mRNA_H-akashiwo_Contig1043.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1043.2.1
Unique NamemRNA_H-akashiwo_Contig1043.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1043.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1043contigH-akashiwo_Contig1043:38314..38882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size569
Hectar predicted targeting categoryother localisation
Exons1
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.463489-UTR-H-akashiwo_Contig1043:38313..383191681387061.463489-UTR-H-akashiwo_Contig1043:38313..38319Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1043 38314..38319 +
1681387061.4839332-UTR-H-akashiwo_Contig1043:38718..388821681387061.4839332-UTR-H-akashiwo_Contig1043:38718..38882Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1043 38719..38882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.4740243-CDS-H-akashiwo_Contig1043:38319..387181681387061.4740243-CDS-H-akashiwo_Contig1043:38319..38718Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1043 38320..38718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1043.2.1prot_H-akashiwo_Contig1043.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1043 38320..38718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1043.2.1

>prot_H-akashiwo_Contig1043.2.1 ID=prot_H-akashiwo_Contig1043.2.1|Name=mRNA_H-akashiwo_Contig1043.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=133bp
MICWYQTMTEAMYSCLTSREVNECENTCYRYNADALYGAYDCIWAFYHSW
AWDYGYCNYHSSLDADDSTVHCWTGDNIYTTDDTDFCDDYDAQDYNTNND
AAVTTAPPVFIVIAAVAVNALVSVFFPAGIGF*
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mRNA from alignment at H-akashiwo_Contig1043:38314..38882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1043.2.1 ID=mRNA_H-akashiwo_Contig1043.2.1|Name=mRNA_H-akashiwo_Contig1043.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=569bp|location=Sequence derived from alignment at H-akashiwo_Contig1043:38314..38882+ (Heterosigma akashiwo CCMP452)
ATTGACATGATTTGCTGGTACCAAACAATGACCGAAGCCATGTATAGCTG
CCTGACTTCGAGAGAAGTGAATGAATGCGAGAACACCTGCTATAGGTACA
ATGCCGATGCTCTTTATGGTGCTTATGACTGTATTTGGGCATTTTATCAT
TCTTGGGCCTGGGACTACGGCTATTGCAATTATCATTCCAGTCTAGATGC
CGATGACAGCACCGTTCATTGCTGGACAGGAGACAATATTTACACCACCG
ATGATACTGACTTCTGTGATGACTATGATGCGCAAGACTACAACACTAAC
AATGATGCTGCTGTCACAACTGCGCCACCAGTTTTTATTGTGATCGCAGC
GGTGGCAGTGAATGCACTGGTGTCAGTGTTTTTTCCTGCTGGCATTGGAT
TTTAGGTACTGCCCATTTGAAGCAGATAGCACCATATATATTAATATCTA
CCAGTTGAACGGGGCCTTCGTGCCCCGTCATGCCACACCAAGTGTCTCAC
CATAACCAATTCAGCTGCTGGTTAGTTATATTATTCTTAGTTGTAGTTGG
TATTATACACATATCGTCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1043:38314..38882+

>mRNA_H-akashiwo_Contig1043.2.1 ID=mRNA_H-akashiwo_Contig1043.2.1|Name=mRNA_H-akashiwo_Contig1043.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=399bp|location=Sequence derived from alignment at H-akashiwo_Contig1043:38314..38882+ (Heterosigma akashiwo CCMP452)
ATGATTTGCTGGTACCAAACAATGACCGAAGCCATGTATAGCTGCCTGAC
TTCGAGAGAAGTGAATGAATGCGAGAACACCTGCTATAGGTACAATGCCG
ATGCTCTTTATGGTGCTTATGACTGTATTTGGGCATTTTATCATTCTTGG
GCCTGGGACTACGGCTATTGCAATTATCATTCCAGTCTAGATGCCGATGA
CAGCACCGTTCATTGCTGGACAGGAGACAATATTTACACCACCGATGATA
CTGACTTCTGTGATGACTATGATGCGCAAGACTACAACACTAACAATGAT
GCTGCTGTCACAACTGCGCCACCAGTTTTTATTGTGATCGCAGCGGTGGC
AGTGAATGCACTGGTGTCAGTGTTTTTTCCTGCTGGCATTGGATTTTAG
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