mRNA_H-akashiwo_Contig104.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig104.6.1
Unique NamemRNA_H-akashiwo_Contig104.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Match: A0A7S3UVP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVP2_HETAK)

HSP 1 Score: 183 bits (465), Expect = 2.430e-56
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
Query:    1 KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLKLSSSS 282
            KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLKLSSSS
Sbjct:  102 KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLKLSSSS 195          
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Match: A0A7S2CNP4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNP4_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.330e-33
Identity = 56/91 (61.54%), Postives = 76/91 (83.52%), Query Frame = 1
Query:    1 KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLKLS 273
            KA LF++P+ W V+D H I+ + ++ WIVKKIVE+LGEEE+TLIDFI +KL  H++P +IL+ELKLVLDDDAE F++K+WRML FH +KL+
Sbjct:   50 KATLFSFPIHWDVLDAHRIVATNMRPWIVKKIVEYLGEEEKTLIDFIITKLDQHSNPHAILDELKLVLDDDAETFVLKMWRMLAFHGIKLA 140          
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Match: A0A7S2XWQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWQ2_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.900e-32
Identity = 59/94 (62.77%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLKLSSSS 282
            K ALFAY V W +V +HD++ SKL+ W+ KKI E+LGEEE TLIDFI S+L+  A P+SIL+EL LVLD+DAEIF VKLWRMLIFH L+++  +
Sbjct:  150 KRALFAYKVNWDLVHKHDVVGSKLRPWVSKKITEYLGEEERTLIDFIVSQLMERAHPQSILDELALVLDEDAEIFTVKLWRMLIFHELRIAQGA 243          
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Match: A0A835Z4I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.940e-27
Identity = 51/93 (54.84%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    1 KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLKLSSS 279
            K ALFAYP+ W VV  H I+ +K++ W+V+KI E+LGEEE TLIDF+C+KL + A P+++L+EL+LVL++DAE+F VK+WRML+F  L+ +++
Sbjct:  670 KDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVFCALRAAAA 762          
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Match: A0A6B2L9W9_9EUKA (PWI domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L9W9_9EUKA)

HSP 1 Score: 111 bits (277), Expect = 9.520e-27
Identity = 48/90 (53.33%), Postives = 71/90 (78.89%), Query Frame = 1
Query:    1 KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLKL 270
            K ALFAY + WA+V+E  I++ K++ W+ KKIVE L EEE TLI++IC KL  H+ P+ IL++L++VLDD+A  F++K+WRMLIF++L +
Sbjct:  229 KEALFAYVIDWAIVEEKQIVEQKMRPWVTKKIVELLDEEEPTLIEYICKKLCDHSSPQDILDQLQVVLDDEASAFVIKMWRMLIFNMLNV 318          
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Match: A0A4U5LNI4_STECR (PWI domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LNI4_STECR)

HSP 1 Score: 103 bits (256), Expect = 1.300e-25
Identity = 43/85 (50.59%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    1 KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIF 255
            K  LFAYP+ W  VDE D++KS+++ W+ KKIVE++GEEE +L+DF+C K+++ + P  +L+++ +VLD++AEIF+VK+WR+LI+
Sbjct:   24 KDDLFAYPIEWEFVDE-DLVKSRVRPWVTKKIVEYIGEEEASLVDFVCDKVMAKSPPTKLLKDIAMVLDEEAEIFVVKMWRLLIY 107          
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Match: K8YX66_NANGC (RNA-binding protein 25 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YX66_NANGC)

HSP 1 Score: 110 bits (276), Expect = 1.540e-25
Identity = 47/89 (52.81%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLK 267
            + AL  YPV W  VD++ ++ SKL+AW+  K++E LGEEE TLI+FICSKL SH  P  +L EL+LV DD+A++F+ KLWR+LI++ ++
Sbjct:  479 RKALLMYPVDWVAVDKNSLVSSKLRAWVASKVIELLGEEENTLIEFICSKLTSHCHPNKLLAELRLVFDDEADVFIEKLWRILIYYTIE 567          
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.980e-25
Identity = 49/86 (56.98%), Postives = 72/86 (83.72%), Query Frame = 1
Query:   10 LFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLK 267
            LFAY + W +V++H+II+SK++ WIVKKI+E+LGEEE+TL +F+ +KL   A P++IL+ELKLVL++DA +FM K+WRML+F  L+
Sbjct:  710 LFAYEINWQMVEQHNIIQSKMRPWIVKKIIEYLGEEEKTLTEFVLTKLGQRAKPQTILDELKLVLEEDAAVFMTKMWRMLVFCTLR 795          
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Match: A0A803TZN6_ANOCA (PWI domain-containing protein n=13 Tax=Sauria TaxID=32561 RepID=A0A803TZN6_ANOCA)

HSP 1 Score: 105 bits (262), Expect = 1.420e-24
Identity = 43/85 (50.59%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIF 255
            K  LFAYP+ W++VD   +++ +++ WI KKI+E++GEEE TL+DF+CSK+++H+ P+SIL+++ +VLD++AE+F+VK+WR+LI+
Sbjct:  221 KPELFAYPLDWSIVDST-LMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIY 304          
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Match: A0A7N4PU74_SARHA (PWI domain-containing protein n=2 Tax=Sarcophilus harrisii TaxID=9305 RepID=A0A7N4PU74_SARHA)

HSP 1 Score: 105 bits (262), Expect = 1.420e-24
Identity = 43/85 (50.59%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIF 255
            K  LFAYP+ W++VD   +++ +++ WI KKI+E++GEEE TL+DF+CSK+++H+ P+SIL+++ +VLD++AE+F+VK+WR+LI+
Sbjct:  221 KPELFAYPLDWSIVDST-LMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIY 304          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig104.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UVP2_HETAK2.430e-56100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CNP4_9STRA6.330e-3361.54Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XWQ2_9STRA6.900e-3262.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z4I4_9STRA1.940e-2754.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6B2L9W9_9EUKA9.520e-2753.33PWI domain-containing protein n=1 Tax=Arcella inte... [more]
A0A4U5LNI4_STECR1.300e-2550.59PWI domain-containing protein n=1 Tax=Steinernema ... [more]
K8YX66_NANGC1.540e-2552.81RNA-binding protein 25 n=2 Tax=Nannochloropsis gad... [more]
D7FJT5_ECTSI1.980e-2556.98Splicing factor PWI domain-containing protein / RN... [more]
A0A803TZN6_ANOCA1.420e-2450.59PWI domain-containing protein n=13 Tax=Sauria TaxI... [more]
A0A7N4PU74_SARHA1.420e-2450.59PWI domain-containing protein n=2 Tax=Sarcophilus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig104contigH-akashiwo_Contig104:341372..342688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FJT5
Preferred nameSNU71
PFAMsPWI,RRM_1
Model size447
Max annot lvl2759|Eukaryota
KEGG koko:K12822
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0010941,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1990904
Exons3
Evalue3.19e-27
EggNOG OGsKOG2253@1|root,KOG2253@2759|Eukaryota
DescriptionmRNA processing
Cds size285
COG categoryS
BRITEko00000,ko00001,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.7731946-UTR-H-akashiwo_Contig104:341371..3415311681387059.7731946-UTR-H-akashiwo_Contig104:341371..341531Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig104 341372..341531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.7897458-CDS-H-akashiwo_Contig104:341531..3416301681387059.7897458-CDS-H-akashiwo_Contig104:341531..341630Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 341532..341630 -
1681387059.797768-CDS-H-akashiwo_Contig104:341809..3419471681387059.797768-CDS-H-akashiwo_Contig104:341809..341947Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 341810..341947 -
1681387059.805606-CDS-H-akashiwo_Contig104:342640..3426881681387059.805606-CDS-H-akashiwo_Contig104:342640..342688Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 342641..342688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig104.6.1prot_H-akashiwo_Contig104.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig104 341532..342688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig104.6.1

>prot_H-akashiwo_Contig104.6.1 ID=prot_H-akashiwo_Contig104.6.1|Name=mRNA_H-akashiwo_Contig104.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=95bp
KAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSK
LISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLKLSSSS*
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mRNA from alignment at H-akashiwo_Contig104:341372..342688-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig104.6.1 ID=mRNA_H-akashiwo_Contig104.6.1|Name=mRNA_H-akashiwo_Contig104.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1317bp|location=Sequence derived from alignment at H-akashiwo_Contig104:341372..342688- (Heterosigma akashiwo CCMP452)
AAGGCCGCGCTGTTCGCCTACCCCGTGGCCTGGGCCGTGGTGGACGAGGT TGGTGCGAACATGACTGATTCTGTATCGCTAAGTATTAACTGTACAATGT GGAGATCTTTCTACTACCCGAGAATTCTTTAGCGCTGTCTTGGCTGTATC AGGTGGGGAATTTTCTGCCTGAGCTAAGTCACGGAGACTTATATGTCCCT GGAATGAGACAGGGTTTATTGAAGAACAAGAAGAAGAAGAAATATGGGCT TACTATGTATCACCTGATACATTCCGCTGAAGAGTTGTAAAATCTGGGTT CCGAAGAATTTAGAGGCTTGTGAAATTTCTAAGTTTTTTGTTAAATCCTC GAATAAAAATGGTGGGTAATTAAAAATTTCTAAAACCGTCAAAATCCATT TAACTCTCATCAAAATGACGAAACTTTCGCGAGAAATCCCATTAATTTCT TAAGTAGATCTTCATTGGGGCGCACCTGCTTCTTCTCTTTCAAACTTCTC CTATTTCTTTTTAAAATTGTTGATTTCGGCACATTCCAAACTATCACTAA CTTGGCAACCGCCAACCCGCTACCTTTACATTGGAATACGAGGATCGCGC AATTGACATGCTATACTATAGTGTAGCAACAGTTGTGCATGTATACGCGC ATACATATATTAACTTCTCTATGCACCATGGAGATGAAAAGCAGCGGATG CTGCCTTTTTTTAATTGTATGCTTCCGCTTTGATTTTTCAGCATGATATC ATCAAATCAAAGCTAAAGGCCTGGATCGTCAAAAAGATAGTGGAGTTTTT GGGAGAAGAAGAGGAAACCTTGATTGACTTTATCTGCTCCAAGCTCATCA GCCATGCAGACCCTGAATCTATTCTCGAGGTATGAATGGCTGGCAAAATG GTGGAAGTAGTTTGGCACATATTGTATCATTCAATCAGCACTCAGATATC CACATCTACCCCCCCCCTGCATCCATTTTTACCTCCTGATGCCCTTCTTT GAAGTCTTTTCGCACTCTAATATGATATGTTTGTTTGCACTGTATCACTA AATGATAGGAGCTAAAACTGGTTCTTGATGATGATGCTGAGATTTTCATG GTCAAGCTGTGGCGAATGCTGATTTTCCACGTCTTGAAGCTCAGTTCTTC TTCGTAGCAGCATTCATTCTGGGCCACCATACTTACAACATTATTTAATA ATGAATAATAAACAAATAAATAATTATGACGAACTTTCCTTGTGTTGCTA CACTGCCGATGAACAACAGCAGTGATTTATACTCTATGTGTTCATGTAAT GTATTAGATAAAGATGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig104:341372..342688-

>mRNA_H-akashiwo_Contig104.6.1 ID=mRNA_H-akashiwo_Contig104.6.1|Name=mRNA_H-akashiwo_Contig104.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=285bp|location=Sequence derived from alignment at H-akashiwo_Contig104:341372..342688- (Heterosigma akashiwo CCMP452)
AAGGCCGCGCTGTTCGCCTACCCCGTGGCCTGGGCCGTGGTGGACGAGCA
TGATATCATCAAATCAAAGCTAAAGGCCTGGATCGTCAAAAAGATAGTGG
AGTTTTTGGGAGAAGAAGAGGAAACCTTGATTGACTTTATCTGCTCCAAG
CTCATCAGCCATGCAGACCCTGAATCTATTCTCGAGGAGCTAAAACTGGT
TCTTGATGATGATGCTGAGATTTTCATGGTCAAGCTGTGGCGAATGCTGA
TTTTCCACGTCTTGAAGCTCAGTTCTTCTTCGTAG
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