mRNA_H-akashiwo_Contig104.31.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig104.31.1
Unique NamemRNA_H-akashiwo_Contig104.31.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.790e-61
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 MAKTPGKKSAMAPKKAGKGTKKKARTESYSMYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTP KKSA APKKAG   +   RTESYS YIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+GKL+RYNKK TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
[Close]
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 190 bits (483), Expect = 1.030e-60
Identity = 101/116 (87.07%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 MAKTPGKKSAMAPKKAGKGTKKKARTESYSMYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTP K+SA APKKA  GTK K RTE+YS YIYKVLKQVHPDTGISK+GMSIMNSFINDIFERIA EAGKL+ YNKK TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.100e-60
Identity = 103/117 (88.03%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:    1 MAKTPGKKSAMAPKKAGKGTKKKA-RTESYSMYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK P KK+A APKKA  G KKKA RTESY  YIYKVLKQVHPDTGISKRGMSIMNSFIND+FERIA EAGKL+RYNKK TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
[Close]
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.380e-60
Identity = 100/116 (86.21%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPGKKSAMAPKKAGKGTKKKARTESYSMYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTP KKSA APKKAG   KK  RTESYS YIYKVLKQVHP+TGISK+GMSIMNSFINDIFER+AGEAG+L+RY+KK TLSSREIQT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
[Close]
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Match: W7TEP7_9STRA (Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEP7_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.340e-60
Identity = 99/116 (85.34%), Postives = 105/116 (90.52%), Query Frame = 1 
Query:    1 MAKTPGKKSAMAPKKAGKGTKKKARTESYSMYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTP KKSA APKKAGKGTKKK R ESY  YIYKVLKQVHPDTGISKRG+SI+NSFI DIF+R+A EAGKL+RY KK TLSSREIQTAVRL LPGELAKHAVSEGTKAVTK+TSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116
[Close]
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.680e-59
Identity = 104/118 (88.14%), Postives = 106/118 (89.83%), Query Frame = 1 
Query:    1 MAKTPGKKSAMAPKKAG-KGTKKKA-RTESYSMYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTP KKSA APKK G KG  +K  R ESYS YIYKVLKQVHP+TGISKRGMSIMNSFINDIFERIA EAGKLSRYNKK TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
[Close]
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 190 bits (483), Expect = 7.370e-59
Identity = 103/117 (88.03%), Postives = 106/117 (90.60%), Query Frame = 1 
Query:    1 MAKTPGKKSAMAPKKAGKGTKKKA-RTESYSMYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK P KK+A APKKA  G KKKA RTESY  YIYKVLKQVHPDTGISKRGMSIMNSFIND+FERIA EAGKL+RYNKK TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
[Close]
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 183 bits (465), Expect = 5.380e-58
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 MAKTPGKKSAMAPKKAGKGTKKKARTESYSMYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTP KK+A APKKAG  +K+  R E+YS YIYKVLKQVHPDTGISKRGMSIMNSFINDIFER+AGEA +L+RYNK+ TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAG--SKRNKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
[Close]
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.930e-57
Identity = 100/116 (86.21%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 MAKTPGKKSAMAPKKAGKGTKKKARTESYSMYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTP KK+A APKKAG G + + RTESYS YIYKVLKQVHPDTGISK+GMSIMNSFINDIFERIA EAGKLS YNKK TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAG-GKRSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Match: A0A7S4ACZ1_9STRA (Histone H2B n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ACZ1_9STRA)

HSP 1 Score: 181 bits (460), Expect = 3.650e-57
Identity = 100/119 (84.03%), Postives = 104/119 (87.39%), Query Frame = 1 
Query:    1 MAKTPGKKSAMA---PKKAGKGTKKKARTESYSMYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTP KK+A A   P K G G KKK R ESYS YIYKVLKQVHPDTGISK+GMSIMNSFINDIFERIA EAGKL+ YNKK TLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKKAAPAAKNPPKKGPGGKKKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig104.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI1.790e-6186.21Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
B7FWR8_PHATC1.030e-6087.07Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A836CJ22_9STRA1.100e-6088.03Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A6U0X3U9_9STRA2.380e-6086.21Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
W7TEP7_9STRA4.340e-6085.34Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A485K2U0_9STRA2.680e-5988.14Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
A0A836CJT3_9STRA7.370e-5988.03Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU5.380e-5883.62Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A6U6DWX5_9STRA1.930e-5786.21Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
A0A7S4ACZ1_9STRA3.650e-5784.03Histone H2B n=1 Tax=Pseudo-nitzschia australis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig104contigH-akashiwo_Contig104:987041..987391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWI8
PFAMsHistone
Model size351
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue2.93e-62
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size351
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387060.4378474-CDS-H-akashiwo_Contig104:987040..9873911681387060.4378474-CDS-H-akashiwo_Contig104:987040..987391Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 987041..987391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig104.31.1prot_H-akashiwo_Contig104.31.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig104 987041..987391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig104.31.1

>prot_H-akashiwo_Contig104.31.1 ID=prot_H-akashiwo_Contig104.31.1|Name=mRNA_H-akashiwo_Contig104.31.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp
MAKTPGKKSAMAPKKAGKGTKKKARTESYSMYIYKVLKQVHPDTGISKRG
MSIMNSFINDIFERIAGEAGKLSRYNKKMTLSSREIQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at H-akashiwo_Contig104:987041..987391-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig104.31.1 ID=mRNA_H-akashiwo_Contig104.31.1|Name=mRNA_H-akashiwo_Contig104.31.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig104:987041..987391- (Heterosigma akashiwo CCMP452)
ATGGCAAAGACCCCTGGCAAGAAGTCCGCTATGGCCCCTAAGAAGGCCGG
CAAGGGCACCAAGAAGAAGGCCCGTACGGAATCGTACAGCATGTACATCT
ACAAAGTCTTGAAGCAGGTGCATCCCGATACCGGCATCTCCAAGCGCGGC
ATGTCCATCATGAACTCGTTCATTAACGACATTTTCGAGCGCATCGCTGG
CGAGGCTGGCAAGCTTTCCCGTTACAACAAGAAGATGACCTTGTCTTCCA
GGGAGATCCAGACAGCCGTGCGCCTTATGCTCCCTGGTGAGCTGGCCAAG
CACGCTGTGTCCGAGGGCACCAAGGCGGTGACCAAGTTCACTTCTTCCTA
A
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Coding sequence (CDS) from alignment at H-akashiwo_Contig104:987041..987391-

>mRNA_H-akashiwo_Contig104.31.1 ID=mRNA_H-akashiwo_Contig104.31.1|Name=mRNA_H-akashiwo_Contig104.31.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig104:987041..987391- (Heterosigma akashiwo CCMP452)
ATGGCAAAGACCCCTGGCAAGAAGTCCGCTATGGCCCCTAAGAAGGCCGG
CAAGGGCACCAAGAAGAAGGCCCGTACGGAATCGTACAGCATGTACATCT
ACAAAGTCTTGAAGCAGGTGCATCCCGATACCGGCATCTCCAAGCGCGGC
ATGTCCATCATGAACTCGTTCATTAACGACATTTTCGAGCGCATCGCTGG
CGAGGCTGGCAAGCTTTCCCGTTACAACAAGAAGATGACCTTGTCTTCCA
GGGAGATCCAGACAGCCGTGCGCCTTATGCTCCCTGGTGAGCTGGCCAAG
CACGCTGTGTCCGAGGGCACCAAGGCGGTGACCAAGTTCACTTCTTCCTA
A
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