mRNA_H-akashiwo_Contig1021.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1021.7.1
Unique NamemRNA_H-akashiwo_Contig1021.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1021.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1021contigH-akashiwo_Contig1021:145693..146160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size286
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387053.7675405-CDS-H-akashiwo_Contig1021:145692..1457831681387053.7675405-CDS-H-akashiwo_Contig1021:145692..145783Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1021 145693..145783 -
1681387053.7782407-CDS-H-akashiwo_Contig1021:145967..1461191681387053.7782407-CDS-H-akashiwo_Contig1021:145967..146119Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1021 145968..146119 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387053.7894135-UTR-H-akashiwo_Contig1021:146119..1461601681387053.7894135-UTR-H-akashiwo_Contig1021:146119..146160Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1021 146120..146160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1021.7.1prot_H-akashiwo_Contig1021.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1021 145693..146119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1021.7.1

>prot_H-akashiwo_Contig1021.7.1 ID=prot_H-akashiwo_Contig1021.7.1|Name=mRNA_H-akashiwo_Contig1021.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=81bp
MDLVVTMESDATAALIKHSDSSAAVQDDKGSTSNPSVTLDGLLTRKWLVM
GLVAALSFGSDFSGYFISASVDTCEGHLPGL
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mRNA from alignment at H-akashiwo_Contig1021:145693..146160-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1021.7.1 ID=mRNA_H-akashiwo_Contig1021.7.1|Name=mRNA_H-akashiwo_Contig1021.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=468bp|location=Sequence derived from alignment at H-akashiwo_Contig1021:145693..146160- (Heterosigma akashiwo CCMP452)
GTATATAAAAAATAATAATGCGCATGATGGGAGAATAGTCGATGGATTTG
GTGGTCACGATGGAATCCGACGCGACAGCAGCTCTGATCAAACATTCTGA
TTCATCAGCTGCAGTGCAGGATGATAAAGGTTCGACCTCAAATCCCTCGG
TGACTCTGGATGGGCTTTTAACAAGGAAATGGCTAGTCATGGGGTAGGCT
TAATTTATCATAGCAAAGAAGAGGGGCGTGTTTCACCTTTCTTCACATGC
CTGCTTCAACAAACACAGCATCATTGTCATTGTTTGTCCTTTTCCTCGAT
ATATCATGACCTACACCTTCGGGTGTTTCATGCACGAAACTGTATTTCAA
TAACATTTTGCTTTTATTTTTTGAAAGCCTTGTGGCAGCTTTGAGCTTTG
GGAGCGATTTTTCTGGTTATTTCATTTCAGCAAGCGTTGATACTTGTGAG
GGCCATTTGCCAGGCTTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1021:145693..146160-

>mRNA_H-akashiwo_Contig1021.7.1 ID=mRNA_H-akashiwo_Contig1021.7.1|Name=mRNA_H-akashiwo_Contig1021.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=243bp|location=Sequence derived from alignment at H-akashiwo_Contig1021:145693..146160- (Heterosigma akashiwo CCMP452)
ATGGATTTGGTGGTCACGATGGAATCCGACGCGACAGCAGCTCTGATCAA
ACATTCTGATTCATCAGCTGCAGTGCAGGATGATAAAGGTTCGACCTCAA
ATCCCTCGGTGACTCTGGATGGGCTTTTAACAAGGAAATGGCTAGTCATG
GGCCTTGTGGCAGCTTTGAGCTTTGGGAGCGATTTTTCTGGTTATTTCAT
TTCAGCAAGCGTTGATACTTGTGAGGGCCATTTGCCAGGCTTG
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