mRNA_H-akashiwo_Contig1038.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1038.5.1
Unique NamemRNA_H-akashiwo_Contig1038.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1038.5.1 vs. uniprot
Match: A0A7S3YK38_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK38_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 8.890e-26
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 QATRSPQYQASSGQPAMFLPETQGTIGTSSNLSSMRRLSGDSRRDGQRRLSAGA 162
            QATRSPQYQASSGQPAMFLPETQGTIGTSSNLSSMRRLSGDSRRDGQRRLSAGA
Sbjct:   55 QATRSPQYQASSGQPAMFLPETQGTIGTSSNLSSMRRLSGDSRRDGQRRLSAGA 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1038.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YK38_HETAK8.890e-26100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1038contigH-akashiwo_Contig1038:214677..219963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387059.0867097-CDS-H-akashiwo_Contig1038:214676..2147461681387059.0867097-CDS-H-akashiwo_Contig1038:214676..214746Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1038 214677..214746 +
1681387059.0972424-CDS-H-akashiwo_Contig1038:219869..2199611681387059.0972424-CDS-H-akashiwo_Contig1038:219869..219961Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1038 219870..219961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1038.5.1prot_H-akashiwo_Contig1038.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1038 214677..219961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1038.5.1

>prot_H-akashiwo_Contig1038.5.1 ID=prot_H-akashiwo_Contig1038.5.1|Name=mRNA_H-akashiwo_Contig1038.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
QATRSPQYQASSGQPAMFLPETQGTIGTSSNLSSMRRLSGDSRRDGQRRL
SAGA
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mRNA from alignment at H-akashiwo_Contig1038:214677..219963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1038.5.1 ID=mRNA_H-akashiwo_Contig1038.5.1|Name=mRNA_H-akashiwo_Contig1038.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=5287bp|location=Sequence derived from alignment at H-akashiwo_Contig1038:214677..219963+ (Heterosigma akashiwo CCMP452)
CAGGCTACTCGTAGCCCACAGTACCAAGCTTCCTCCGGTCAGCCTGCAAT
GTTCTTGCCTGAGACTCAAGGTATAGAAATGTCAAAAACGAGAAACTATT
AACATTATGAGTGTGCGTGTACCTAACTTATGTACCACCACAATAATATG
TTATATATATATCCTTTACCAGGGCATGCTGAGCCCTTCGGGACCATGTT
GTTGATTGGTACAACTACTGTTTGTTTTCAATAGTGGTGCTGGGTGGAAC
AACAGGACCATAGTTTTTTTGATGTGTTGACAAGGGCTACGCCCCCGCTG
GGACCCCCCAGATACATGGTGATGATGTTTTCTTCTAGCGGTGGGAAATT
CCTATGCTGTGGTGCTGCTGCAGGTAGGTAGGTGCTGCTGCTTTTTGATA
AATAGTTTATACATCATACCTGCATAAAGCGGGAAAGCAGGAGGGGGCTT
GGTGTTGTGATTTTGGGGAGGGGGAGACAAAGGATGTGGAAGGTGGGGAT
GCAGGGGCAGGAACTAAGTGGTCTCATTATCATCAAAAATGAAATGCGGG
CAAGTATGGTGAGCATGCTGAGGAAGGTGGAGAGGCTTTCAGCAAGGCTT
GTGCAGAGGACGGATAGAGTGGATTTCCTCATGTTCCCTCATCCTTCTTC
TATAGTTTCTGGGCAAGCTGTACTCCGACAACAATCCTGGATCACGGCCG
GACCGCATTCTCTCTTACCCTCGGTGTGTTGCTGATTGTTCAACAGTTCA
GATGGATAGGCTATACAATACATATCATGTGCATATTATAGGGGGGGGGA
ACGCTAAAAGGGTACAATTGTCTCAGAAATTTTCAAATTGCAAGTTTTTC
GCGAAAAAAGGCACCTTTTTGCACCGCCGAGAAAGAAAACTACCGCTAAA
TATCGTATCTTGTGGCCTTGAAATTTAGCGAGCATTCGAAATTTTAAAAA
GGTAAGTTTTTGAAAAAATCCGAAAACCCGCGATTACACTGAAAAATGCC
CCAATTTCCAATTCCCACCACCTCCTCCTCCTTGTCCTTCTAACTTCTAC
TTTATCGAGTCCTCACACTCTGCTGCTGCTATACTCCTCCTCCTCCATCT
TGGTATATCCACCGTCGTCAAAACGTCAAAACTGTTTCGACGAAGGAGTC
TTGTTCGATTGATATCGGGGGCGGCGAGCAGTTCGACAAAGTGGGGCGAT
CGATAGATAAACTAAGCTAGCCAACCCATGAGATCTATGTCTATGCTGGG
CGAAAAGAGAAGGGCGAAGGCTTGGGCGGGGGTATCTATTGCGTCACTAA
AGGCATTAGTTGCTAACGTACGTAGTATGCGCCAAGCTTGTGGAGAACTA
GCCGcAACGGCTCATGATATCTCTGCTCATGTCATTTGCGTGGCGGAGAC
ATTTCTAGATGGCGTCGCGATCAATCCTTTGACACCTGGCGGTTACATTT
GTGCTGGTCGGCGTGATAGAACGAAGCATGGTGGGGGAGTCTTGATATTT
CTTCGGGATTCTCTGTAAAACTCTTTCACTACTACATATTCGCTAATACA
CTCTTGTAAAACCACAAATGTAAAGCCTCCACCACTACATGCTAACCCTG
CTAAACTACAGAAATAATAATATAAATAATGAATAAACCAACATTCTCTT
CTTTTTTCAGCTTACGACACTAGTGCGTACCATATCCCGGAAACGGTCGA
GATGGTTGCTGTTCGAATCGAAGAGCTGGGGGTGGTGATCATCACAGTAT
ATGCCCAACCAAGCGAGAAAAACACCGATCTCATCATTGCCCTTGGAAAA
CTTCAGGCTAAGATTGAGGCTGACGGTCTGAAGCCTGTCATTTGTGGAGA
CTTCAATGCGCATAATAAAGATTTTCTTTGTTCATCCCCAAAGTCAAATG
TTCGTGGAGAGAGGTTGCAGGAATTTGAGAGAACCACAACATGATGAATG
TGGTGAAAAAGCCGACGAGGGGCAAGAACTTCTTGGATCTAGTGCTTACG
CCTTGTGCAGGTAAAGCTCGACTTTTGCCAAAGATGGGATCCTCGGATCA
TGATGCAGTTCTGGCTACGCTGGGCTTTTCCCTGAAGGTTGAAGAGCCTG
TGCCTGGAAGAAAACTATATCACTGGAGTCTTGCTAACTGGAGGGAAATG
AAAGCGGAACTGAGCAGTACTTCTTTTGATTTTGAAAACCTTACTGGCCA
GGAGTCTGTTGACTTGCTCACAAACACCCTGAAGGAGCTCACCGACAAAT
ATGTTCCTTCATCAGCCCCCACCACAGGCAATCCCCTGCCCTGGTGGACC
CCTGAGTGTGAGTGGGCCCTGAGGTGGAAGCAGCGGGCTTTTCAAGGAGG
CAACAAGAAAGCCATCATGTGGGCCACCAAATGCTACCTTCAAGTGTGCA
GGAGAGCCTATGGCAAGTACATGGAGCGGCTCAAGACCAAACTTGCCAAG
AAGGGGACCAGTGACAGAGAGTTCTGGCAGATCACCAAATCGCACTCCGG
CATGACTAGATAGCGGCGGAAAGCTGCCCCCCCCTGCTGAAGACCTGGCA
AAATACTTCGCCAAGAAGGTGGGCCTACCTGGTGAGGAGAGCAAAGAAGT
GCTCGAGCTGGAGCCGGCTCCACTGAGCCTGGAGCCAGAAGGTTGCGGGG
CTTCAAGATCACCTTGCGGAAAGTGTCTGAGGTGCTGCAGTCGCTGGACG
TGCGCAAATCGGTGGGCCCAGACGGAGTTAGCCCGCGGGTACTGAAGCAC
TGCGCCCGGCAGCTGGCGCACCCTCTCACTCAGCTTTTTCAGAAAGTGTG
CTAATCTGGTGAGTTCCCCAGGAGCTGGAAAGTGGCAAGGGTCACCCCTG
TCTACAAGAAGAAGGGTGCCAGCCTCCTGGAGAACTGCCGGCTGATCTCA
GTGCTGCCCACTTTGGCCACCACGTTTGAGCGCGTTCTCATGAAGCAGCT
CAGCAGTTTTCTCTTCGGGCACATCCTGCCCAACCAGTTTGGCTTCCTAC
CTGGTACGGGGACTGTGGATGTCGGCGTTATCCTCGCTGACACAATCTCC
CTAGCCCTTGAAGCCAGGAACGATGTGCGGTTGGTTGCGCTTTCGACTTC
AAGGGTGCCTTTGATAAGGTGTGGTGGCGGGGTCTGCTTGCTCATCTCTT
GGCGGTGGGTGTGCGCTCCAAGGCCTTCAAGCTGATGCAGAGCTACTTGT
CAGACCGGGGCCCTTTTTTAGTGGCAAACAGTGACAGCTCCAGTCATATG
AGCATCAAGTCTGGGGTGCCGCGGGGGCCATCTGGTCGCCTCTCCTCTTT
GACCTCTTCATGCATGGCGTCCCACAGCGAGTCAGGGAGGCTCTATGCCT
CTTCTACGCAGATGACCTCACCCTCCAGAAGGATGTATACAGGGAAGGGG
CGGGCGCATAGGGCAGCAGAGGAGCTGAACGATGATCTGCAGCGCCTCTA
TGAGTTTGGCAAGGAGTGGCTACTAGAGTTTGAACCTACCAAATCCCAGG
AGCTGATCACCACCAACTCGGTTGCAGATCACAAGATGACTCACACCCCT
CTATGCATGGGGGGAGTGATTGTTGAAGAGAAGGAGCAGCTGGAGGCGCT
GGGTTTCACCATTGATCCGCGAGGTAACTGGTCCCTACATGCCGAGGCAG
TAGCCAAGGAGGCCCGGAAGAGGCTTGGTGCCATTAGGAGGATCGCCCAC
ATGCTGGATGATCGTGCCAAGATGATGGCCTACAAGGCTTTTGTACGATC
AAAGATGACCCCATCTACTGGGGGGCGGCCGAGGGCTATCTCGAAAAACT
TGACAGGGTTCAAAGCAGTGCTGTCTCGATGCTCGCGGACTCGTCTGCCT
TCTTCATCCCCTCGCTGGAAAGTAGGAGGCAGGCCGCGGCAGTTGGCCTC
ACCTGCAAACTGCTCGATGGCCAAGGGCGGGGGGCGCTGAGTGAAGTGCA
GCCAGTGTTTGCTCCTCCTACGACCGAGCCCACAAGATCCTCTGACAGAC
TCGCAGCACAACGGGCGGCGGGGCCGCAGCACCCTCATCAACTGAAGGCT
GCTGCAATCCGTCACACAGGGAACATGTGCTCACTGGTGACGTACAAAAG
GAGCTACAGAGCAAGAATCCCAGAGATATGGAACAGCCTCGATTATGAAA
CTCTTCAACAGCAGCGCATAGAAGGTTTCATCCCACTCAGAAAGCAGCTT
CAACGTCATATTATCTTTCAGGCACATCAGAAGTCTTATTAGAAAAAGAA
GGAAAGAAAAAAAAAATGGAAAGAAAGAAAAATACAAATGACATGAGCAG
AGGTAGCATTATAGCCTAGCTGAACTATTTTCTCCACTTTGTGCTTACAC
GTAGATAAAATTAAAAAAAAATGTATGTGAACTTTCTCCCATGCTGCTAT
GGCCAGCCGATTCCGTCCAAAGGGCGAGCCATAGACGTTTGTTTGTTAGC
AGGTACATAAAACATTGATGATTTTGAGACACGGGAATAGTGTCAGTTCC
AAATCCGATTCTATTTCTTCTATTAATGTATTTACCGGAATGAATCTGAT
TAAAGCATTTTGAATGCCAAAATTCCCCACTGTAGCCTCTGCTTGATCAT
TTTGGAATGAGAAGATTGACTGTTCTGAAGGTGCTGGGGGAAGGTGGTAC
AGTTGGTACTATAGGTGGTATGTAGTAGCAGTACTGGTGAAGAATAGTTG
TATACTCATTCATTTTCTAGTCCTCCTTCTTACTTTCTTGTGGTTATACA
TCTTCTAACTATATCACAAGAAGAAGGAGAAAAAGAGAAGAAGAGAATGA
ATTGGGCAAAGGCATAATAAACATGAAGTGAAAGTGTACTATGCCAACAT
CTACCCTCCTGCTCAAATTTGGCTGAACTGATAATCATTTTCAAAAAATT
ACGAAAATCTTCCCAAAATGGTCCTTCTTTCAGTAATACTCATTTCACTC
TGTCTTTTTTTGGCCCCTCCAAACACACTCGCTCACTACTACATATCAAG
CCTGACATATTACACAAGCCAGTACTACGATACAGAATCACCATGTATTG
ATGATAGATATTTGTGTTGTTGTCCTATTATCATTATAATACCTGTTGTT
TAAAAGTGAGAAAAAAGAGTGAAGAACACTGTGCTTATGATGGCATACAA
CAACACTGCCTCATCCTTGCGACACTCACCACTATTACCACAGGAACCAT
AGGGACATCATCAAATTTGAGCAGCATGCGGCGGCTTTCAGGAGACAGCC
GAAGGGATGGGCAACGCCGTTTGTCTGCAGGCGCGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1038:214677..219963+

>mRNA_H-akashiwo_Contig1038.5.1 ID=mRNA_H-akashiwo_Contig1038.5.1|Name=mRNA_H-akashiwo_Contig1038.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig1038:214677..219963+ (Heterosigma akashiwo CCMP452)
CAGGCTACTCGTAGCCCACAGTACCAAGCTTCCTCCGGTCAGCCTGCAAT
GTTCTTGCCTGAGACTCAAGGAACCATAGGGACATCATCAAATTTGAGCA
GCATGCGGCGGCTTTCAGGAGACAGCCGAAGGGATGGGCAACGCCGTTTG
TCTGCAGGCGCG
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