3779.76Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2V6K2_9STRA2.750e-3776.83Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1D7J8_CYCTE4.790e-3777.38Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S4J6Z5_9STRA3.410e-3677.11Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
D8LN59_ECTSI5.460e-3682.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTB0_9PHAE5.510e-3682.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6U0XNE9_9STRA1.120e-3579.76Hypothetical protein n=3 Tax=Rhizochromulina marin... [more]
A0A7S2DAB7_9STRA1.230e-3579.76Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7R9UAE4_9STRA3.410e-3579.76Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1Z5JSJ9_FISSO8.450e-3579.76Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1046contigH-akashiwo_Contig1046:207234..207570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LN59
PFAMszf-C3HC4_2,zf-RING_2,zf-rbx1
Model size337
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.95e-37
EggNOG OGs28HE3@1|root,2QPS9@2759|Eukaryota
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.699646-CDS-H-akashiwo_Contig1046:207233..2075691681387061.699646-CDS-H-akashiwo_Contig1046:207233..207569Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1046 207234..207569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1046.3.1prot_H-akashiwo_Contig1046.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1046 207234..207569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1046.3.1

>prot_H-akashiwo_Contig1046.3.1 ID=prot_H-akashiwo_Contig1046.3.1|Name=mRNA_H-akashiwo_Contig1046.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=112bp
QEFKAGLLPLTDGTTLRTFLSKLMNCDPMRISKKFVGGNCIGKQVFRRRQ
VDLERLTQADIERSRRELADLEQKFLQRVAHSNRKPHPARPPHLAPSVQS
GGPPDPYGYGPP
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mRNA from alignment at H-akashiwo_Contig1046:207234..207570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1046.3.1 ID=mRNA_H-akashiwo_Contig1046.3.1|Name=mRNA_H-akashiwo_Contig1046.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=337bp|location=Sequence derived from alignment at H-akashiwo_Contig1046:207234..207570+ (Heterosigma akashiwo CCMP452)
CAGGAATTCAAGGCTGGGCTTCTGCCTCTAACGGATGGAACAACACTGCG CACATTCCTCAGCAAGTTGATGAACTGTGACCCAATGCGCATTTCAAAAA AGTTTGTTGGGGGAAATTGTATTGGAAAGCAAGTGTTTCGACGGCGCCAG GTGGACCTAGAGCGGTTAACCCAGGCAGATATTGAACGCTCGAGGCGGGA GTTGGCCGATCTGGAGCAAAAATTTCTTCAACGGGTGGCCCACTCCAACC GCAAACCCCATCCGGCCCGCCCTCCCCACCTGGCTCCTTCAGTCCAGTCA GGGGGGCCACCGGATCCTTACGGCTACGGGCCACCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1046:207234..207570+

>mRNA_H-akashiwo_Contig1046.3.1 ID=mRNA_H-akashiwo_Contig1046.3.1|Name=mRNA_H-akashiwo_Contig1046.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=336bp|location=Sequence derived from alignment at H-akashiwo_Contig1046:207234..207570+ (Heterosigma akashiwo CCMP452)
CAGGAATTCAAGGCTGGGCTTCTGCCTCTAACGGATGGAACAACACTGCG
CACATTCCTCAGCAAGTTGATGAACTGTGACCCAATGCGCATTTCAAAAA
AGTTTGTTGGGGGAAATTGTATTGGAAAGCAAGTGTTTCGACGGCGCCAG
GTGGACCTAGAGCGGTTAACCCAGGCAGATATTGAACGCTCGAGGCGGGA
GTTGGCCGATCTGGAGCAAAAATTTCTTCAACGGGTGGCCCACTCCAACC
GCAAACCCCATCCGGCCCGCCCTCCCCACCTGGCTCCTTCAGTCCAGTCA
GGGGGGCCACCGGATCCTTACGGCTACGGGCCACCA
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