mRNA_H-akashiwo_Contig1034.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1034.9.1
Unique NamemRNA_H-akashiwo_Contig1034.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Match: A0A7S3Y8R9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8R9_HETAK)

HSP 1 Score: 165 bits (417), Expect = 1.330e-45
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 1
Query:    1 ATRGVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGVAHASFQAFLRRVSAQ 255
            ATRGVWERSR DCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGVAHASFQAFLRRVSAQ
Sbjct:  712 ATRGVWERSR-DCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGVAHASFQAFLRRVSAQ 795          
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Match: A0A7S3Y8Q7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8Q7_HETAK)

HSP 1 Score: 127 bits (319), Expect = 6.990e-33
Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    7 RGVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGVAHASFQAFLRRVSAQ 255
            RGVWE  R DCLFDTRI+HAGSPGRAS+ ISY + LN+ AR K+ +YK AAEERRATFCPLI+TV+G+AH S QAFLRR++A+
Sbjct:  344 RGVWEPDR-DCLFDTRIIHAGSPGRASQHISYQNALNTSAREKVRRYKAAAEERRATFCPLIVTVEGIAHQSMQAFLRRIAAR 425          
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Match: A0A6A4J8J5_APOLU (Uncharacterized protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4J8J5_APOLU)

HSP 1 Score: 63.9 bits (154), Expect = 6.370e-11
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   10 GVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGVAHASFQAFLRRV 246
            GVW+R R    FD RI++A +P   S+   +SS+ ++ AR K  KY  AAE+ R +F PL+ + +GV H  F  FL R+
Sbjct:   61 GVWDRERV-AFFDNRIINADAPSYLSQ--DWSSIADTAAREKHQKYDGAAEDHRGSFSPLVSSCEGVLHREFDQFLHRL 136          
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Match: A0A0A9YN96_LYGHE (Cysteine--tRNA ligase (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YN96_LYGHE)

HSP 1 Score: 62.0 bits (149), Expect = 1.840e-10
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   10 GVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGVAHASFQAFLRRVS 249
            G+W+R R     D RI+++ +P   S+G  ++++ N  AR K  KY  AAE  RA+F PL+ + +GV HA F AF +R++
Sbjct:   33 GLWDRERT-AFLDNRIINSDAPSYLSQG--WTTIANRAAREKHIKYDRAAEALRASFTPLVCSCEGVLHAEFTAFQKRLT 109          
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Match: A0A0G4H0M0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H0M0_VITBC)

HSP 1 Score: 58.5 bits (140), Expect = 4.370e-8
Identity = 30/68 (44.12%), Postives = 37/68 (54.41%), Query Frame = 1
Query:    7 RGVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGV 210
            RGVWER      FD  I  A +P  AS+  S  S+L      K  KY+ A  + R TFCPL++T DGV
Sbjct:  418 RGVWERQAA-ASFDIYITDADAPSYASKNRSTKSILRQHETAKKKKYRSAVCDSRVTFCPLVVTCDGV 484          
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Match: A0A0G4H5K6_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H5K6_VITBC)

HSP 1 Score: 57.0 bits (136), Expect = 1.520e-7
Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 1
Query:    7 RGVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGV 210
            RGVW+R     LFD  I    +P  AS+  S +S+L      K  KY  A  + R TFCPL++T DGV
Sbjct:  419 RGVWDRQAA-ALFDICITDVDAPSYASKNRSTNSILKQHETAKKKKYHSAVCDSRVTFCPLVVTCDGV 485          
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Match: A0A0G4E8V1_VITBC (Uncharacterized protein (Fragment) n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4E8V1_VITBC)

HSP 1 Score: 56.6 bits (135), Expect = 2.130e-7
Identity = 29/68 (42.65%), Postives = 36/68 (52.94%), Query Frame = 1
Query:    7 RGVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGV 210
            RGVWER      FD  I    +P  AS+  S  S+L      K  KY+ A  + R TFCPL++T DGV
Sbjct:  781 RGVWERQAA-ASFDICITDVDAPSYASKNRSTKSILKQHETAKKKKYRSAVCDSRVTFCPLVVTCDGV 847          
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Match: A0A0G4H273_VITBC (Uncharacterized protein (Fragment) n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H273_VITBC)

HSP 1 Score: 55.5 bits (132), Expect = 4.560e-7
Identity = 29/68 (42.65%), Postives = 35/68 (51.47%), Query Frame = 1
Query:    7 RGVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGV 210
            RGVWER      FD  I    +P  AS+  S  S+L      K  KY  A  + R TFCPL++T DGV
Sbjct:  143 RGVWERQAA-ASFDICITDVDAPSYASKNRSTKSILKQHETAKKKKYHSAVCDSRVTFCPLVVTCDGV 209          
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Match: A0A0G4FW90_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FW90_VITBC)

HSP 1 Score: 55.5 bits (132), Expect = 4.680e-7
Identity = 29/68 (42.65%), Postives = 35/68 (51.47%), Query Frame = 1
Query:    7 RGVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGV 210
            RGVWER      FD  I    +P  AS+  S  S+L      K  KY  A  + R TFCPL++T DGV
Sbjct:  240 RGVWERQAA-ASFDICITDVDAPSYASKNRSIKSILKQHETAKKKKYHSAICDSRVTFCPLVVTCDGV 306          
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Match: A0A0G4GTX7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GTX7_VITBC)

HSP 1 Score: 53.5 bits (127), Expect = 2.610e-6
Identity = 28/68 (41.18%), Postives = 34/68 (50.00%), Query Frame = 1
Query:    7 RGVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYKVAAEERRATFCPLIITVDGV 210
            RGVWER      FD  I    +P  AS+  S  S+L      K  KY     + R TFCPL++T DGV
Sbjct:  927 RGVWERQAA-ASFDICITDVDAPSYASKNRSIKSILKQHETAKKKKYHSTVCDSRVTFCPLMVTCDGV 993          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1034.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A7S3Y8R9_HETAK1.330e-4598.82Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8Q7_HETAK6.990e-3371.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6A4J8J5_APOLU6.370e-1141.77Uncharacterized protein n=1 Tax=Apolygus lucorum T... [more]
A0A0A9YN96_LYGHE1.840e-1040.00Cysteine--tRNA ligase (Fragment) n=1 Tax=Lygus hes... [more]
A0A0G4H0M0_VITBC4.370e-844.12Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4H5K6_VITBC1.520e-742.65Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4E8V1_VITBC2.130e-742.65Uncharacterized protein (Fragment) n=1 Tax=Vitrell... [more]
A0A0G4H273_VITBC4.560e-742.65Uncharacterized protein (Fragment) n=1 Tax=Vitrell... [more]
A0A0G4FW90_VITBC4.680e-742.65Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4GTX7_VITBC2.610e-641.18Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1034contigH-akashiwo_Contig1034:181158..181414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15715522
PFAMsRVT_1
Model size258
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.14e-07
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387058.4896169-CDS-H-akashiwo_Contig1034:181157..1814121681387058.4896169-CDS-H-akashiwo_Contig1034:181157..181412Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1034 181158..181412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1034.9.1prot_H-akashiwo_Contig1034.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1034 181158..181412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1034.9.1

>prot_H-akashiwo_Contig1034.9.1 ID=prot_H-akashiwo_Contig1034.9.1|Name=mRNA_H-akashiwo_Contig1034.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=85bp
ATRGVWERSREDCLFDTRIVHAGSPGRASRGISYSSVLNSQARLKINKYK
VAAEERRATFCPLIITVDGVAHASFQAFLRRVSAQ
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mRNA from alignment at H-akashiwo_Contig1034:181158..181414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1034.9.1 ID=mRNA_H-akashiwo_Contig1034.9.1|Name=mRNA_H-akashiwo_Contig1034.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=257bp|location=Sequence derived from alignment at H-akashiwo_Contig1034:181158..181414+ (Heterosigma akashiwo CCMP452)
GCAACTAGGGGTGTGTGGGAGCGTAGCCGGGAGGATTGCCTTTTCGATAC CCGCATTGTACATGCTGGTAGTCCTGGTCGTGCTTCTCGCGGCATCTCTT ACAGCAGTGTCCTCAACAGCCAGGCGCGACTGAAGATAAACAAGTACAAG GTGGCCGCGGAGGAGCGGCGGGCTACCTTCTGCCCCCTCATCATCACTGT TGATGGAGTTGCCCATGCTTCCTTCCAGGCTTTCTTGAGGCGTGTGTCTG CGCAGCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1034:181158..181414+

>mRNA_H-akashiwo_Contig1034.9.1 ID=mRNA_H-akashiwo_Contig1034.9.1|Name=mRNA_H-akashiwo_Contig1034.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=255bp|location=Sequence derived from alignment at H-akashiwo_Contig1034:181158..181414+ (Heterosigma akashiwo CCMP452)
GCAACTAGGGGTGTGTGGGAGCGTAGCCGGGAGGATTGCCTTTTCGATAC
CCGCATTGTACATGCTGGTAGTCCTGGTCGTGCTTCTCGCGGCATCTCTT
ACAGCAGTGTCCTCAACAGCCAGGCGCGACTGAAGATAAACAAGTACAAG
GTGGCCGCGGAGGAGCGGCGGGCTACCTTCTGCCCCCTCATCATCACTGT
TGATGGAGTTGCCCATGCTTCCTTCCAGGCTTTCTTGAGGCGTGTGTCTG
CGCAG
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