mRNA_H-akashiwo_Contig1023.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1023.5.1
Unique NamemRNA_H-akashiwo_Contig1023.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Match: A0A7S3Y6Q9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6Q9_HETAK)

HSP 1 Score: 233 bits (594), Expect = 9.300e-75
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1
Query:    1 FFGIFYELLFEADPSIEILFKNTSLKKQGKMLMQTFRFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWLVSLSHVYSILIPAVVDAT 354
            FFGIFYELLFEADPSIEILFKNT+LKKQGKMLMQTFRFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWLVSLSHVYSILIPAVVDAT
Sbjct:   74 FFGIFYELLFEADPSIEILFKNTNLKKQGKMLMQTFRFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWLVSLSHVYSILIPAVVDAT 191          
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Match: A0A8G1GRK0_9NEIS (Hemin receptor n=1 Tax=Deefgea sp. D25 TaxID=2865840 RepID=A0A8G1GRK0_9NEIS)

HSP 1 Score: 64.7 bits (156), Expect = 7.430e-11
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    7 GIFYELLFEADPSIEILFKNTSLKKQGKMLMQTFRFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWLVS 306
             IFY+ LFE DPS+  LFK+  + +QGKMLM T + VA +   D  K+   L  LA RH   YGV P +Y    +++ RT +  LG EF++E   AW+ +
Sbjct:   27 AIFYQKLFEIDPSLRRLFKH-DMSEQGKMLMGTLK-VAVNGLNDLSKIVPVLHKLAERHVG-YGVLPEHYTLVGNALLRTLKAGLGDEFTEETREAWVAT 123          
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Match: V4HJT2_9GAMM (Hemoglobin-like flavoprotein n=2 Tax=Pseudoalteromonas luteoviolacea TaxID=43657 RepID=V4HJT2_9GAMM)

HSP 1 Score: 61.6 bits (148), Expect = 1.250e-9
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   10 IFYELLFEADPSIEILFKNTSLKKQGKMLMQTFRFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWL 300
            IFY  LFE DPS++ LFKN S+K QG+ LM T + VA +   D   L   L+ LA RH N YGV P ++    +++  T ++ LG +++ E   AW+
Sbjct:   28 IFYTTLFEYDPSLKSLFKN-SMKSQGQKLMATLK-VAVNSLDDLDALVPVLQKLAERHVN-YGVKPEHFTLVGNALLYTLKKGLGSDWNSELRQAWI 121          
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Match: W4LBL3_9BACT (GLOBIN domain-containing protein n=2 Tax=Candidatus Entotheonella TaxID=93171 RepID=W4LBL3_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 4.340e-9
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 1
Query:   10 IFYELLFEADPSIEILFKNTSLKKQGKMLMQTFRFVAES-HKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWLVSLSHVYSILIPAVVDAT 354
            +FY+ LFE DPSI+ LF +T +K+Q K LMQT   V    ++LD  K+  A++ L  RH + YGV   +Y+    ++  T ++ LG  F+ E E AW V+ + +   +  A  + T
Sbjct:   57 LFYDKLFELDPSIKPLFAHTEMKEQQKKLMQTMTVVVNGLNRLD--KMVPAVQALGKRHID-YGVQADHYSTVGAALLWTLQQGLGEAFTPEVEEAWSVTYTVLAGTMQGAAAEVT 169          
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Match: A0A167GSE3_9GAMM (GLOBIN domain-containing protein n=2 Tax=Pseudoalteromonas luteoviolacea TaxID=43657 RepID=A0A167GSE3_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 6.890e-9
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   10 IFYELLFEADPSIEILFKNTSLKKQGKMLMQTFRFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWL 300
            IFY  LFE DPS++ LFKN S+K QG+ LM T + VA +   D   L   L  LA RH   YGV   ++ Y  +++  T ++ LG E++ E   AW+
Sbjct:   28 IFYTTLFEYDPSLKALFKN-SIKSQGQKLMATLK-VAVNSLDDLDALVPVLHKLAERHVG-YGVRAEHFTYVGNALLYTLKKGLGNEWNPELRQAWI 121          
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Match: UPI001C23ACC4 (globin domain-containing protein n=1 Tax=Roseomonas oleicola TaxID=2801474 RepID=UPI001C23ACC4)

HSP 1 Score: 58.9 bits (141), Expect = 1.530e-8
Identity = 39/114 (34.21%), Postives = 56/114 (49.12%), Query Frame = 1
Query:    7 GIFYELLFEADPSIEILFKNTSLKKQGKMLMQTFRFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWLVSLSHVYSILIPAVVD 348
             IFY  LFE DP++  LF++T +  QG+ LMQ   FV  +H     +L  A+  L  RH   YGV P +Y     ++  T    LG  F+ E   AW  +   +  ++I A  D
Sbjct:   25 AIFYRRLFERDPALRPLFRDTDMAVQGRKLMQAIGFVV-AHLRVPDRLLPAVSALGARHAG-YGVQPAHYDTVGAALLDTLEEGLGEAFTPEVREAWAAAYGLLAQVMITAAND 136          
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Match: A0A0F6ADV7_9GAMM (GLOBIN domain-containing protein n=3 Tax=Pseudoalteromonas luteoviolacea TaxID=43657 RepID=A0A0F6ADV7_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 1.920e-8
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   10 IFYELLFEADPSIEILFKNTSLKKQGKMLMQTFRFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWL 300
            IFY  LFE DPS++ LFKN S+K QG+ LM T +    S   D   L   L  LA RH   YGV   ++ +  +++  T ++ LG E+++E   AW+
Sbjct:   28 IFYTTLFEYDPSLKRLFKN-SIKSQGQKLMATLKIAVNSLD-DLDGLVPVLHKLAERHVG-YGVKAQHFTFVGNALLYTLKKGLGSEWNQELREAWI 121          
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Match: UPI00146AEF4F (globin domain-containing protein n=1 Tax=Sneathiella limimaris TaxID=1964213 RepID=UPI00146AEF4F)

HSP 1 Score: 56.6 bits (135), Expect = 1.580e-7
Identity = 37/107 (34.58%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   10 IFYELLFEADPSIEILFKNTSLKKQGKMLMQTFRFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWLVSLSHVYSIL 330
            +FY  LFE DPS++ LFK  ++K+QGK LM T      S K + +K+R  +E L   H + YGV   +Y   A+++  T  + LG  F+++ + AW+ + + + +I+
Sbjct:   26 LFYNRLFELDPSLKPLFKG-NMKEQGKKLMATIGVAVSSLK-NLEKIRPTVEALGKSHKD-YGVQDRHYDTVAEALIWTLGKGLGDAFTEDVKAAWVETYTTLATIM 129          
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Match: A0A7S8IGN0_9CHLR (Hemin receptor n=1 Tax=Phototrophicus methaneseepsis TaxID=2710758 RepID=A0A7S8IGN0_9CHLR)

HSP 1 Score: 54.7 bits (130), Expect = 6.050e-7
Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 1
Query:   10 IFYELLFEADPSIEILFKNTSLKKQGKMLMQTFRFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWLVSLSHVYSILIPAVVDA 351
            +FY+ LFE  P  + LF NT ++ QG  L++    VA         L   L  L  RH N YGV    Y    +++  T R +LG EF+KE + AWL     VYS+++  ++DA
Sbjct:   31 LFYDRLFELAPQTKALFVNTEIEAQGDKLVRMIG-VAVGALSQPDALIPVLVGLGERHLN-YGVTDEMYNPGGEALIWTLRYVLGAEFTKEVQEAWL----SVYSLMVQVILDA 138          
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Match: A0A3N0V168_9PROT (Hemin receptor n=1 Tax=Pseudomethylobacillus aquaticus TaxID=2676064 RepID=A0A3N0V168_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 8.180e-7
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    7 GIFYELLFEADPSIEILFKNTSLKKQGKMLMQTF-RFVAESHKLDQQKLRHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWLVSLSHVYSIL 330
             +FY+ LFEADPS++ LFK   +  QGK LM      V + ++LD   L   L+ L  RH  +YGV  ++Y     ++ +T ++ LGP F+ E   AW    + VY ++
Sbjct:   25 ALFYQNLFEADPSLKTLFKG-DMTAQGKKLMHMIGAAVGKLNELD--TLVPILQQLGARHV-AYGVEDVHYQTVGGALLKTLQQGLGPAFTPEVNAAW----AEVYGVM 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1023.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y6Q9_HETAK9.300e-7599.15Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A8G1GRK0_9NEIS7.430e-1142.00Hemin receptor n=1 Tax=Deefgea sp. D25 TaxID=28658... [more]
V4HJT2_9GAMM1.250e-941.24Hemoglobin-like flavoprotein n=2 Tax=Pseudoalterom... [more]
W4LBL3_9BACT4.340e-936.21GLOBIN domain-containing protein n=2 Tax=Candidatu... [more]
A0A167GSE3_9GAMM6.890e-941.24GLOBIN domain-containing protein n=2 Tax=Pseudoalt... [more]
UPI001C23ACC41.530e-834.21globin domain-containing protein n=1 Tax=Roseomona... [more]
A0A0F6ADV7_9GAMM1.920e-839.18GLOBIN domain-containing protein n=3 Tax=Pseudoalt... [more]
UPI00146AEF4F1.580e-734.58globin domain-containing protein n=1 Tax=Sneathiel... [more]
A0A7S8IGN0_9CHLR6.050e-735.96Hemin receptor n=1 Tax=Phototrophicus methaneseeps... [more]
A0A3N0V168_9PROT8.180e-735.78Hemin receptor n=1 Tax=Pseudomethylobacillus aquat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1023contigH-akashiwo_Contig1023:53646..53999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog111781.Lepto7376_2918
PFAMsGlobin,Pentapeptide
Model size354
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.47e-07
EggNOG OGsCOG1017@1|root,COG1017@2|Bacteria,1G3MG@1117|Cyanobacteria,1H9R2@1150|Oscillatoriales
DescriptionBelongs to the globin family
Cds size354
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387054.5891287-CDS-H-akashiwo_Contig1023:53645..539991681387054.5891287-CDS-H-akashiwo_Contig1023:53645..53999Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1023 53646..53999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1023.5.1prot_H-akashiwo_Contig1023.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1023 53646..53999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1023.5.1

>prot_H-akashiwo_Contig1023.5.1 ID=prot_H-akashiwo_Contig1023.5.1|Name=mRNA_H-akashiwo_Contig1023.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=118bp
FFGIFYELLFEADPSIEILFKNTSLKKQGKMLMQTFRFVAESHKLDQQKL
RHALEMLANRHTNSYGVHPMYYAYFADSMNRTFRRLLGPEFSKEYEFAWL
VSLSHVYSILIPAVVDAT
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mRNA from alignment at H-akashiwo_Contig1023:53646..53999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1023.5.1 ID=mRNA_H-akashiwo_Contig1023.5.1|Name=mRNA_H-akashiwo_Contig1023.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig1023:53646..53999+ (Heterosigma akashiwo CCMP452)
TTCTTTGGGATTTTCTATGAGCTTCTCTTTGAGGCAGACCCAAGTATTGA AATTCTATTCAAAAATACAAGTCTTAAGAAACAAGGAAAGATGCTTATGC AAACCTTTAGGTTTGTGGCCGAATCTCACAAGCTAGACCAACAGAAGCTT CGCCACGCACTGGAGATGCTTGCCAATAGGCACACTAACAGCTATGGAGT GCACCCAATGTACTATGCTTATTTTGCCGACTCAATGAACCGAACTTTCC GCCGACTTCTGGGCCCTGAGTTTTCAAAGGAATATGAGTTTGCATGGCTG GTGTCCCTCTCGCATGTGTATTCTATTTTAATACCTGCAGTTGTTGATGC TACA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1023:53646..53999+

>mRNA_H-akashiwo_Contig1023.5.1 ID=mRNA_H-akashiwo_Contig1023.5.1|Name=mRNA_H-akashiwo_Contig1023.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig1023:53646..53999+ (Heterosigma akashiwo CCMP452)
TTCTTTGGGATTTTCTATGAGCTTCTCTTTGAGGCAGACCCAAGTATTGA
AATTCTATTCAAAAATACAAGTCTTAAGAAACAAGGAAAGATGCTTATGC
AAACCTTTAGGTTTGTGGCCGAATCTCACAAGCTAGACCAACAGAAGCTT
CGCCACGCACTGGAGATGCTTGCCAATAGGCACACTAACAGCTATGGAGT
GCACCCAATGTACTATGCTTATTTTGCCGACTCAATGAACCGAACTTTCC
GCCGACTTCTGGGCCCTGAGTTTTCAAAGGAATATGAGTTTGCATGGCTG
GTGTCCCTCTCGCATGTGTATTCTATTTTAATACCTGCAGTTGTTGATGC
TACA
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