mRNA_H-akashiwo_Contig1042.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1042.3.1
Unique NamemRNA_H-akashiwo_Contig1042.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 318 bits (814), Expect = 5.040e-96
Identity = 179/450 (39.78%), Postives = 264/450 (58.67%), Query Frame = 1
Query:    1 LAKKIE-DGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRVILSLAAEQGLSLSQLDVQTAFLNGTLTEELYMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRC*------------------------KVGDA--VTYVTIYVDDIAIASNDDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEY--KANEDDINRFRP------WWGLLA---------------GSQPGQTLCCCRQGLQISEGSGNKSIKLGGGTILCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTKALN 1200
            LAKK + DG L KYK RL A+GYSQ  G+DY  TF+PVVS+ SLR +L++AA + + +  +D++TAFL+G L E++YM+QPEG+  P     V KLKKSLYGLKQ+P+C                         KV      T +++YVDDI +AS+D   ++ +K  +   Y ++D G++E+ LG+K+ R+   +TI +SQ  FI++A  KF      P   P++  +D+++N +   + +  +  +FR       W  L                  S     L      L+    + +K + LGG   L AY DADFC++R  G+S +G+ +FLG SP++W+SR+Q  VT  TTEAEY++L     DVMWL+ LL  LG+KQ     + EDN ACI+WA + TV++  RH+HV+YHY +E+ Q KEIEVKY++T  Q+ D+FTK L+
Sbjct:  534 LAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGLKQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLD 982          
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 272 bits (696), Expect = 3.800e-85
Identity = 147/340 (43.24%), Postives = 203/340 (59.71%), Query Frame = 1
Query:  259 EFPDHVWKLKKSLYGLKQSPRC*KVGDAVTYVTIYVDDIAIASNDDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINRFRPWWGLLAG----SQPGQTLCCCR-QGLQIS----------------EGSGNKSIKLGGGTILCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTKALNEKSFE 1215
            E  DH+  L     G +      + G     V +YVDD+ I+ +    V+  K +L  KY +TD G+L   LG+K+ R+   K  H+SQ+ FIKDAL KFG D+ P  KTP+D T+DL+    +KA   D N +R   G LA     ++P       + Q  QI+                +G+ ++S++LGG  +L A+ D+DFC DRVDGKSVTGYI+FLGD+P+VW+S+LQ +VTT T EAEYLAL    KD+MWLR LL E+G  Q +PT V EDN+AC+ WA ++ V ++NRH HV+YH  +E      I + YI T +QV D+ TKALN  +FE
Sbjct:    2 ELHDHLESLGFKRSGHESCLYIHRDGGNELMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFE 341          
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Match: A0A401H607_9APHY (Transposon Ty5-1 protein n=4 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H607_9APHY)

HSP 1 Score: 265 bits (678), Expect = 6.230e-80
Identity = 164/451 (36.36%), Postives = 239/451 (52.99%), Query Frame = 1
Query:   16 EDGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRVILSLAAEQGLSLSQLDVQTAFLNGTLTEELYMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPR----------------------C*KV---GDAVTYVTIYVDDIAIASNDDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINRFRPWWGLLAG-----------------------SQPGQT-LCCCRQGLQISEGSGNKSIKLG--------GGTILCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTKAL 1197
            ++G + KYK RLVAKGYSQ PG+DY  TF PVV   ++R IL LAA     + Q+DV+ A+LNGTL EE+YM QPEG+ D  +   V KLKK+LYGLKQS R                      C  +   GD +  VT++VDD+ I +ND   +  LK  L+  + +TD G+    +G++I R+  K+TI +SQ+++I+  L K G  +      P+DP   L   KE    +D+ +R   +  L+                         + PG       ++ L+   G+    I  G          +I   Y DAD+  D  D KS++GY+  LG+  + W+S+ Q +V + TTEAEY+A  E AK+ +WLR L  E+GF+Q  PT + EDNTA IS A +     K++H  V +HYVRE  + K I++ Y  T + + D+ TK+L
Sbjct:   93 KEGEIIKYKARLVAKGYSQIPGMDYTETFVPVVRLETIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTY--RVCKLKKTLYGLKQSGREWNIVLNRKLLDARFKRLFSDPCAYIRIKGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKRTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLE--KEEPETDDECDRDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKRVLRYLSGTRELGIIYGPIADVKPEDQSIFVGYSDADYANDIRDRKSISGYLFKLGNGTITWSSKKQTTVASSTTEAEYMASAEAAKEAVWLRTLFKEIGFEQQDPTILFEDNTAAISIARDPQFHAKSKHFDVKHHYVREKLRDKYIDIHYCPTEDMIADILTKSL 539          
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Match: A0A2N9FIJ5_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FIJ5_FAGSY)

HSP 1 Score: 272 bits (696), Expect = 7.160e-79
Identity = 163/448 (36.38%), Postives = 248/448 (55.36%), Query Frame = 1
Query:   19 DGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRVILSLAAEQGLSLSQLDVQTAFLNGTLTEELYMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRC*-------------------------KVGDAVTYVTIYVDDIAIASNDDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDI----NRFRPWWGLLAGS-------------------QPGQT-LCCCRQGLQISEGSGNKSIKL-GGGTILCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTKALNEKSF 1212
            DG + +YK RLVAKG+ QQ G+D+  TF+PVV  P++R++LSLAA+    L QLD+  AFL+G L E++YM QP GF DP  PDHV KL+KSLYGLKQ+PR                           + G  V Y+ +YVDDI +  N    VA+L A L + + + D G L  FLGL+I+ N  +  + V Q ++I D L+KF   +C PA TP       S++++ + + DD+     ++R   G L  +                   +P  T L   ++ L+  +G+ +  I+   G + L A+ D+D+  D  D +S TG  VFLG++P+ W S+ Q +V+  +TEAEY AL   A ++ WLR +L +LG       T+  DNT+ I+ A+      + +H+ V+YH+VRE   + ++ + +I+T +Q+ DLFTK L  + F
Sbjct:  598 DGSISRYKARLVAKGFHQQAGLDFDETFSPVVKPPTVRIVLSLAAQHQWPLRQLDISNAFLHGFLKEDVYMIQPPGFVDPTHPDHVCKLQKSLYGLKQAPRAWFERFTSHLLTIGFVASTADPSLFVLRTGSTVLYLLLYVDDIILTGNSSSAVASLIAQLAETFELKDLGPLRFFLGLQIDYN--RTGLFVHQRKYISDLLLKFNMTNCKPASTP------FSISQKLQPSTDDVLPDPTQYRSLVGALQYATFTRPDITYAVNQVCQYMHKPNSTHLVAAKRILRYLQGTLHLGIRFQSGSSSLTAFTDSDWAGDPYDRRSTTGITVFLGNNPITWVSKKQHTVSRSSTEAEYRALATGAAELAWLRQVLCDLGVYLPTAPTMWCDNTSAIALASNPVFHSRTKHIEVDYHFVRERVVRGDLHLHFISTEDQLADLFTKPLTTQRF 1037          
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Match: A0A2N9F3A0_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F3A0_FAGSY)

HSP 1 Score: 271 bits (692), Expect = 2.220e-78
Identity = 156/423 (36.88%), Postives = 237/423 (56.03%), Query Frame = 1
Query:   19 DGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRVILSLAAEQGLSLSQLDVQTAFLNGTLTEELYMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRC*-------------------------KVGDAVTYVTIYVDDIAIASNDDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINRFRPWWGLLAGSQPGQTLCCCRQGLQISEGSGNKSIKLGGGTILCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTKALNEKSF 1212
            +G + +YK RLVAKG+ QQ G+D+  TF+PVV  P++R++LSLAA+   SL QLD+  AFL+G L E++YM QP GF DP   DHV KL+KSLYGLKQ+PR                           + G  V Y+ +YVDDI + SN    VA+L A L + + + D G L  FLGL+I+ N  +  + V Q ++I D L+KF   +C PA TP       S++++ + + DD+      +  L G+    T          +  +   ++   G + L A+ D+D+  D  D +S TG  VFLG++P+ W S+ Q  V+  +TEAEY AL   A ++ WLR +L +LG       T+  DNT+ I+ A+      + +H+ V+YH++RE   + ++ + +I+T +Q+ DLFTK L  + F
Sbjct:  616 NGSISRYKARLVAKGFHQQAGLDFDETFSPVVKPPTVRIVLSLAAQHQWSLRQLDISNAFLHGFLKEDVYMIQPPGFVDPTHSDHVCKLQKSLYGLKQAPRAWFERFTSHLLTIGFVASTADPSLFVLRTGSTVLYLLLYVDDIILTSNSSSAVASLIAQLAETFELKDLGPLRFFLGLQIDYN--RTGLFVHQRKYISDLLLKFNMTNCKPASTP------FSISQKLQPSTDDVLPDPTQYRSLVGALQYAT---------FTRPNITYAVNQSGSSSLTAFTDSDWAGDPYDHRSTTGITVFLGNNPITWVSKKQHIVSRSSTEAEYRALATGAAELAWLRQVLCDLGVYLPTAPTMWCDNTSAIALASNPVFHSRTKHIEVDYHFIRERVVRGDLHLHFISTEDQLADLFTKPLTTQRF 1021          
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM)

HSP 1 Score: 271 bits (694), Expect = 4.570e-78
Identity = 159/461 (34.49%), Postives = 249/461 (54.01%), Query Frame = 1
Query:    7 KKIEDGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRVILSLAAEQGLSLSQLDVQTAFLNGTLTEELYMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRC*-------------------------KVGDAVTYVTIYVDDIAIASNDDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNK-EYKANEDDINRFRPWWG-------LLAGSQPG--------------------QTLCCCRQGLQISEGSG---NKSIKLGGGTILCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELG-FKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTKALNEKSFEI 1218
            K+ + G ++++K RLVAKG+SQ+ GIDY  TFAPV    S+R++LSLAA+ GL L Q+DV+TAFLNG L E++YM QP+G+ D + PDHV KLK+SLYGLKQSPR                           + G  + +V +YVDD+ +AS+ D  + + K  L K++ +TD G+LE FLG++I  + G   + V Q++F+K  L KFG     P KTP DP + L+ N  E     +D  +  P+         L+  ++P                     Q L    + LQ +   G   ++   +G    +C Y DAD+  D    +S +GY   +    + W S+ Q++V   +TEAEY+AL E  ++V+WL+  L ELG     +   + EDN   I+ A      ++ +H+ + YH+VRE  +  ++ ++Y++T++ + D+ TKA+    F +
Sbjct:  709 KENQAGEVERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFSREDSVG----MCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEVVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAIPATQFSV 1165          
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Match: A0A2N9H3I2_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H3I2_FAGSY)

HSP 1 Score: 259 bits (662), Expect = 8.280e-78
Identity = 158/449 (35.19%), Postives = 241/449 (53.67%), Query Frame = 1
Query:    7 KKIEDGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRVILSLAAEQGLSLSQLDVQTAFLNGTLTEELYMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRC*-------------------------KVGDAVTYVTIYVDDIAIASNDDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLS-VNKEYKANEDDINRFRPWWG---LLAGSQPGQT-----------------LCCCRQGLQISEGSGNKSIKLGGGTI-LCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTKALNEKSF 1212
            K+  DG + +YK RL AKGY QQ G+DY  TF+PVV   ++R+ILS+AA+Q  SL QLDV  AFL+G L E +YM+QP GF DP++P HV +L+K+LYGLKQ+P                            + G  V Y+ +YVDDI +  N    + +L   L +++ I D G+L+ FLGL+I+       +H  Q ++  D L KF    C P  TP    + LS + K+      D   FR   G    L  ++P  +                 L   ++ L+  +G+ +  +    G + L A+ D+D+  D +D +S TG IVFLG +P+ W S+ Q +V   +TEAEY AL  CA D+ W+R +L +LG     P T+  DN + ++ AT      + +H+ V+YH++RE    +++++ +I+T +Q+ D+ TKAL    F
Sbjct:   78 KRNSDGSIARYKARLDAKGYHQQQGMDYDETFSPVVKPATVRLILSIAAQQNWSLKQLDVSNAFLHGLLKENVYMQQPPGFIDPQYPKHVCQLQKALYGLKQAPCAWFERFTSHLLTMGFTPSLANPSLFLYRQGSTVVYLLLYVDDIIVTGNQPTAIQSLITKLAQEFDIKDLGQLKFFLGLQIDYRSSGFFVH--QHKYATDLLAKFNMSTCKPCSTPF---VSLSRIRKDDGIPLPDPTPFRSMVGGLQYLTFTRPDLSYAVNHICQFMHQPTDHHLVAAKRILRYVQGTLHHGLTFRPGPLSLTAFTDSDWAGDPMDRRSTTGLIVFLGHNPITWQSKKQPTVARSSTEAEYRALANCAADLAWVRMVLKDLGIFLHAPPTIWCDNLSALALATNPVFHARTKHVEVDYHFIREKVTNRDLQLHHISTDDQLADILTKALPSPRF 521          
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Match: A0A401GA31_9APHY (Integrase catalytic domain-containing protein n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GA31_9APHY)

HSP 1 Score: 265 bits (678), Expect = 1.200e-77
Identity = 167/453 (36.87%), Postives = 241/453 (53.20%), Query Frame = 1
Query:   16 EDGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRVILSLAAEQGLSLSQLDVQTAFLNGTLTEELYMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPR----------------------C*KV---GDAVTYVTIYVDDIAIASNDDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINRFRPWWGLLAG-----------------------SQPGQ---TLCCCRQGLQISEGSGNKSIKLG--------GGTILCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTKAL 1197
            ++G + KYK RLVAKGYSQ PG+DY  TFAPVV   ++R IL LAA     + Q+DV+ A+LNGTL EE+YM QPEG+ D  +   V KLKK+LYGLKQS R                      C  +   GD +  VT++VDD+ I +ND   +  LK  L+  + +TD G+    +G++I R+  K+TI +SQ+++I+  L K G  +      P+DP   L   KE    +D+ +R   +  L+                         + PG    T   C   L+   G+    I  G          +I   Y DAD+  D  D KS++GY+  LG+  ++W+S+ Q +V + TTEAEY+A  E AK+ +WLR L  E+GF+Q  PT + EDNTA IS A +     K++H  V +HYVRE  + K I++ Y  T + + D+ TK+L
Sbjct:  349 KEGEIIKYKARLVAKGYSQIPGMDYTETFAPVVRLETIRAILGLAAILDWEIGQMDVKGAYLNGTLKEEVYMRQPEGYSDGTY--RVCKLKKTLYGLKQSGREWNIVLNRKLLDAGFKRLFSDPCAYIRIKGDKIEIVTVWVDDLLIFTNDCALMDQLKRELRNMFEVTDLGEPRKIVGIEIERDRSKQTIKISQTKYIESILHKNGLTNANTVGMPLDPNTVLE--KEEPKTDDECDRDNGYASLVGSLMYAAIATRPDIAHAVQRLSSFTANPGMAHWTAAKCV--LRYLSGTRELGIIYGPIADVKPEDQSIFVGYSDADYANDIRDRKSISGYLFKLGNGTIMWSSKKQTTVASSTTEAEYMASAEAAKEAVWLRTLFKEIGFEQQDPTILFEDNTAAISIARDPQFHAKSKHFDVKHHYVREKLRDKYIDIHYCPTEDMIADILTKSL 795          
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Match: A0A2N9IXX5_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IXX5_FAGSY)

HSP 1 Score: 266 bits (681), Expect = 1.310e-77
Identity = 157/451 (34.81%), Postives = 243/451 (53.88%), Query Frame = 1
Query:    7 KKIEDGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRVILSLAAEQGLSLSQLDVQTAFLNGTLTEELYMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRC*-------------------------KVGDAVTYVTIYVDDIAIASNDDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINRFRPWWGLLAGSQ-----------------------PGQTLCCCRQGLQISEGSGNKSIKLGGGTI-LCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTKALNEKSF 1212
            K+  DG + +YK RLVAKGY QQ G+DY  TF+PVV   ++R+ILS+AA+Q  SL QLDV  AFL+G L E +YM+QP GF DP++P HV +L+K+LYGLKQ+PR                           + G  V Y+ +YVDDI +  N    V +L   L +++ I D G+L+ FLGL+I+       +H  Q ++  D L KF    C P  TP      +S+++  K +   ++   P+  ++ G Q                           L   ++ L+  +G+ +  +    G + L A+ D+D+  D +D +S TG IVFLG +P+ W S+ Q +V   +TEAEY AL  CA D+ W+R +L +LG     P T+  DN + ++ AT      + +H+ V+YH++RE    +++++ +I+T +Q+ D+ TKAL    F
Sbjct:  427 KRNSDGSIARYKARLVAKGYHQQQGMDYDETFSPVVKPATVRLILSIAAQQNWSLKQLDVSNAFLHGLLKENVYMQQPPGFIDPQYPKHVCQLQKALYGLKQAPRAWFERFTSHLLTMGFTPSLADPSLFLYRQGSTVVYLLLYVDDIIVTGNQPTVVQSLITKLAQEFDIKDLGQLKFFLGLQIDYRSSGFFVH--QQKYATDLLAKFNMSTCKPCSTPF-----VSLSRIRKDDGIPLSDPTPFRSMVGGLQYLTFTRPDLSYAVNHICQFMHQPTDHHLVAAKRILRYVQGTLHHGLTFRPGPLSLTAFTDSDWAGDPMDRRSTTGLIVFLGHNPITWQSKKQPTVARSSTEAEYRALANCAADLAWVRMVLKDLGIFLHAPPTIWCDNLSALALATNPVFHARTKHVEVDYHFIREKVTNRDLQLHHISTDDQLADILTKALPSPRF 870          
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Match: A0A2N9HB73_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HB73_FAGSY)

HSP 1 Score: 258 bits (658), Expect = 3.970e-76
Identity = 163/452 (36.06%), Postives = 241/452 (53.32%), Query Frame = 1
Query:    7 KKIEDGVLKKYKGRLVAKGYSQQPGIDYAATFAPVVSAPSLRVILSLAAEQGLSLSQLDVQTAFLNGTLTEELYMEQPEGFRDPEFPDHVWKLKKSLYGLKQSPRC*-------------------------KVGDAVTYVTIYVDDIAIASNDDRTVAALKATLKKKYRITDAGKLENFLGLKINRNLGKKTIHVSQSQFIKDALIKFGYDHCPPAKTPMDPTMDLSVNKEYKANEDDINRFRPWWGLLAGSQ------PGQT-----LCCCRQG------------LQISEGSGNKSIKLGGGTI-LCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSRLQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTACISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTKALNEKSFE 1215
            K+  DG + +YK RLVAKG+ QQ G+DYA TF+PVV  P++R+ILSLAA+   +L QLDV  AFL+G L E +YM QP GF D +   HV  L KSLYGLKQ+PR                           K G  + Y+ +YVDDI I  +D   V+ + + L   + + D G L  FLGL+I+    K    V QS++I D L+KF    C  A TP+  +  LS +       D +    P+  L+   Q      P  T     +C C               L+  +GS +K +    G + L A+ DAD+  D VD +S +G  VFLG++P+ W S+ Q +V+  +TEAEY +L   A ++ WLR ++ +LG        +  DNT+ ++ A+ +    + +H+ V+YH+VRE   + +I +++I+T +QV D+FTKAL    F+
Sbjct:  187 KRATDGSVSRYKARLVAKGFHQQVGVDYAETFSPVVKPPTVRIILSLAAQNRWNLCQLDVSNAFLHGFLKETVYMAQPTGFIDVDQSSHVCHLHKSLYGLKQAPRAWFERFTSHLLTLGFTASVADASLFVLKQGSVIVYLLLYVDDIIITGSDSTVVSTIISQLSTTFEVKDLGPLRYFLGLQIDYK--KAGFFVHQSKYITDLLMKFKMSDCKAASTPIATSPVLSTSCS-----DSLADPTPYRSLVGALQYATFTRPNITFAVNRVCQCMHNSSSAHLVVAKRILRYLKGSLDKGVLFQPGPLTLTAFTDADWAGDPVDRRSTSGITVFLGNNPITWLSKKQHTVSRSSTEAEYRSLATGAAELAWLRQVICDLGLYLSSAPIMWCDNTSALALASSLVFHGRTKHIEVDYHFVRERVVRGDICLQFISTDDQVADIFTKALPTPRFQ 631          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1042.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y1P1_HETAK5.040e-9639.78Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4DD78_HETAK3.800e-8543.24Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A401H607_9APHY6.230e-8036.36Transposon Ty5-1 protein n=4 Tax=Sparassis crispa ... [more]
A0A2N9FIJ5_FAGSY7.160e-7936.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9F3A0_FAGSY2.220e-7836.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H4L3_PHYRM4.570e-7834.49Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
A0A2N9H3I2_FAGSY8.280e-7835.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GA31_9APHY1.200e-7736.87Integrase catalytic domain-containing protein n=2 ... [more]
A0A2N9IXX5_FAGSY1.310e-7734.81CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A0A2N9HB73_FAGSY3.970e-7636.06Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1042contigH-akashiwo_Contig1042:58352..59707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size1218
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.17e-30
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size627
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.4083374-CDS-H-akashiwo_Contig1042:58351..588721681387061.4083374-CDS-H-akashiwo_Contig1042:58351..58872Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1042 58352..58872 -
1681387061.4179113-CDS-H-akashiwo_Contig1042:58935..590411681387061.4179113-CDS-H-akashiwo_Contig1042:58935..59041Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1042 58936..59041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387061.4266944-UTR-H-akashiwo_Contig1042:59041..593061681387061.4266944-UTR-H-akashiwo_Contig1042:59041..59306Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1042 59042..59306 -
1681387061.4355028-UTR-H-akashiwo_Contig1042:59381..597071681387061.4355028-UTR-H-akashiwo_Contig1042:59381..59707Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1042 59382..59707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1042.3.1prot_H-akashiwo_Contig1042.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1042 58352..59041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1042.3.1

>prot_H-akashiwo_Contig1042.3.1 ID=prot_H-akashiwo_Contig1042.3.1|Name=mRNA_H-akashiwo_Contig1042.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=209bp
MDPTMDLSVNKEYKANEDDINRFRPWWGLLAGSQPGQTLCCCRQGLQISE
GSGNKSIKLGGGTILCAYCDADFCTDRVDGKSVTGYIVFLGDSPVVWTSR
LQKSVTTCTTEAEYLALGECAKDVMWLRYLLAELGFKQIKPTTVNEDNTA
CISWATEITVTRKNRHLHVNYHYVRELFQQKEIEVKYINTSEQVGDLFTK
ALNEKSFEI
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mRNA from alignment at H-akashiwo_Contig1042:58352..59707-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1042.3.1 ID=mRNA_H-akashiwo_Contig1042.3.1|Name=mRNA_H-akashiwo_Contig1042.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1356bp|location=Sequence derived from alignment at H-akashiwo_Contig1042:58352..59707- (Heterosigma akashiwo CCMP452)
TTGGCAAAAAAAATCGAAGACGGGGTTCTAAAGAAATACAAAGGGAGATT AGTAGCTAAAGGGTACTCCCAACAACCCGGCATTGACTATGCTGCAACCT TTGCTCCCGTCGTCAGCGCTCCCTCACTGCGAGTTATCTTGTCTTTGGCT GCGGAACAGGGTCTTTCGCTATCTCAGTTGGATGTTCAGACTGCGTTTCT AAATGGAACGCTCACTGAGGAACTATATATGGAGCAGCCCGAAGGCTTTC GTGATCCTGAGTTTCCTGATCATGTTTGGAAGCTCAAAAAGTCTCTGTAC GGTTTGAAACAAAGCCCACGTTGCTGGTATGCTAACCTGCATTCAACCTT GAGGGAGTACGGTTTCACACGCAGTGAATATGACGGATGTATCTACATGA GAAAGGTTGGTGATGCTGTAACCTACGTCACCATTTATGTGGATGATATT GCCATCGCATCCAACGATGACAGAACGGTGGCTGCACTCAAAGCGACGCT TAAGAAGAAGTACAGAATCACTGATGCGGGTAAACTGGAGAACTTTCTAG GCCTAAAAATAAACAGAAACTTGGGCAAAAAGACAATTCACGTATCTCAG TCACAGTTCATCAAAGATGCGCTGATCAAGTTTGGGTATGATCATTGTCC TCCTGCAAAGACTCCAATGGATCCTACAATGGATCTTAGTGTCAACAAGG AATACAAAGCTAATGAGGATGATATTAACAGGTTTCGCCCATGGTGGGGA CTCTTAGCTGGATCGCAACCTGGTCTATACCTGAAATCTCTTTCGCAGTA CACAAGCTACAGCGCGTGCGACTAACTATCCAGAGGCCAAACACTTTGCT GCTGCAGGCAGGGTCTTCAAATATCTGAAGGATCTGGTAATAAGTCCATC AAACTTGGTGGGGGCACGATTCTTTGTGCTTATTGCGATGCAGACTTCTG CACCGATAGAGTTGATGGAAAATCGGTCACCGGTTATATTGTCTTCCTAG GGGACTCTCCTGTAGTTTGGACATCTAGACTACAAAAATCAGTGACTACG TGCACTACTGAGGCAGAATACCTAGCTCTTGGAGAATGTGCAAAAGATGT GATGTGGTTGCGATACTTGTTGGCAGAATTAGGCTTCAAACAAATCAAAC CTACAACAGTGAATGAGGATAACACAGCTTGCATCTCTTGGGCTACTGAA ATCACTGTTACTAGGAAGAATCGCCATCTTCATGTGAACTATCACTATGT CAGGGAGCTATTTCAACAAAAGGAGATTGAAGTGAAGTACATCAATACTT CAGAACAAGTTGGAGATCTGTTCACCAAGGCTCTCAATGAGAAATCATTT GAGATT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1042:58352..59707-

>mRNA_H-akashiwo_Contig1042.3.1 ID=mRNA_H-akashiwo_Contig1042.3.1|Name=mRNA_H-akashiwo_Contig1042.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=627bp|location=Sequence derived from alignment at H-akashiwo_Contig1042:58352..59707- (Heterosigma akashiwo CCMP452)
ATGGATCCTACAATGGATCTTAGTGTCAACAAGGAATACAAAGCTAATGA
GGATGATATTAACAGGTTTCGCCCATGGTGGGGACTCTTAGCTGGATCGC
AACCTGGCCAAACACTTTGCTGCTGCAGGCAGGGTCTTCAAATATCTGAA
GGATCTGGTAATAAGTCCATCAAACTTGGTGGGGGCACGATTCTTTGTGC
TTATTGCGATGCAGACTTCTGCACCGATAGAGTTGATGGAAAATCGGTCA
CCGGTTATATTGTCTTCCTAGGGGACTCTCCTGTAGTTTGGACATCTAGA
CTACAAAAATCAGTGACTACGTGCACTACTGAGGCAGAATACCTAGCTCT
TGGAGAATGTGCAAAAGATGTGATGTGGTTGCGATACTTGTTGGCAGAAT
TAGGCTTCAAACAAATCAAACCTACAACAGTGAATGAGGATAACACAGCT
TGCATCTCTTGGGCTACTGAAATCACTGTTACTAGGAAGAATCGCCATCT
TCATGTGAACTATCACTATGTCAGGGAGCTATTTCAACAAAAGGAGATTG
AAGTGAAGTACATCAATACTTCAGAACAAGTTGGAGATCTGTTCACCAAG
GCTCTCAATGAGAAATCATTTGAGATT
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