mRNA_H-akashiwo_Contig104.26.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig104.26.1
Unique NamemRNA_H-akashiwo_Contig104.26.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 251 bits (642), Expect = 3.850e-84
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   31 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 438
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 250 bits (639), Expect = 1.350e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   31 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 438
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.770e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   31 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 438
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Match: A0A3B5KMI2_TAKRU (Histone H3 n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A3B5KMI2_TAKRU)

HSP 1 Score: 250 bits (638), Expect = 1.850e-83
Identity = 134/139 (96.40%), Postives = 137/139 (98.56%), Query Frame = 1 
Query:   22 HLQMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 438
            HL MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 HLVMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 141
[Close]
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Match: A0A3P9AWS4_9CICH (Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A3P9AWS4_9CICH)

HSP 1 Score: 249 bits (637), Expect = 2.630e-83
Identity = 134/140 (95.71%), Postives = 138/140 (98.57%), Query Frame = 1 
Query:   19 SHLQMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 438
            SH +MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 SHERMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 141
[Close]
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Match: UPI0011763522 (histone H3-like n=1 Tax=Myripristis murdjan TaxID=586833 RepID=UPI0011763522)

HSP 1 Score: 249 bits (637), Expect = 6.320e-83
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 1 
Query:   16 ESHLQMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 438
            E++L MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   27 ENYLAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 167
[Close]
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Match: D2I080_AILME (Histone H3 (Fragment) n=3 Tax=Laurasiatheria TaxID=314145 RepID=D2I080_AILME)

HSP 1 Score: 248 bits (633), Expect = 1.000e-82
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:   25 LQMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 438
            L+MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 LEMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
[Close]
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Match: A0A674HX56_TERCA (Histone H3 n=3 Tax=Amniota TaxID=32524 RepID=A0A674HX56_TERCA)

HSP 1 Score: 248 bits (633), Expect = 1.070e-82
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1 
Query:   25 LQMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 438
            L+MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    4 LRMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 141
[Close]
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Match: UPI001C0866E4 (histone H3-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C0866E4)

HSP 1 Score: 248 bits (633), Expect = 1.270e-82
Identity = 133/141 (94.33%), Postives = 138/141 (97.87%), Query Frame = 1 
Query:   16 ESHLQMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 438
            E ++ MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    6 EEYVAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 146
[Close]
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 248 bits (632), Expect = 1.290e-82
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 1 
Query:   31 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 438
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFKTDLRFQ SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig104.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA3.850e-84100.00Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A6V1P6C6_HETAK1.350e-8399.26Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A7S1BJN3_9STRA1.770e-8399.26Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A3B5KMI2_TAKRU1.850e-8396.40Histone H3 n=2 Tax=Clupeocephala TaxID=186625 RepI... [more]
A0A3P9AWS4_9CICH2.630e-8395.71Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
UPI00117635226.320e-8395.04histone H3-like n=1 Tax=Myripristis murdjan TaxID=... [more]
D2I080_AILME1.000e-8296.38Histone H3 (Fragment) n=3 Tax=Laurasiatheria TaxID... [more]
A0A674HX56_TERCA1.070e-8296.38Histone H3 n=3 Tax=Amniota TaxID=32524 RepID=A0A67... [more]
UPI001C0866E41.270e-8294.33histone H3-like n=1 Tax=Alosa sapidissima TaxID=34... [more]
A7RJG4_NEMVE1.290e-8297.79Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig104contigH-akashiwo_Contig104:921183..921623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008614757.1
PFAMsHistone
Model size441
Max annot lvl2759|Eukaryota
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons1
Evalue1.2e-84
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Descriptionprotein heterodimerization activity
Cds size411
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387060.3267357-UTR-H-akashiwo_Contig104:921182..9212121681387060.3267357-UTR-H-akashiwo_Contig104:921182..921212Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig104 921183..921212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387060.3380888-CDS-H-akashiwo_Contig104:921212..9216231681387060.3380888-CDS-H-akashiwo_Contig104:921212..921623Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig104 921213..921623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig104.26.1prot_H-akashiwo_Contig104.26.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig104 921213..921623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig104.26.1

>prot_H-akashiwo_Contig104.26.1 ID=prot_H-akashiwo_Contig104.26.1|Name=mRNA_H-akashiwo_Contig104.26.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
back to top

mRNA from alignment at H-akashiwo_Contig104:921183..921623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig104.26.1 ID=mRNA_H-akashiwo_Contig104.26.1|Name=mRNA_H-akashiwo_Contig104.26.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=441bp|location=Sequence derived from alignment at H-akashiwo_Contig104:921183..921623+ (Heterosigma akashiwo CCMP452)
CCAAAAAAAAAAGAAGAATCGCATTTACAAATGGCCCGTACCAAGCAAAC
CGCCCGCAAGTCCACTGGTGGCAAGGCTCCTCGCAAGCAGCTCGCCACTA
AGGCTGCTCGCAAGTCCGCCCCCGCTACTGGTGGCGTGAAGAAGCCCCAC
AGATACCGCCCTGGTACTGTCGCTCTTCGTGAGATCAGACGTTACCAGAA
GTCCACCGAGCTCCTGATCCGCAAGCTTCCTTTCCAGAGACTGGTCAGAG
AGATTGCTCAGGACTTCAAGACTGATCTGAGATTCCAGGGGTCCGCTGTC
CTTGCCCTTCAGGAAGCCGCTGAGGCTTACCTTGTGGGTCTGTTCGAGGA
CACCAACCTCTGCGCCATCCACGCCAAGCGTGTGACCATCATGCCCAAGG
ACATCCAGCTTGCCCGCAGAATCCGCGGCGAGCGGTCTTAA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig104:921183..921623+

>mRNA_H-akashiwo_Contig104.26.1 ID=mRNA_H-akashiwo_Contig104.26.1|Name=mRNA_H-akashiwo_Contig104.26.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=411bp|location=Sequence derived from alignment at H-akashiwo_Contig104:921183..921623+ (Heterosigma akashiwo CCMP452)
ATGGCCCGTACCAAGCAAACCGCCCGCAAGTCCACTGGTGGCAAGGCTCC
TCGCAAGCAGCTCGCCACTAAGGCTGCTCGCAAGTCCGCCCCCGCTACTG
GTGGCGTGAAGAAGCCCCACAGATACCGCCCTGGTACTGTCGCTCTTCGT
GAGATCAGACGTTACCAGAAGTCCACCGAGCTCCTGATCCGCAAGCTTCC
TTTCCAGAGACTGGTCAGAGAGATTGCTCAGGACTTCAAGACTGATCTGA
GATTCCAGGGGTCCGCTGTCCTTGCCCTTCAGGAAGCCGCTGAGGCTTAC
CTTGTGGGTCTGTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCG
TGTGACCATCATGCCCAAGGACATCCAGCTTGCCCGCAGAATCCGCGGCG
AGCGGTCTTAA
back to top