mRNA_H-akashiwo_Contig104.32.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig104.32.1
Unique NamemRNA_H-akashiwo_Contig104.32.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Match: A0A6V1P7M0_HETAK (Histone H2A n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7M0_HETAK)

HSP 1 Score: 229 bits (584), Expect = 1.300e-75
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 1
Query:    1 MAGKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKAKTA 360
            MAGKAGRGKKSQT+SSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKK KTA
Sbjct:   27 MAGKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKTA 146          
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Match: A0A7S3UYM8_HETAK (Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYM8_HETAK)

HSP 1 Score: 212 bits (539), Expect = 1.540e-68
Identity = 108/116 (93.10%), Postives = 112/116 (96.55%), Query Frame = 1
Query:    4 AGKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKA 351
            A   GRGKKSQ+KSSKAGLQFPVGRIGRYLK GRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRI+PRHLQLAVRNDEELNKLLGGVTI+QGGVLPNIHTVLLPKK+
Sbjct:   34 AAAGGRGKKSQSKSSKAGLQFPVGRIGRYLKNGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTISQGGVLPNIHTVLLPKKS 149          
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Match: A0A7S2GRL8_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRL8_9STRA)

HSP 1 Score: 197 bits (502), Expect = 2.760e-63
Identity = 99/115 (86.09%), Postives = 108/115 (93.91%), Query Frame = 1
Query:    7 GKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKA 351
            GK GRGKKS T S+KAGLQFPVGRIGRYLKQG+++ R+GAGAPVYLAAVLEYLCAEILELAGNAARDNKK+RI PRH+ LAV+NDEELNKLLGGVTIA GGVLPNIH+VLLPKKA
Sbjct:    5 GKGGRGKKSTTSSAKAGLQFPVGRIGRYLKQGKFATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIAPRHITLAVKNDEELNKLLGGVTIAGGGVLPNIHSVLLPKKA 119          
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Match: A0A7S2V3S5_9STRA (Histone H2A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3S5_9STRA)

HSP 1 Score: 196 bits (499), Expect = 4.560e-63
Identity = 97/110 (88.18%), Postives = 106/110 (96.36%), Query Frame = 1
Query:   25 KKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKAK 354
            KKS TKS+KAGLQFPVGRIGR+LK+GRY+ RVGAGAPVY+AAVLEYLCAEILELAGNAARDNKK+RI+PRHLQLA+RNDEELNKLLGGVTI+QGGVLPNIH VLLPKK K
Sbjct:    7 KKSVTKSTKAGLQFPVGRIGRFLKKGRYAPRVGAGAPVYMAAVLEYLCAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPNIHAVLLPKKTK 116          
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Match: A0A7R9YCM0_9STRA (Histone H2A n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCM0_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.750e-62
Identity = 96/110 (87.27%), Postives = 105/110 (95.45%), Query Frame = 1
Query:   28 KSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKAKT 357
            KS T+SSKAGLQFPVGR+GRYLKQGRY  R+G+GAPVYLAAVLEYLCAEILELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIAQGGVLPNIH VLLPKK+K+
Sbjct:   22 KSMTRSSKAGLQFPVGRVGRYLKQGRYCDRIGSGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGNVTIAQGGVLPNIHNVLLPKKSKS 131          
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 194 bits (493), Expect = 4.400e-62
Identity = 99/116 (85.34%), Postives = 108/116 (93.10%), Query Frame = 1
Query:    7 GKAGRG-KKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKA 351
            GK GRG KKS T S+KAGLQFPVGRIGRYL+QG+Y+ R+GAGAPVYLAAVLEYLCAEILELAGNAARDNKK+RIVPRH+ LAV+NDEELNKLLGGVTIA GGVLPNIH VLLPKK+
Sbjct:    5 GKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKS 120          
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 6.260e-62
Identity = 96/114 (84.21%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    7 GKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKK 348
            GK GRGKKS T+S+KAGLQFPVGR+GR+LK+G+Y++RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK RI+PRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKK
Sbjct:    5 GKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118          
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 6.700e-62
Identity = 98/115 (85.22%), Postives = 106/115 (92.17%), Query Frame = 1
Query:    7 GKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKA 351
            GK GRGKKS +KSSKAGLQFPV RIGRYLK+G+Y+ RVGAGAPVYLAAVLEYL AE+LELAGNAARDNKK RI+PRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKK+
Sbjct:    5 GKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119          
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Match: A0A7S0S3G4_9CHLO (Histone H2A n=2 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S3G4_9CHLO)

HSP 1 Score: 194 bits (493), Expect = 7.390e-62
Identity = 95/115 (82.61%), Postives = 109/115 (94.78%), Query Frame = 1
Query:   10 KAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKAK 354
            K G GKK+Q++S+KAGLQFPVGRI RYLK+G+Y+ R+GAGAPVYLAAVLEYLCAE+LELAGNAARDNKKTRIVPRH+QLA+RNDEEL+KLLG VTIA GGVLPNIH+VLLPKK+K
Sbjct:   16 KGGSGKKAQSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLCAEVLELAGNAARDNKKTRIVPRHIQLAIRNDEELSKLLGEVTIASGGVLPNIHSVLLPKKSK 130          
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 193 bits (491), Expect = 8.890e-62
Identity = 98/116 (84.48%), Postives = 108/116 (93.10%), Query Frame = 1
Query:    7 GKAGRG-KKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKA 351
            GK GRG KKS T S+KAGLQFPVGRIGRYL+QG+Y+ R+GAGAPVYLAAVLEYLCAEILELAGNAARDNKK+RIVPRH+ LAV+NDEELNKLLGGVTIA GGVLPNIH +LLPKK+
Sbjct:    5 GKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKS 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig104.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P7M0_HETAK1.300e-7598.33Histone H2A n=2 Tax=Heterosigma akashiwo TaxID=282... [more]
A0A7S3UYM8_HETAK1.540e-6893.10Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=282... [more]
A0A7S2GRL8_9STRA2.760e-6386.09Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740... [more]
A0A7S2V3S5_9STRA4.560e-6388.18Histone H2A n=1 Tax=Fibrocapsa japonica TaxID=9461... [more]
A0A7R9YCM0_9STRA2.750e-6287.27Histone H2A n=1 Tax=Pinguiococcus pyrenoidosus Tax... [more]
A0A6U2JFS4_9STRA4.400e-6285.34Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]
D7FWI9_ECTSI6.260e-6284.21Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6H5KG79_9PHAE6.700e-6285.22Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S0S3G4_9CHLO7.390e-6282.61Histone H2A n=2 Tax=Chlamydomonas leiostraca TaxID... [more]
A0A448ZH28_9STRA8.890e-6284.48Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig104contigH-akashiwo_Contig104:988206..988568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps19793
PFAMsHistone,Histone_H2A_C
Model size363
Max annot lvl2836|Bacillariophyta
KEGG koko:K11251
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.95e-63
EggNOG OGsCOG5262@1|root,KOG1756@2759|Eukaryota,2XCAY@2836|Bacillariophyta
DescriptionHistone H2A
Cds size363
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387060.4719124-CDS-H-akashiwo_Contig104:988205..9885681681387060.4719124-CDS-H-akashiwo_Contig104:988205..988568Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 988206..988568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig104.32.1prot_H-akashiwo_Contig104.32.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig104 988206..988568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig104.32.1

>prot_H-akashiwo_Contig104.32.1 ID=prot_H-akashiwo_Contig104.32.1|Name=mRNA_H-akashiwo_Contig104.32.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=121bp
MAGKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAA
VLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIA
QGGVLPNIHTVLLPKKAKTA*
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mRNA from alignment at H-akashiwo_Contig104:988206..988568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig104.32.1 ID=mRNA_H-akashiwo_Contig104.32.1|Name=mRNA_H-akashiwo_Contig104.32.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=363bp|location=Sequence derived from alignment at H-akashiwo_Contig104:988206..988568+ (Heterosigma akashiwo CCMP452)
ATGGCCGGAAAAGCTGGACGCGGAAAGAAGTCTCAGACCAAGAGCTCAAA GGCTGGTCTTCAGTTTCCTGTGGGTCGTATTGGCCGCTACCTGAAGCAGG GCCGTTACTCAGCCCGTGTGGGTGCTGGTGCACCTGTGTACCTCGCCGCC GTACTCGAGTACCTGTGCGCCGAGATTCTTGAGCTCGCCGGCAACGCCGC TCGCGATAATAAAAAGACCAGAATTGTCCCTCGTCACCTGCAGCTCGCCG TCAGAAACGACGAGGAGTTGAACAAGCTTCTGGGTGGTGTGACCATCGCC CAGGGTGGTGTGCTGCCCAACATCCACACTGTCCTTCTCCCAAAGAAGGC CAAGACTGCCTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig104:988206..988568+

>mRNA_H-akashiwo_Contig104.32.1 ID=mRNA_H-akashiwo_Contig104.32.1|Name=mRNA_H-akashiwo_Contig104.32.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=363bp|location=Sequence derived from alignment at H-akashiwo_Contig104:988206..988568+ (Heterosigma akashiwo CCMP452)
ATGGCCGGAAAAGCTGGACGCGGAAAGAAGTCTCAGACCAAGAGCTCAAA
GGCTGGTCTTCAGTTTCCTGTGGGTCGTATTGGCCGCTACCTGAAGCAGG
GCCGTTACTCAGCCCGTGTGGGTGCTGGTGCACCTGTGTACCTCGCCGCC
GTACTCGAGTACCTGTGCGCCGAGATTCTTGAGCTCGCCGGCAACGCCGC
TCGCGATAATAAAAAGACCAGAATTGTCCCTCGTCACCTGCAGCTCGCCG
TCAGAAACGACGAGGAGTTGAACAAGCTTCTGGGTGGTGTGACCATCGCC
CAGGGTGGTGTGCTGCCCAACATCCACACTGTCCTTCTCCCAAAGAAGGC
CAAGACTGCCTAA
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