mRNA_H-akashiwo_Contig1022.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1022.2.1
Unique NamemRNA_H-akashiwo_Contig1022.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1022.2.1 vs. uniprot
Match: A0A7S3YET0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YET0_HETAK)

HSP 1 Score: 358 bits (920), Expect = 2.820e-123
Identity = 182/194 (93.81%), Postives = 184/194 (94.85%), Query Frame = 1
Query:    1 MAVGILQDQVASGLAAYYQMALNGLQSKTDSDEPDVFLRMLGFKHRLSRTIFSSTAEASHPSSADSGESVAPDCAYAFCCDGALPSRLLAELGPNWG-PGGPFWREHAYPTPSFFSYSYDLAAPPSNLVEAAIRRLFPLVRQRFPAAAAARTAEWWVHLRDSGGQHQLHYDSDEVRLVGG-GLRHPAVSSVVYL 576
            MA GILQDQVASGLAAYYQMALNGLQSKTDSDEPDVFLRMLGFKHRLSRTIFSSTAE SHPSSA+SGESVAPDCAYAFCCDGALPSRLLAEL   +G PGGPFWREHAYPTPSFFSYSYDL A PSNLVEAAIRRLFPLVRQRFPAAAAARTAEWWVHLRDSGGQHQLHYDSDEVRLV G GLRHPAVSSVVYL
Sbjct:  103 MAEGILQDQVASGLAAYYQMALNGLQSKTDSDEPDVFLRMLGFKHRLSRTIFSSTAEESHPSSANSGESVAPDCAYAFCCDGALPSRLLAELRAKFGDPGGPFWREHAYPTPSFFSYSYDLTASPSNLVEAAIRRLFPLVRQRFPAAAAARTAEWWVHLRDSGGQHQLHYDSDEVRLVRGEGLRHPAVSSVVYL 296          
BLAST of mRNA_H-akashiwo_Contig1022.2.1 vs. uniprot
Match: A0A1Q9EUV9_SYMMI (Putative prolyl 4-hydroxylase 11 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EUV9_SYMMI)

HSP 1 Score: 94.0 bits (232), Expect = 7.640e-19
Identity = 69/199 (34.67%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   34 SGLAAYYQMALNGLQSKTDSDEPDVFLRMLGFKHRLSRTIFSSTAEASHPSSADSGESVAPDCAYAFCCDGALPSRLLAELGPNWGPGGPFWREHAYPTPSFFSYSYDL-----AAPPSNLVEAAIRRLFPLVRQRFPAAAAAR-------TAEWWVHLRD--SGGQHQLHYDSDEVRLV----GGGLRHPAVSSVVYL 576
            + L A Y++AL  L      +E D +LR LG   +L  ++   +           G +   +       D  LPS LL  +   +  G PFW+EH YPTPSFFSY+  L     AA  + L+ A   R+  L    FP+            + EWW H R   SG  HQLHYD DEV L     G    HP VS V+YL
Sbjct:   57 ASLVAKYELALL-LSQLGRHEEADTWLRQLGLTWKLCPSVLDGSCLK--------GPTCRGEANLVAAFDDVLPSELLLLVQDAFRAGSPFWKEHKYPTPSFFSYNEPLMPDCAAATGAPLIRAVASRVKSLAVASFPSIFGTEGCERRVSSVEWWAHTRPAGSGSGHQLHYDLDEVSLPTLKEGSLPHHPLVSCVLYL 246          
BLAST of mRNA_H-akashiwo_Contig1022.2.1 vs. uniprot
Match: A0A812RQL1_SYMMI (P4H11 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RQL1_SYMMI)

HSP 1 Score: 92.0 bits (227), Expect = 3.260e-18
Identity = 68/195 (34.87%), Postives = 88/195 (45.13%), Query Frame = 1
Query:   46 AYYQMALNGLQSKTDSDEPDVFLRMLGFKHRLSRTIFSSTAEASHPSSADSGESVAPDCAYAFCCDGALPSRLLAELGPNWGPGGPFWREHAYPTPSFFSYSYDL-----AAPPSNLVEAAIRRLFPLVRQRFPAAAAAR-------TAEWWVHLRD--SGGQHQLHYDSDEVRLV----GGGLRHPAVSSVVYL 576
            A Y++AL  L      +E D +LR LG   +L  ++   +           G +   +       D  LPS LL  +   +  G PFW+EH YPTPSFFSY+  L     AA  + L+ A   R+  L    FP+            + EWW H R   SG  HQLHYD DEV L     G    HP VS V+YL
Sbjct:   38 AKYELALL-LSQLGRHEEADTWLRQLGLTWKLCPSVLDGSCLK--------GPTCRGEANLVAAFDDVLPSELLLLVQDAFRAGSPFWKEHKYPTPSFFSYNEPLMPDCAAATGAPLIRAVASRVKSLAVASFPSIFGTEGCERRVSSVEWWAHTRPAGSGSGHQLHYDLDEVSLPTLKEGSLPHHPLVSCVLYL 223          
BLAST of mRNA_H-akashiwo_Contig1022.2.1 vs. uniprot
Match: A0A812QR73_9DINO (Rsph1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812QR73_9DINO)

HSP 1 Score: 92.0 bits (227), Expect = 3.550e-18
Identity = 68/195 (34.87%), Postives = 88/195 (45.13%), Query Frame = 1
Query:   46 AYYQMALNGLQSKTDSDEPDVFLRMLGFKHRLSRTIFSSTAEASHPSSADSGESVAPDCAYAFCCDGALPSRLLAELGPNWGPGGPFWREHAYPTPSFFSYSYDL-----AAPPSNLVEAAIRRLFPLVRQRFPAAAAAR-------TAEWWVHLRD--SGGQHQLHYDSDEVRLV----GGGLRHPAVSSVVYL 576
            A Y++AL  L      +E D +LR LG   +L  ++   +           G +   +       D  LPS LL  +   +  G PFW+EH YPTPSFFSY+  L     AA  + L+ A   R+  L    FP+            + EWW H R   SG  HQLHYD DEV L     G    HP VS V+YL
Sbjct: 1164 AKYELALL-LSQLGRHEEADTWLRQLGLTWKLCPSVLDGSCLK--------GPTCRGEANLVAAFDDVLPSELLRLVQDAFRAGSPFWKEHKYPTPSFFSYNEPLMPDCAAATGAPLIRAVASRVKSLAVASFPSIFGTEGCERRVSSVEWWAHTRPAGSGSGHQLHYDLDEVSLPTLKEGSLPHHPLVSCVLYL 1349          
BLAST of mRNA_H-akashiwo_Contig1022.2.1 vs. uniprot
Match: A0A812YZQ7_9DINO (P4H11 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812YZQ7_9DINO)

HSP 1 Score: 89.4 bits (220), Expect = 3.010e-17
Identity = 67/195 (34.36%), Postives = 87/195 (44.62%), Query Frame = 1
Query:   46 AYYQMALNGLQSKTDSDEPDVFLRMLGFKHRLSRTIFSSTAEASHPSSADSGESVAPDCAYAFCCDGALPSRLLAELGPNWGPGGPFWREHAYPTPSFFSYSYDL-----AAPPSNLVEAAIRRLFPLVRQRFPAAAAAR-------TAEWWVHLRD--SGGQHQLHYDSDEVRLV----GGGLRHPAVSSVVYL 576
            A Y++AL  L      +E D +LR LG   +L  ++   +           G +   +       D  LPS LL  +   +  G PFW+EH YPTPSFFSY+  L     A   + L+ A   R+  L    FP+            + EWW H R   SG  HQLHYD DEV L     G    HP VS V+YL
Sbjct:   54 AKYELALL-LSQLGRHEEADDWLRQLGLTWKLCPSVLDGSCLK--------GPTCRGEANLVAAFDDVLPSELLCLVQDAFRAGSPFWKEHKYPTPSFFSYNEPLMPECAAETGAPLIRAVASRVKSLAVASFPSIFGTEGCGRQVSSVEWWAHTRPAGSGSGHQLHYDLDEVSLPTLKEGSLPHHPLVSCVLYL 239          
BLAST of mRNA_H-akashiwo_Contig1022.2.1 vs. uniprot
Match: A0A7S3M9M5_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9M5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.070e-14
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  316 HAYPTPSFFSYSYDLA--APPSNLVEAAIRRLFPLVRQRFPAAAAARTAEWWVHLRDSGGQHQLHYDSDEVRLVGGGL-RHPAVSSVVYL 576
            +A  T  +FSY Y L   AP  ++ +     +FP V ++FP AA A  AEWWVH R     HQLH+DSDE R++ G   +HP VS+V+YL
Sbjct:    9 NASSTVGYFSYLYPLKERAPKCSVEQIIFNTIFPAVCEQFPQAAEANYAEWWVHSRPHSNGHQLHFDSDETRIMSGRTPQHPLVSTVLYL 98          
BLAST of mRNA_H-akashiwo_Contig1022.2.1 vs. uniprot
Match: A0A0M0JSE5_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JSE5_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 2.160e-11
Identity = 56/157 (35.67%), Postives = 65/157 (41.40%), Query Frame = 1
Query:  112 LRMLGFKHRLSRTIFSSTAEASHPSSADSGESVAPDCAYAFCCDGALPSRLLAELGPNWGPGGPFWREHAYPTPS--FFSYSYDLAAPPSNLVEAAIRRLFPLVRQRFPAAAAARTAEWWVHLRDSGGQHQLHYDSDEVRLVGGGLRHPAVSSVVYL 576
            LR  GF  RLS  +        H S   + ES  P    A   D AL                  W        S  FFSY + L   P    E  +  L  +  + FP A AAR  EWW H R  G  HQLH+DSD+     GGLRHP VSS +YL
Sbjct:  128 LRRGGFICRLSPAVL-----RYHESETSAPESPPPP-ELAHAVDSALAPXXXXXXXXXXXXXXXXWSXXXXXCGSSPFFSYVHPLDVAPRIGFERVLGALHAIACKHFPRARAARYVEWWAHCRPHGVGHQLHFDSDKEGE--GGLRHPLVSSALYL 276          
BLAST of mRNA_H-akashiwo_Contig1022.2.1 vs. uniprot
Match: K0TGI8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGI8_THAOC)

HSP 1 Score: 64.3 bits (155), Expect = 1.000e-8
Identity = 52/164 (31.71%), Postives = 69/164 (42.07%), Query Frame = 1
Query:   79 SKTDSDEPDVFLRMLGFKHRLSRTIFSSTAEASHPSSADSGESVAPDCAYAFCCDGALPSRLLAELGPNWGPGGPFWREHAYPTPS--FFSYSYDLAAPP------------SNLVEAAIRRLFPLVRQRFPAAAAARTAEWWVHLRDSGGQHQLHYDSDEVRL 528
            S T+  E D+ L  LG++ RLS+         +      S +S  P  A     DGA+PS+L   L     P   +W  H Y      F S++  L A               +L E      F  ++ RFP    A + E W H R + GQHQLHYD DEV L
Sbjct:   26 SSTEETEADLVLTRLGYRLRLSKFALGYNINRTVKRVDPSRDSRRPPSAV-HAVDGAMPSKLFQSLQHALRPHSRYW-SHFYSKAGNQFASHNITLDAGDRAGSVELRLNNSKSLFEQIAIIAFQKMKSRFPQIKHATSVEVWAHKRPADGQHQLHYDMDEVLL 187          
BLAST of mRNA_H-akashiwo_Contig1022.2.1 vs. uniprot
Match: A0A7S4BYL3_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BYL3_CHRCT)

HSP 1 Score: 61.6 bits (148), Expect = 8.840e-8
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1
Query:  442 AARTAEWWVHLRDSGGQHQLHYDSDEVRLVGGG-LRHPAVSSVVYLG 579
            A   AEWWVH R +G  HQ+HYD DE RL   G +RHP +SSV+YLG
Sbjct:  211 ALEAAEWWVHTRCTGEGHQMHYDLDESRLASHGEVRHPLISSVLYLG 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1022.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S3YET0_HETAK2.820e-12393.81Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1Q9EUV9_SYMMI7.640e-1934.67Putative prolyl 4-hydroxylase 11 n=1 Tax=Symbiodin... [more]
A0A812RQL1_SYMMI3.260e-1834.87P4H11 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A812QR73_9DINO3.550e-1834.87Rsph1 protein n=1 Tax=Symbiodinium necroappetens T... [more]
A0A812YZQ7_9DINO3.010e-1734.36P4H11 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A7S3M9M5_9STRA3.070e-1445.56Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A0M0JSE5_9EUKA2.160e-1135.67Uncharacterized protein (Fragment) n=1 Tax=Chrysoc... [more]
K0TGI8_THAOC1.000e-831.71Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4BYL3_CHRCT8.840e-859.57Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1022contigH-akashiwo_Contig1022:200399..200977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2903.EOD39624
Model size579
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.28e-33
EggNOG OGs2E34Y@1|root,2SA9R@2759|Eukaryota
Cds size579
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387054.2046115-CDS-H-akashiwo_Contig1022:200398..2009771681387054.2046115-CDS-H-akashiwo_Contig1022:200398..200977Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1022 200399..200977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1022.2.1prot_H-akashiwo_Contig1022.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1022 200399..200977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1022.2.1

>prot_H-akashiwo_Contig1022.2.1 ID=prot_H-akashiwo_Contig1022.2.1|Name=mRNA_H-akashiwo_Contig1022.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=193bp
MAVGILQDQVASGLAAYYQMALNGLQSKTDSDEPDVFLRMLGFKHRLSRT
IFSSTAEASHPSSADSGESVAPDCAYAFCCDGALPSRLLAELGPNWGPGG
PFWREHAYPTPSFFSYSYDLAAPPSNLVEAAIRRLFPLVRQRFPAAAAAR
TAEWWVHLRDSGGQHQLHYDSDEVRLVGGGLRHPAVSSVVYLG
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mRNA from alignment at H-akashiwo_Contig1022:200399..200977-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1022.2.1 ID=mRNA_H-akashiwo_Contig1022.2.1|Name=mRNA_H-akashiwo_Contig1022.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=579bp|location=Sequence derived from alignment at H-akashiwo_Contig1022:200399..200977- (Heterosigma akashiwo CCMP452)
ATGGCTGTGGGCATTCTTCAAGATCAAGTTGCATCAGGATTAGCCGCGTA CTATCAGATGGCTCTGAATGGTCTTCAGAGTAAGACTGACTCAGATGAAC CGGATGTTTTCTTAAGAATGCTCGGCTTCAAACACCGGCTCTCTCGTACA ATCTTCTCATCGACTGCGGAGGCAAGCCACCCAAGTAGTGCTGATAGCGG CGAGAGTGTCGCCCCGGACTGTGCATACGCCTTTTGCTGCGACGGTGCCC TGCCTTCCCGGTTGCTCGCCGAGCTCGGGCCAAATTGGGGACCAGGCGGC CCATTCTGGCGCGAGCACGCCTACCCAACGCCTTCCTTCTTCTCCTACTC CTACGACCTTGCCGCCCCGCCCTCAAACCTCGTGGAGGCCGCGATCCGCC GCCTGTTCCCCCTGGTCCGGCAGCGCTTCCCTGCGGCGGCCGCCGCCCGG ACCGCCGAGTGGTGGGTGCACCTGCGCGACTCGGGGGGCCAGCACCAGCT GCACTACGACTCGGACGAGGTTCGCCTGGTCGGGGGAGGCCTCCGCCACC CTGCGGTCAGCTCGGTGGTCTACCTCGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1022:200399..200977-

>mRNA_H-akashiwo_Contig1022.2.1 ID=mRNA_H-akashiwo_Contig1022.2.1|Name=mRNA_H-akashiwo_Contig1022.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=579bp|location=Sequence derived from alignment at H-akashiwo_Contig1022:200399..200977- (Heterosigma akashiwo CCMP452)
ATGGCTGTGGGCATTCTTCAAGATCAAGTTGCATCAGGATTAGCCGCGTA
CTATCAGATGGCTCTGAATGGTCTTCAGAGTAAGACTGACTCAGATGAAC
CGGATGTTTTCTTAAGAATGCTCGGCTTCAAACACCGGCTCTCTCGTACA
ATCTTCTCATCGACTGCGGAGGCAAGCCACCCAAGTAGTGCTGATAGCGG
CGAGAGTGTCGCCCCGGACTGTGCATACGCCTTTTGCTGCGACGGTGCCC
TGCCTTCCCGGTTGCTCGCCGAGCTCGGGCCAAATTGGGGACCAGGCGGC
CCATTCTGGCGCGAGCACGCCTACCCAACGCCTTCCTTCTTCTCCTACTC
CTACGACCTTGCCGCCCCGCCCTCAAACCTCGTGGAGGCCGCGATCCGCC
GCCTGTTCCCCCTGGTCCGGCAGCGCTTCCCTGCGGCGGCCGCCGCCCGG
ACCGCCGAGTGGTGGGTGCACCTGCGCGACTCGGGGGGCCAGCACCAGCT
GCACTACGACTCGGACGAGGTTCGCCTGGTCGGGGGAGGCCTCCGCCACC
CTGCGGTCAGCTCGGTGGTCTACCTCGGG
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