mRNA_H-akashiwo_Contig1023.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1023.7.1
Unique NamemRNA_H-akashiwo_Contig1023.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1023.7.1 vs. uniprot
Match: A0A8J1VYZ7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1VYZ7_9DINO)

HSP 1 Score: 296 bits (759), Expect = 6.510e-96
Identity = 139/261 (53.26%), Postives = 174/261 (66.67%), Query Frame = 1 
Query:    7 AWSDPWVVVFATVLFFSLVRCIFGGAPYLPSRAWYALCMFIPFPFVAVGAGLGVQCVPISFDWQVVFHITMVFLYCQIDLTIGERMIKRKYGP-------------------------DVQF-SANILKFLLENFHPTKCRSPMDAGSPALVRAIFEFNGALLHEVFWNVSICQNFINNGYEPALAILMVPTLSSVVHGLTCNWVQGYRCFPQFLWVALSYHASQ-NVLVPGLVHALWYFSDGNLLVLLSLFKRDWDAAAR 708
            AWS P  V  AT++FF+ VR + GGAPYL SRAWYA C+ +PFPF+ +G GLG  CVP+ FD     H+ +V LYCQIDL +   ++ R +                             QF S N++K +LEN HP + R+P+D GSPAL+R  FEFNGALLHEVFWNV ICQNF+N+ Y P LAI +VP LS VVHG+ CNWV GYRCFPQFLWV L+YHAS  +VL+PGL+HA WYF DG LL ++++FK +WD   R
Sbjct:   38 AWSGPIPVTVATIVFFAYVRFVLGGAPYLCSRAWYAFCLLVPFPFLFLGIGLGGICVPLDFDIPTAVHLGLVLLYCQIDLLVSRFLVLRDFASRPSGATADGQESTNAELLRPSREHVSAQFGSINVVKIMLENLHPLRSRTPLDLGSPALLRGCFEFNGALLHEVFWNVFICQNFLNHKYPPYLAIALVPVLSCVVHGIVCNWVSGYRCFPQFLWVVLAYHASGGSVLIPGLIHACWYFMDGRLLCVINIFKAEWDLENR 298
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BLAST of mRNA_H-akashiwo_Contig1023.7.1 vs. uniprot
Match: A0A813H6A9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H6A9_POLGL)

HSP 1 Score: 197 bits (500), Expect = 9.190e-58
Identity = 99/233 (42.49%), Postives = 128/233 (54.94%), Query Frame = 1 
Query:   10 WSDPWVVVFATVLFFSLVRCIFGGAPYLPSRAWYALCMFIPFPFVAVGAGLGVQCVPISFDWQVVFHITMVFLYCQIDLTIGERMIKRKYGPDVQFSANILKFLLENFHPTKCRSPMDAGSPALVRAIFEFNGALLHEVFWNVSICQNFINNGYEPALAILMVPTLSSVVHGLTCNWVQGYRCFPQFLWVALSYHASQNVLVPGLVHALWYFSDGNLLVLLSLFKRDWDAAAR 708
            W  P  +V   ++ F  +R   GGA YLPSRAWY LC  IP  FV  G      CVPI  DWQ + H+    +Y Q+DL +  R++         +S   L     +  P +       G   + R++FE NGAL HE+FWN+ ICQN +N G    +A+L VP  S +VHG+  N   G RC P FLWVALS+HAS +VL P L+HA+WYF +  L   L   KRDWD A R
Sbjct:   22 WLHPAAIVGLCLVVFVPLRLCLGGANYLPSRAWYLLCFIIP-AFVLAGLASSAFCVPIQADWQTLLHLMAALVYMQLDLCVA-RLLCSPSSSCADWSLPQLVLSKLSCRPARLDGLSPPGLLPVARSLFELNGALFHEIFWNIFICQNCLNRGLPLPVALLAVPAASCLVHGIVSNINTGVRCLPNFLWVALSFHASGSVLPPALIHAMWYFLEAKLCFSLKTLKRDWDFAER 252
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BLAST of mRNA_H-akashiwo_Contig1023.7.1 vs. uniprot
Match: A0A813JA33_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JA33_POLGL)

HSP 1 Score: 198 bits (504), Expect = 1.400e-55
Identity = 99/233 (42.49%), Postives = 128/233 (54.94%), Query Frame = 1 
Query:   10 WSDPWVVVFATVLFFSLVRCIFGGAPYLPSRAWYALCMFIPFPFVAVGAGLGVQCVPISFDWQVVFHITMVFLYCQIDLTIGERMIKRKYGPDVQFSANILKFLLENFHPTKCRSPMDAGSPALVRAIFEFNGALLHEVFWNVSICQNFINNGYEPALAILMVPTLSSVVHGLTCNWVQGYRCFPQFLWVALSYHASQNVLVPGLVHALWYFSDGNLLVLLSLFKRDWDAAAR 708
            W  P  +V   ++ F  +R   GGA YLPSRAWY LC  IP  FV  G      CVPI  DWQ + H+    +Y Q+DL +  R++         +S   L     +  P +       G   + R++FE NGAL HE+FWN+ ICQN +N G    +A+L VP  S +VHG+  N   G RC P FLWVALS+HAS +VL P L+HA+WYF +  L   L   KRDWD A R
Sbjct:  210 WLHPAAIVGLCLVVFVPLRLCLGGANYLPSRAWYLLCFIIP-AFVLAGLASSAFCVPIQADWQTLLHLVAALVYMQLDLCVA-RLLSSPSSSCADWSLPQLVLSKLSCRPARLDGLSPPGLLPVARSLFELNGALFHEIFWNIFICQNCLNRGLPLPVALLAVPAASCLVHGIVSNINTGVRCLPNFLWVALSFHASGSVLPPALIHAMWYFLEAKLCFSLKTLKRDWDFAER 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1023.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8J1VYZ7_9DINO6.510e-9653.26Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A813H6A9_POLGL9.190e-5842.49Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813JA33_POLGL1.400e-5542.49Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1023contigH-akashiwo_Contig1023:78484..79194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size713
Hectar predicted targeting categorysignal peptide
Exons1
Cds size711
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387054.6231363-CDS-H-akashiwo_Contig1023:78483..791941681387054.6231363-CDS-H-akashiwo_Contig1023:78483..79194Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1023 78484..79194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1023.7.1prot_H-akashiwo_Contig1023.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1023 78484..79194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1023.7.1

>prot_H-akashiwo_Contig1023.7.1 ID=prot_H-akashiwo_Contig1023.7.1|Name=mRNA_H-akashiwo_Contig1023.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=237bp
MLAWSDPWVVVFATVLFFSLVRCIFGGAPYLPSRAWYALCMFIPFPFVAV
GAGLGVQCVPISFDWQVVFHITMVFLYCQIDLTIGERMIKRKYGPDVQFS
ANILKFLLENFHPTKCRSPMDAGSPALVRAIFEFNGALLHEVFWNVSICQ
NFINNGYEPALAILMVPTLSSVVHGLTCNWVQGYRCFPQFLWVALSYHAS
QNVLVPGLVHALWYFSDGNLLVLLSLFKRDWDAAARA
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mRNA from alignment at H-akashiwo_Contig1023:78484..79194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1023.7.1 ID=mRNA_H-akashiwo_Contig1023.7.1|Name=mRNA_H-akashiwo_Contig1023.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=711bp|location=Sequence derived from alignment at H-akashiwo_Contig1023:78484..79194+ (Heterosigma akashiwo CCMP452)
ATGCTTGCCTGGTCTGATCCGTGGGTTGTGGTCTTCGCCACCGTGTTGTT
CTTCTCATTAGTGAGATGCATCTTTGGTGGTGCCCCGTACTTGCCAAGTA
GAGCTTGGTATGCTCTTTGCATGTTCATCCCATTCCCGTTCGTGGCAGTT
GGTGCTGGTTTGGGAGTTCAGTGTGTGCCAATAAGTTTTGACTGGCAAGT
TGTCTTTCACATTACAATGGTTTTTTTGTACTGTCAGATCGATTTGACGA
TTGGGGAACGAATGATAAAGCGAAAGTACGGACCTGATGTCCAATTTTCA
GCGAATATACTAAAGTTTCTTTTGGAAAACTTCCACCCTACAAAATGTCG
GAGCCCCATGGATGCAGGTTCTCCGGCCCTTGTGCGTGCCATTTTTGAAT
TCAATGGTGCCTTATTACATGAAGTGTTTTGGAATGTTTCCATTTGCCAA
AACTTCATCAACAATGGGTACGAGCCAGCCTTGGCTATTTTGATGGTCCC
TACTCTGAGTTCGGTCGTCCACGGTTTAACCTGCAACTGGGTTCAAGGCT
ACAGGTGCTTCCCCCAGTTCCTCTGGGTAGCCCTGTCCTACCATGCCTCC
CAGAACGTGCTCGTCCCCGGGCTCGTTCACGCCCTCTGGTACTTCTCCGA
CGGGAACCTCCTGGTCCTCCTGTCGCTCTTCAAGCGCGACTGGGACGCCG
CGGCCCGCGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1023:78484..79194+

>mRNA_H-akashiwo_Contig1023.7.1 ID=mRNA_H-akashiwo_Contig1023.7.1|Name=mRNA_H-akashiwo_Contig1023.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=711bp|location=Sequence derived from alignment at H-akashiwo_Contig1023:78484..79194+ (Heterosigma akashiwo CCMP452)
ATGCTTGCCTGGTCTGATCCGTGGGTTGTGGTCTTCGCCACCGTGTTGTT
CTTCTCATTAGTGAGATGCATCTTTGGTGGTGCCCCGTACTTGCCAAGTA
GAGCTTGGTATGCTCTTTGCATGTTCATCCCATTCCCGTTCGTGGCAGTT
GGTGCTGGTTTGGGAGTTCAGTGTGTGCCAATAAGTTTTGACTGGCAAGT
TGTCTTTCACATTACAATGGTTTTTTTGTACTGTCAGATCGATTTGACGA
TTGGGGAACGAATGATAAAGCGAAAGTACGGACCTGATGTCCAATTTTCA
GCGAATATACTAAAGTTTCTTTTGGAAAACTTCCACCCTACAAAATGTCG
GAGCCCCATGGATGCAGGTTCTCCGGCCCTTGTGCGTGCCATTTTTGAAT
TCAATGGTGCCTTATTACATGAAGTGTTTTGGAATGTTTCCATTTGCCAA
AACTTCATCAACAATGGGTACGAGCCAGCCTTGGCTATTTTGATGGTCCC
TACTCTGAGTTCGGTCGTCCACGGTTTAACCTGCAACTGGGTTCAAGGCT
ACAGGTGCTTCCCCCAGTTCCTCTGGGTAGCCCTGTCCTACCATGCCTCC
CAGAACGTGCTCGTCCCCGGGCTCGTTCACGCCCTCTGGTACTTCTCCGA
CGGGAACCTCCTGGTCCTCCTGTCGCTCTTCAAGCGCGACTGGGACGCCG
CGGCCCGCGCC
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