mRNA_H-akashiwo_Contig104.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig104.8.1
Unique NamemRNA_H-akashiwo_Contig104.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Match: A0A835Z4I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.330e-13
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    5 DADTNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLVKVGKKEQAIIDE 160
            DA+TNKLK FGFAT+ T E A+ A +VLNG KV G+ +LVKVGKKEQA IDE
Sbjct:   72 DAETNKLKHFGFATYRTAEEADVAVKVLNGQKVMGEELLVKVGKKEQAAIDE 123          
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Match: F0XVP3_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVP3_AURAN)

HSP 1 Score: 66.6 bits (161), Expect = 2.250e-11
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 2
Query:    2 MDADTNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLVKVGKKEQAIIDEMKA 169
            MD++T++ K FGF TF   E A +A ++LN F +EGQ +LVKVG+KEQ IIDEM A
Sbjct:   39 MDSETDRPKAFGFCTFGNAEGAMQAVKLLNDFPLEGQKILVKVGRKEQVIIDEMVA 94          
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Match: A0A7S3JUW1_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUW1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.410e-10
Identity = 30/57 (52.63%), Postives = 39/57 (68.42%), Query Frame = 2
Query:    2 MDADTNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLVKVGKKEQAIIDEMKAQ 172
            +DA+T K K FGF TF+    A +A   LN F + GQ +LVKVGKKEQA+ID ++ Q
Sbjct:   89 LDAETEKPKAFGFCTFANANGAMRAVRSLNSFSLLGQKILVKVGKKEQALIDSLQRQ 145          
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Match: A0A2M7LKG0_9BACT (RNA-binding protein n=2 Tax=Candidatus Roizmanbacteria TaxID=1752723 RepID=A0A2M7LKG0_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 2.190e-6
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 2
Query:    5 DADTNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLVKVGK 136
            D +T + KGFGF TF++PEAA KA E LNG ++EG+ ++V V K
Sbjct:   38 DRETGRSKGFGFVTFASPEAAQKALE-LNGKEIEGRTIVVNVAK 80          
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 1.580e-5
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 2
Query:    2 MDADTNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLVKVGKKEQAIID 157
            +D  T+  K FGF T+   +AA  + ++LN  ++ GQP+LVKVGKKEQ  ++
Sbjct:  169 VDPSTDLPKAFGFCTYHNAQAAAISVQLLNDLELAGQPILVKVGKKEQPSLE 220          
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Match: K5X839_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5X839_PHACS)

HSP 1 Score: 49.3 bits (116), Expect = 2.940e-5
Identity = 26/57 (45.61%), Postives = 41/57 (71.93%), Query Frame = 2
Query:    2 MDADTNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLV-KVGKKEQAIIDEMKA 169
            MD +T K +GFGF TF++PEA +KA E LNG +++G+P+ + K  +K+Q  + E +A
Sbjct:  342 MDRNTGKSRGFGFVTFASPEAVDKALE-LNGKEIDGRPINIDKSVEKDQNQVRERRA 397          
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Match: A0A699Z2Q7_HAELA (RRM domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z2Q7_HAELA)

HSP 1 Score: 48.9 bits (115), Expect = 4.040e-5
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 2
Query:    5 DADTNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLVKVGKKEQAIIDEMKA 169
            D +T  LKGFGF  F   E   +A  +LNGFKV+GQ +++K     Q  +++ +A
Sbjct:  173 DPETKVLKGFGFCEFQEAEGVLRAIRLLNGFKVDGQELVIKGNSATQRYVEQYEA 227          
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Match: A0A101HLS7_9BACT (RRM domain-containing RNA-binding protein n=1 Tax=Microgenomates bacterium 39_7 TaxID=1641390 RepID=A0A101HLS7_9BACT)

HSP 1 Score: 47.0 bits (110), Expect = 4.280e-5
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 2
Query:   11 DTNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLVKVGKKEQ 145
            +T++ KGFGFA FS+PEAA  A E L+G +++G+ ++V + +  Q
Sbjct:   46 NTDRSKGFGFAEFSSPEAAQAAIEALHGTEMDGRELVVNIARPRQ 90          
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Match: UPI000C6DAB62 (RNA-binding protein 41-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DAB62)

HSP 1 Score: 48.5 bits (114), Expect = 5.420e-5
Identity = 19/42 (45.24%), Postives = 30/42 (71.43%), Query Frame = 2
Query:   14 TNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLVKVGKK 139
            T ++KG  F TF+ P  A  A E++NG+K+ GQP++++ GKK
Sbjct:  313 TGRMKGQAFVTFADPPLAQSALELINGYKLRGQPIIIEYGKK 354          
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Match: A0A1S8W4I1_9FUNG (RRM domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W4I1_9FUNG)

HSP 1 Score: 46.2 bits (108), Expect = 8.680e-5
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 2
Query:    5 DADTNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLVKVGKKEQ 145
            D +T + +GFGF TFSTPEAA  A + LNG +V G+ + V +  +++
Sbjct:   44 DRETGRSRGFGFVTFSTPEAAELAVQQLNGQEVNGRNVRVNLANEQR 90          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig104.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835Z4I4_9STRA7.330e-1369.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0XVP3_AURAN2.250e-1157.14Expressed protein (Fragment) n=1 Tax=Aureococcus a... [more]
A0A7S3JUW1_9STRA9.410e-1052.63Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A2M7LKG0_9BACT2.190e-654.55RNA-binding protein n=2 Tax=Candidatus Roizmanbact... [more]
D7FJT5_ECTSI1.580e-544.23Splicing factor PWI domain-containing protein / RN... [more]
K5X839_PHACS2.940e-545.61Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]
A0A699Z2Q7_HAELA4.040e-540.00RRM domain-containing protein n=1 Tax=Haematococcu... [more]
A0A101HLS7_9BACT4.280e-544.44RRM domain-containing RNA-binding protein n=1 Tax=... [more]
UPI000C6DAB625.420e-545.24RNA-binding protein 41-like n=1 Tax=Centruroides s... [more]
A0A1S8W4I1_9FUNG8.680e-544.68RRM domain-containing protein n=1 Tax=Batrachochyt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig104contigH-akashiwo_Contig104:354102..354609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009032297.1
Preferred nameSNU71
PFAMsPWI,RRM_1
Model size182
Max annot lvl2759|Eukaryota
KEGG koko:K12822
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0010941,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1990904
Exons2
Evalue3.69e-12
EggNOG OGsKOG2253@1|root,KOG2253@2759|Eukaryota
DescriptionmRNA processing
Cds size180
COG categoryS
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.8408608-CDS-H-akashiwo_Contig104:354101..3542091681387059.8408608-CDS-H-akashiwo_Contig104:354101..354209Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 354102..354209 -
1681387059.8522806-CDS-H-akashiwo_Contig104:354536..3546081681387059.8522806-CDS-H-akashiwo_Contig104:354536..354608Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 354537..354608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.8618698-UTR-H-akashiwo_Contig104:354608..3546091681387059.8618698-UTR-H-akashiwo_Contig104:354608..354609Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig104 354609..354609 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig104.8.1prot_H-akashiwo_Contig104.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig104 354102..354608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig104.8.1

>prot_H-akashiwo_Contig104.8.1 ID=prot_H-akashiwo_Contig104.8.1|Name=mRNA_H-akashiwo_Contig104.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
MDADTNKLKGFGFATFSTPEAANKACEVLNGFKVEGQPMLVKVGKKEQAI
IDEMKAQWKK
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mRNA from alignment at H-akashiwo_Contig104:354102..354609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig104.8.1 ID=mRNA_H-akashiwo_Contig104.8.1|Name=mRNA_H-akashiwo_Contig104.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=508bp|location=Sequence derived from alignment at H-akashiwo_Contig104:354102..354609- (Heterosigma akashiwo CCMP452)
GATGGATGCTGATACAAACAAGCTGAAGGGCTTTGGGTTTGCAACTTTCA GCACCCCTGAAGCGGCCAATAAGGTATACACGAGACTCCGTTTGTTTTTT ATTTTATATATGTATGTATGTGAAGAGAGGAAGGAAGACAGATCTGGATT TTTTTAATTAGCCATTTTGACAACAGCAAGAAGCCCCCCCCAAACTTTAT CAACTTCACTTGTGGTGGGTGTCACGCTTCGCACAATGGCTGTTTCCCAC CTACTCTCGCCTGCTGACTGACTCCCCTCCCAGCCCAGTCAGCGAGTTCT GTCCCGCCCTCCCCTTCCACCGACTGCCGCCCCACCCAGGCCTGCCGCCT CGCCTCTCCCAGCCAGTTGCCCCCCCTTCACCGCCTGCCCCGCCGCACAG GCCTGCGAAGTGCTGAACGGCTTCAAGGTGGAGGGCCAGCCGATGCTCGT CAAGGTCGGCAAGAAGGAGCAGGCCATCATCGACGAGATGAAGGCGCAGT GGAAGAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig104:354102..354609-

>mRNA_H-akashiwo_Contig104.8.1 ID=mRNA_H-akashiwo_Contig104.8.1|Name=mRNA_H-akashiwo_Contig104.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig104:354102..354609- (Heterosigma akashiwo CCMP452)
ATGGATGCTGATACAAACAAGCTGAAGGGCTTTGGGTTTGCAACTTTCAG
CACCCCTGAAGCGGCCAATAAGGCCTGCGAAGTGCTGAACGGCTTCAAGG
TGGAGGGCCAGCCGATGCTCGTCAAGGTCGGCAAGAAGGAGCAGGCCATC
ATCGACGAGATGAAGGCGCAGTGGAAGAAG
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