mRNA_H-akashiwo_Contig1023.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1023.4.1
Unique NamemRNA_H-akashiwo_Contig1023.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Match: A0A151IS59_9HYME (GIY-YIG domain-containing protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151IS59_9HYME)

HSP 1 Score: 96.3 bits (238), Expect = 1.400e-21
Identity = 55/165 (33.33%), Postives = 87/165 (52.73%), Query Frame = 1
Query:    1 DGEEVEECGTLVVPFIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYIAMVENTCNIQKGRDF 495
            D +++E      +P+ + +    R +   L++ L +     L   + P++     +QQKNV+YKI+CK C+ SYVGQTKRTL TRVKEH   +  +  +L V         L  H L+   +H FD+D+ +V+  E    KR   E ++I +  N+ N+Q   DF
Sbjct:   37 DKDDMEIKTWFTIPYTEGIDGKFREVVRDLDVNLSFYSLNKLNCFIGPQKDRLSNLQQKNVIYKINCKDCDASYVGQTKRTLKTRVKEHKNDIRKSNGNLSV---------LSEHRLE--LNHEFDWDDVKVVDSERWLYKRRISEMLHIKLQNNSLNLQSDTDF 190          
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Match: A0A151JBS6_9HYME (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151JBS6_9HYME)

HSP 1 Score: 92.4 bits (228), Expect = 4.060e-20
Identity = 52/153 (33.99%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   34 VVPFIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYIAMVENTCNIQKGRD 492
            V+P++ ++    + +    N KL Y     L +L+   +      ++KNVVYKISCK CE SYVGQTKR L TR+ EH            ++R   N + +  H ++  F H FD++N  VL  E    KRL  E ++I M +N+ N++   +
Sbjct:   47 VLPYVPKISDEFKRISKTFNTKLAYTSLNKLNSLIKGHKDILPKEKRKNVVYKISCKSCEASYVGQTKRKLKTRLAEHRN---------HINRNSNNQSVITEHRIE--FDHDFDWENVAVLDEERSLNKRLISECLHILMQKNSLNLRSDTE 188          
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Match: A0A151IRX3_9HYME (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151IRX3_9HYME)

HSP 1 Score: 90.9 bits (224), Expect = 5.430e-20
Identity = 56/167 (33.53%), Postives = 81/167 (48.50%), Query Frame = 1
Query:   34 VVPFIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYIAMVENTCNIQKGRDFNP-IWLPLLRHFS 531
            + P++K L      +    NL + YK   +L   +   +     M   NVVYKISC  C+ SYVGQTKR L TR+KEH   +          RK  N + +  H L+  + H+ D DN  +L  E  + K+   E ++I    N  N Q   D  P I+LP+++ FS
Sbjct:    2 IAPYVKNLTEKFHNVYRNYNLNIAYKSVNSLNKFIKTGKDRLDKMNNNNVVYKISCCDCDCSYVGQTKRKLKTRIKEHKSDI----------RKSNNHSVVSLHQLE--YGHQIDLDNINILDSEHSFYKKSISEMIHIKKQGNGINNQNDTDKLPNIYLPIIQSFS 156          
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Match: A0A151JCH7_9HYME (GIY-YIG domain-containing protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151JCH7_9HYME)

HSP 1 Score: 92.4 bits (228), Expect = 1.970e-19
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query:    1 DGEEVEECGTLVVPFIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYIAMVENTCNIQKGRDF 495
            D +++E      + + + +    R +   L++ L +     L   + P++     +QQKNV+YKI+CK C+ SYVGQTKRTL TRVKEH   +  +  +L V         L  H L+   +H FD+D+ +V+  E    KR   E ++I +  N+ N+Q   DF
Sbjct:  117 DKDDMEIKTWFTILYTEGIDGKFREVVRDLDVNLSFYSLNKLNCFIGPQKDRLSNLQQKNVIYKINCKDCDASYVGQTKRTLKTRVKEHKNDIRKSNGNLSV---------LSEHRLE--LNHEFDWDDVKVVDSERWLYKRRISEMLHIKLQNNSLNLQSDTDF 270          
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Match: A0A151JLZ4_9HYME (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151JLZ4_9HYME)

HSP 1 Score: 92.0 bits (227), Expect = 2.450e-19
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = 1
Query:    1 DGEEVEECGTLVVPFIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYIAMVENTCNIQKGRDF 495
            D  E++ C T  +P+ + +    R +   LN+   +     L   + P++     +Q+KNV+YKI+C+ C+ SYVGQTKRTL T VKEH+  +  ++ +L V         L  H L+   +H FD+D+ EV+  E    +R   E ++I +  N  N+Q   DF
Sbjct:  112 DDIEIKTCFT--IPYTEGIDGKFREVVRDLNVNSSFYSLNKLNCFIRPQKDRLSNLQKKNVIYKINCRDCDASYVGQTKRTLKTSVKEHNNDIRKSEGNLSV---------LSEHHLE--LNHEFDWDDVEVVYSERWLYRRRITEMLHIKLQNNGLNLQSDTDF 263          
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Match: A0A151JX19_9HYME (GIY-YIG domain-containing protein n=2 Tax=Trachymyrmex septentrionalis TaxID=34720 RepID=A0A151JX19_9HYME)

HSP 1 Score: 90.5 bits (223), Expect = 2.710e-19
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 1
Query:    1 DGEEVEECGTLVVPFIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYIAMVENTCNIQKGRD-FNPIWLPLLR 522
            DGE  ++    ++PF+K+     + +  + NL+ +YK   +L   +   +          VVYKI CK+C  +YVGQTKR L TR+KEH   +     SL V    +   G           H  D++N E+L  E  + KR   E +YI M  +T N Q   D F  ++LPLL+
Sbjct:   46 DGELTKKTNYFIIPFLKKTSNKFKGILKKYNLQPVYKPLNSLNKFITLGKDKISKDDHSGVVYKIDCKECNHTYVGQTKRKLKTRLKEHINDIKKPVESLSVISNHRISDG-----------HVMDWNNTEILDFEQSFFKRSISEMIYIKMHTDTLNKQSDTDRFPDVYLPLLK 209          
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Match: A0A151IWB9_9HYME (GIY-YIG domain-containing protein (Fragment) n=2 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151IWB9_9HYME)

HSP 1 Score: 88.2 bits (217), Expect = 4.660e-19
Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   88 LNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYIAMVENTCNIQKGRDF 495
            L++ L +     L   + P++     +Q+KNV+YKI+CK C+ SYVGQTKRTL TRVKEH   +  +  +L V         L  H L+   +H FD+D+ +V+  E    KR   E ++I +  N+ N+Q   DF
Sbjct:    9 LDVNLSFYSFNKLNCFIGPQKDRLSNLQKKNVIYKINCKDCDASYVGQTKRTLKTRVKEHKNDIRKSNGNLSV---------LSEHRLE--LNHEFDWDDVKVVDSERWLYKRRISEMLHIKLQNNSLNLQSDTDF 133          
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Match: A0A026WU55_OOCBI (GIY-YIG domain-containing protein n=2 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026WU55_OOCBI)

HSP 1 Score: 89.4 bits (220), Expect = 5.060e-19
Identity = 57/167 (34.13%), Postives = 83/167 (49.70%), Query Frame = 1
Query:    1 DGEEVEECGTLVVPFIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYIAMVENTCNIQKGRDFNP 501
            DG        +V+P++K L   ++ +  R N+  +Y     L N++   +      QQ  VVY++SC + E  Y+GQTKR L TRVKEH  ++    + L V  K         H L+ D  H FD++N +VL RE H  KR  +E  +I    N  N+QK  D  P
Sbjct:   27 DGSVDNSRNFIVMPYVKGLSENVKRILNRCNVDFVYSVPKRLNNVIKLGKDVVANNQQMGVVYELSCVEYESVYIGQTKRHLETRVKEHKSNICKKNSCLSVVGK---------HRLEND--HNFDWNNCKVLHRENHRRKREIEEMFFIMRQCNAINLQKDTDDLP 182          
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Match: A0A195C461_9HYME (GIY-YIG domain-containing protein n=2 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A195C461_9HYME)

HSP 1 Score: 87.8 bits (216), Expect = 1.540e-18
Identity = 47/123 (38.21%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  124 LGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYIAMVENTCNIQKGRD 492
            L N++   + +T  MQ+ NVVYK+ C  C+ SYVGQTKR L TR+KEH  ++ +  T + V         L  HC  +   H FD+DN  ++  E+H+ KRL  E ++I    N  N QK  +
Sbjct:   52 LNNIIKVHKDNTEKMQRNNVVYKVECNNCDSSYVGQTKRKLITRIKEHKYNIRSNPTRVTV---------LSEHCNQS--GHSFDWDNIRIMDIESHYNKRLISEMLFIKEQNNGINAQKDTE 163          
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Match: A0A151J852_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151J852_9HYME)

HSP 1 Score: 88.2 bits (217), Expect = 2.650e-18
Identity = 52/175 (29.71%), Postives = 87/175 (49.71%), Query Frame = 1
Query:   10 EVEECGTLVVPFIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRRPSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSLFVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYIAMVENTCNIQKGRDF-NPIWLPLLRHFS 531
            E++     VVP+I  +      +    N++L +     L   +  ++     + ++NV+YKI+C  C+ SYVGQTKRTLATRVKEH   +     +L V         +  H L ++  H FD++  E++  E    KR   E ++I + +N  N+Q   D  +  ++P+L  F 
Sbjct:   59 ELDNKSWFVVPYINNITEKFIDIVKDCNVRLSFFSLNKLSCFIKTQKDHVASLMKRNVIYKINCNDCDASYVGQTKRTLATRVKEHKNDIRKIDGNLSV---------ISEHRLSSN--HEFDWEGVEIMDSERWMYKRRISEMLFIKLQKNGLNLQSDTDLLHNSYIPILEEFK 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1023.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151IS59_9HYME1.400e-2133.33GIY-YIG domain-containing protein n=1 Tax=Trachymy... [more]
A0A151JBS6_9HYME4.060e-2033.99GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A151IRX3_9HYME5.430e-2033.53GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A151JCH7_9HYME1.970e-1932.73GIY-YIG domain-containing protein n=1 Tax=Trachymy... [more]
A0A151JLZ4_9HYME2.450e-1932.73GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A151JX19_9HYME2.710e-1932.57GIY-YIG domain-containing protein n=2 Tax=Trachymy... [more]
A0A151IWB9_9HYME4.660e-1936.76GIY-YIG domain-containing protein (Fragment) n=2 T... [more]
A0A026WU55_OOCBI5.060e-1934.13GIY-YIG domain-containing protein n=2 Tax=Ooceraea... [more]
A0A195C461_9HYME1.540e-1838.21GIY-YIG domain-containing protein n=2 Tax=Cyphomyr... [more]
A0A151J852_9HYME2.650e-1829.71Uncharacterized protein (Fragment) n=1 Tax=Trachym... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1023contigH-akashiwo_Contig1023:20424..20957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog13037.EHJ63722
PFAMsRVT_1
Model size534
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.93e-11
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387054.5586202-CDS-H-akashiwo_Contig1023:20423..209571681387054.5586202-CDS-H-akashiwo_Contig1023:20423..20957Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1023 20424..20957 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1023.4.1prot_H-akashiwo_Contig1023.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1023 20424..20957 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1023.4.1

>prot_H-akashiwo_Contig1023.4.1 ID=prot_H-akashiwo_Contig1023.4.1|Name=mRNA_H-akashiwo_Contig1023.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=178bp
DGEEVEECGTLVVPFIKELQPALRALCTRLNLKLLYKRTVNLGNLLAPRR
PSTGGMQQKNVVYKISCKQCEVSYVGQTKRTLATRVKEHSRSVDAAKTSL
FVDRKGKNGTGLPAHCLDTDFSHRFDFDNAEVLCRETHWGKRLKKEAMYI
AMVENTCNIQKGRDFNPIWLPLLRHFS*
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mRNA from alignment at H-akashiwo_Contig1023:20424..20957+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1023.4.1 ID=mRNA_H-akashiwo_Contig1023.4.1|Name=mRNA_H-akashiwo_Contig1023.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=534bp|location=Sequence derived from alignment at H-akashiwo_Contig1023:20424..20957+ (Heterosigma akashiwo CCMP452)
GACgGGGAGGAGGTGGAGGAATGTGGCACTTTGGTGGTTCCTTTCATCAA GGAGTTGCAGCCGGCTCTCAGGGCGCTTTGTACTAGGCTGAATTTGAAGC TTCTTTACAAGAGAACGGTCAACTTGGGCAATTTGCTAGCTCCTAGAAGA CCGTCCACTGGTGGAATGCAGCAGAAGAATGTGGTCTACAAGATCTCTTG TAAGCAGTGTGAGGTTAGTTATGTTGGTCAGACCAAAAGAACACTAGCCA CAAGGGTGAAGGAGCATAGCCGGTCTGTAGATGCAGCCAAGACTTCCTTG TTTGTTGACAGAAAAGGAAAGAACGGCACAGGTTTGCCTGCTCACTGCTT GGACACTGATTTCTCTCATCGATTTGACTTTGACAATGCTGAGGTGCTGT GCAGAGAGACCCACTGGGGTAAGAGGTTGAAGAAGGAGGCCATGTACATT GCAATGGTGGAGAACACTTGCAACATCCAGAAGGGCAGAGATTTTAACCC TATTTGGCTCCCTCTGCTGCGGCATTTTTCATAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1023:20424..20957+

>mRNA_H-akashiwo_Contig1023.4.1 ID=mRNA_H-akashiwo_Contig1023.4.1|Name=mRNA_H-akashiwo_Contig1023.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=534bp|location=Sequence derived from alignment at H-akashiwo_Contig1023:20424..20957+ (Heterosigma akashiwo CCMP452)
GACgGGGAGGAGGTGGAGGAATGTGGCACTTTGGTGGTTCCTTTCATCAA
GGAGTTGCAGCCGGCTCTCAGGGCGCTTTGTACTAGGCTGAATTTGAAGC
TTCTTTACAAGAGAACGGTCAACTTGGGCAATTTGCTAGCTCCTAGAAGA
CCGTCCACTGGTGGAATGCAGCAGAAGAATGTGGTCTACAAGATCTCTTG
TAAGCAGTGTGAGGTTAGTTATGTTGGTCAGACCAAAAGAACACTAGCCA
CAAGGGTGAAGGAGCATAGCCGGTCTGTAGATGCAGCCAAGACTTCCTTG
TTTGTTGACAGAAAAGGAAAGAACGGCACAGGTTTGCCTGCTCACTGCTT
GGACACTGATTTCTCTCATCGATTTGACTTTGACAATGCTGAGGTGCTGT
GCAGAGAGACCCACTGGGGTAAGAGGTTGAAGAAGGAGGCCATGTACATT
GCAATGGTGGAGAACACTTGCAACATCCAGAAGGGCAGAGATTTTAACCC
TATTTGGCTCCCTCTGCTGCGGCATTTTTCATAA
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