mRNA_H-akashiwo_Contig1023.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1023.12.1
Unique NamemRNA_H-akashiwo_Contig1023.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Match: A0A6V1V4J2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V4J2_HETAK)

HSP 1 Score: 301 bits (772), Expect = 3.660e-100
Identity = 147/151 (97.35%), Postives = 150/151 (99.34%), Query Frame = 1
Query:    1 VKNYFELKKMLKGVKLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVN 453
            VKN FELKKMLKGV+LSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELL+ICLETHFKTIDG+IFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVN
Sbjct:  116 VKNSFELKKMLKGVRLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLEICLETHFKTIDGRIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVN 266          
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Match: A0A7S3XWS7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWS7_HETAK)

HSP 1 Score: 189 bits (480), Expect = 1.260e-59
Identity = 88/112 (78.57%), Postives = 100/112 (89.29%), Query Frame = 1
Query:  118 LEVVRQKLEEDETLPERTPWSPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVN 453
            +E+VRQKLEE+ETL +RTPWSPAQI+EL +ICLETHFKTI G+IF+Q  GTPIGKSISGPIAGIYLNWF+E+FIYS+RCK+KPTLW RMR     IWDHGEEKLQELL HVN
Sbjct:    1 MEIVRQKLEEEETLSQRTPWSPAQIIELWEICLETHFKTIYGRIFSQPGGTPIGKSISGPIAGIYLNWFDEEFIYSERCKNKPTLWKRMRG----IWDHGEEKLQELLGHVN 108          
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Match: A0A7S4DDA1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDA1_HETAK)

HSP 1 Score: 145 bits (366), Expect = 8.220e-38
Identity = 71/145 (48.97%), Postives = 101/145 (69.66%), Query Frame = 1
Query:    1 VKNYFELKKMLKGVKLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRC---KHKPTLWVRMRDDVFIIWDHGEEK 426
            +K+ + LK+ML  V L     L SFD+  +YPSIP + ALEV+ +KL++D TL +RT   P QI+ LL++C+ETHFK IDG I+TQ+DG PIGKSISG IAGIY+  +EE+ + +++    K +P  W R +DDV ++W  G E+
Sbjct:  180 IKDSYHLKEMLNEVVLEEGDCLGSFDIDCMYPSIPREAALEVIYRKLQKDRTLKDRTDLKPRQIITLLRVCMETHFKDIDGDIWTQTDGCPIGKSISGVIAGIYMADYEERHVLNNKQLPPKWRPKFWKRQKDDVIVVWPSGAEE 324          
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Match: A0A2J7QJN5_9NEOP (Reverse transcriptase domain-containing protein n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QJN5_9NEOP)

HSP 1 Score: 123 bits (308), Expect = 9.280e-30
Identity = 63/151 (41.72%), Postives = 92/151 (60.93%), Query Frame = 1
Query:    1 VKNYFELKKMLKGVKLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVN 453
            VKN     ++LK V L R+  L SFDV +L+ ++PV +AL+V+R +L  D TL ER+      I+ELL +CL T +   D   + Q DG  +G S+S  ++ IY+  FE+  I  D  + KP+LW+R  DD F+IW HG E +Q  L+H+N
Sbjct:  230 VKNSGHFIELLKSVNLRRHDMLASFDVVSLFTNVPVDEALQVIRSRLSNDNTLAERSVLKVEAIMELLDVCLRTTYFQGDDGFYQQKDGMAMGSSLSPVVSNIYMEHFEQLAI--DSAQDKPSLWLRYVDDTFVIWPHGAEGIQNFLTHLN 378          
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Match: A0A2J7PER2_9NEOP (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7PER2_9NEOP)

HSP 1 Score: 115 bits (287), Expect = 2.090e-28
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    1 VKNYFELKKMLKGVKLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEE 423
            VKN     ++LK V L R+  L SFDV +L+ ++PV +AL+V+R +L  D TL ER+      I+ELL +CL T +  +D   + Q DG  +G S+S  ++ IY+  FE+  I  D  + KP+LW+R  DD F+IW HG E
Sbjct:  151 VKNSGHFIELLKSVNLRRHDMLASFDVVSLFTNVPVDEALQVIRSRLSNDNTLAERSVLKVEAIMELLDVCLRTTYFQMDDGFYQQKDGMAMGSSLSPVVSNIYMEHFEQLAI--DSAQDKPSLWLRYVDDTFVIWPHGAE 289          
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Match: A0A1V4SZP3_9GAMM (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Oceanospirillum multiglobuliferum TaxID=64969 RepID=A0A1V4SZP3_9GAMM)

HSP 1 Score: 107 bits (267), Expect = 4.170e-27
Identity = 54/125 (43.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   31 LKGVKLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFII 405
            +K V L+   +LVSFDV AL+ SIP K+A++V+++KL++D TL ERT  +  QIVELL  CL+T + + D + + Q+ G  +G  +S  +A IY+  FE+Q + S    H P++W+R  DD F+I
Sbjct:    9 IKEVNLTPEQKLVSFDVSALFTSIPTKEAIKVIKEKLQQDPTLKERTNLNVDQIVELLMFCLDTTYFSFDEKFYKQTHGAAMGSPVSPIVANIYMESFEQQALSS--AIHTPSIWLRYVDDTFVI 131          
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Match: UPI001E274E29 (uncharacterized protein LOC123683035 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E274E29)

HSP 1 Score: 109 bits (272), Expect = 2.980e-25
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    1 VKNYFELKKMLKGVKLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVN 453
            VKN     + ++  ++     +VSFDV +L+ ++P  + LE+VR+KLEED+TL ERT  S   I+++L +C++T +  +D   + Q  G  +G  +S  +A IY+  FE + +  D+   KP LW R  DD F+IW HG+E +   L H+N
Sbjct:    2 VKNTEHFIETMRTQEILNQDTMVSFDVSSLFTNVPTDQTLEIVRKKLEEDQTLAERTTLSIHAIMDMLSVCIKTTYFQVDNIFYQQEFGMAMGSPLSPVLADIYMEDFEGRAL--DQYVLKPKLWRRYVDDTFVIWPHGKETIAGFLEHLN 150          
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Match: UPI001E277682 (uncharacterized protein LOC123678684 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E277682)

HSP 1 Score: 109 bits (272), Expect = 7.340e-25
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    1 VKNYFELKKMLKGVKLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVN 453
            VKN     + ++  ++     +VSFDV +L+ ++P  + LE+VR+KLEED+TL ERT  S   I+++L +C++T +  +D   + Q  G  +G  +S  +A IY+  FE + +  D+   KP LW R  DD F+IW HG+E +   L H+N
Sbjct:  270 VKNTEHFIETMRTQEILNQDTMVSFDVSSLFTNVPTDQTLEIVRKKLEEDQTLAERTTLSINAIMDMLSVCIKTTYFQVDNIFYQQEFGMAMGSPLSPVLADIYMEDFEGRAL--DQYVLKPKLWRRYVDDTFVIWPHGKETIAGFLEHLN 418          
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Match: UPI001E276C2B (uncharacterized protein LOC123672141 n=2 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E276C2B)

HSP 1 Score: 108 bits (271), Expect = 1.020e-24
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    1 VKNYFELKKMLKGVKLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVN 453
            VKN     + ++  ++     +VSFDV +L+ ++P  + LE+VR+KLEED+TL ERT  S   I+++L +C++T +  +D   + Q  G  +G  +S  +A IY+  FE + +  D+   KP LW R  DD F+IW HG+E +   L H+N
Sbjct:  299 VKNTEPFIETMRTQEILNQDTMVSFDVSSLFTNVPTDQTLEIVRKKLEEDQTLAERTTLSINAIMDMLSVCIKTTYFQVDNIFYQQEFGMAMGSPLSPVLADIYMEDFEGRAL--DQYVLKPKLWRRYVDDTFVIWPHGKETITGFLEHLN 447          
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Match: UPI001C91F7F2 (uncharacterized protein LOC122370714 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C91F7F2)

HSP 1 Score: 102 bits (253), Expect = 1.530e-22
Identity = 54/141 (38.30%), Postives = 83/141 (58.87%), Query Frame = 1
Query:   31 LKGVKLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPWSPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVN 453
            LK + L+ +  ++SFDV +L+  +PV++A++V+  KL ED+TL ER+      I +L+  CLE  +    G  + Q +G P+G S+S  +A  Y+   E+  + S   K  PTLW R  DD FI+W HG+E LQE    +N
Sbjct:   75 LKQLDLNGSEEMMSFDVVSLFTRVPVQEAVDVICDKLAEDDTLFERSEIGVDSIRKLMLACLECRYFLCLGAFYEQKEGAPMGLSLSVVLANAYMEHLEQSILTSATLK--PTLWRRYVDDTFILWPHGDEALQEFHQRLN 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1023.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1V4J2_HETAK3.660e-10097.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XWS7_HETAK1.260e-5978.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DDA1_HETAK8.220e-3848.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2J7QJN5_9NEOP9.280e-3041.72Reverse transcriptase domain-containing protein n=... [more]
A0A2J7PER2_9NEOP2.090e-2841.84Reverse transcriptase domain-containing protein (F... [more]
A0A1V4SZP3_9GAMM4.170e-2743.20Reverse transcriptase domain-containing protein (F... [more]
UPI001E274E292.980e-2537.09uncharacterized protein LOC123683035 n=1 Tax=Harmo... [more]
UPI001E2776827.340e-2537.09uncharacterized protein LOC123678684 n=1 Tax=Harmo... [more]
UPI001E276C2B1.020e-2437.09uncharacterized protein LOC123672141 n=2 Tax=Harmo... [more]
UPI001C91F7F21.530e-2238.30uncharacterized protein LOC122370714 n=1 Tax=Amphi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1023contigH-akashiwo_Contig1023:353168..353620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7668.SPU_001642-tr
PFAMsRVT_1
Model size453
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.97e-22
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387054.6706185-UTR-H-akashiwo_Contig1023:353167..3531941681387054.6706185-UTR-H-akashiwo_Contig1023:353167..353194Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1023 353168..353194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387054.6853914-CDS-H-akashiwo_Contig1023:353194..3536201681387054.6853914-CDS-H-akashiwo_Contig1023:353194..353620Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1023 353195..353620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1023.12.1prot_H-akashiwo_Contig1023.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1023 353195..353620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1023.12.1

>prot_H-akashiwo_Contig1023.12.1 ID=prot_H-akashiwo_Contig1023.12.1|Name=mRNA_H-akashiwo_Contig1023.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=142bp
MLKGVKLSRNSRLVSFDVKALYPSIPVKKALEVVRQKLEEDETLPERTPW
SPAQIVELLQICLETHFKTIDGQIFTQSDGTPIGKSISGPIAGIYLNWFE
EQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVN
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mRNA from alignment at H-akashiwo_Contig1023:353168..353620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1023.12.1 ID=mRNA_H-akashiwo_Contig1023.12.1|Name=mRNA_H-akashiwo_Contig1023.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig1023:353168..353620+ (Heterosigma akashiwo CCMP452)
GTCAAAAACTATTTTGAGTTGAAGAAGATGCTCAAGGGGGTGAAGTTGAG CAGGAACTCCAGGCTGGTCTCCTTTGACGTGAAGGCGCTGTATCCATCCA TTCCAGTGAAGAAGGCTTTGGAGGTGGTGAGGCAGAAGCTAGAGGAGGAT GAGACTCTACCTGAACGGACGCCATGGAGCCCAGCGCAGATTGTGGAGTT GTTGCAGATTTGCCTTGAAACTCATTTCAAGACAATTGATGGGCAGATCT TCACGCAGTCTGACGGGACTCCTATCGGCAAGTCCATCTcCGGTCCCATT GCAGGTATATATTTGAACTGGTTCGAAGAACAGTTCATCTATAGTGACAG GTGCAAGCACAAGCCCACCCTGTGGGTGAGGATGAgGGATGATGTGTTCA TCATTTGGGACCATGGGGAGGAGAAGCTACAGGAGCTGTTGAGCCATGTG AAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1023:353168..353620+

>mRNA_H-akashiwo_Contig1023.12.1 ID=mRNA_H-akashiwo_Contig1023.12.1|Name=mRNA_H-akashiwo_Contig1023.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=426bp|location=Sequence derived from alignment at H-akashiwo_Contig1023:353168..353620+ (Heterosigma akashiwo CCMP452)
ATGCTCAAGGGGGTGAAGTTGAGCAGGAACTCCAGGCTGGTCTCCTTTGA
CGTGAAGGCGCTGTATCCATCCATTCCAGTGAAGAAGGCTTTGGAGGTGG
TGAGGCAGAAGCTAGAGGAGGATGAGACTCTACCTGAACGGACGCCATGG
AGCCCAGCGCAGATTGTGGAGTTGTTGCAGATTTGCCTTGAAACTCATTT
CAAGACAATTGATGGGCAGATCTTCACGCAGTCTGACGGGACTCCTATCG
GCAAGTCCATCTcCGGTCCCATTGCAGGTATATATTTGAACTGGTTCGAA
GAACAGTTCATCTATAGTGACAGGTGCAAGCACAAGCCCACCCTGTGGGT
GAGGATGAgGGATGATGTGTTCATCATTTGGGACCATGGGGAGGAGAAGC
TACAGGAGCTGTTGAGCCATGTGAAT
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