mRNA_H-akashiwo_Contig1021.12.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1021.12.1
Unique NamemRNA_H-akashiwo_Contig1021.12.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Match: A0A8J6WTM4_9CYAN (YdcF family protein n=3 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6WTM4_9CYAN)

HSP 1 Score: 92.0 bits (227), Expect = 3.810e-20
Identity = 63/151 (41.72%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   16 AIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDIYQLTR-GLTPDYNGDYGIIIDRRAVDTVTNFTRSFGILKQLEINKVIIATSKYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYIWLFLG 465
            A+++LGG  ERE+ A E      +EHP       ISS    +   +     G+ PD      +IIDR AVDTVTNFT      K   I+ V + TS YHMRRA  IG I+LG++GI  + + V  GR    ESL K VRD  RA +W+  G
Sbjct:   54 AVLVLGGAPEREVFAAEF----AREHPQI--SVWISSGSNPEYTEWAFAEAGIAPDR-----VIIDREAVDTVTNFTTLVDKFKAEGIDSVYLITSDYHMRRAQVIGEIVLGSRGIDFKPVSVPSGRS--PESLEKAVRDGARAILWVATG 191          
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Match: UPI0007399A3F (YdcF family protein n=1 Tax=Synechococcales cyanobacterium M55_K2018_004 TaxID=2774347 RepID=UPI0007399A3F)

HSP 1 Score: 87.4 bits (215), Expect = 2.810e-18
Identity = 60/159 (37.74%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   16 AIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDIYQLTRGLTPDYN----GDYGIIIDR-----RAVDTVTNFTRSFGILKQLEINKVIIATSKYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYIWLFLG 465
            A+++LGG KERE  A E      K+HPD P                 ++ G  P+++    G+ GI  +R      AVDTVTNFT      K   I+ + + TS  HMRRA+ IG I++G++GI I+ + V  GR    ESL KVVRD  R+ +W+  G
Sbjct:   56 AVLVLGGAKEREEFAAEF----AKQHPDLPI---------------WISSGSNPEFSEWVFGEAGISPNRIHRDYEAVDTVTNFTTLVDDFKAQGIDSIYLITSDDHMRRAWVIGEIVMGSRGIGIKTVAVPSGRS--PESLDKVVRDAARSILWVVTG 193          
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Match: A0A563W5L4_9CYAN (DUF218 domain-containing protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563W5L4_9CYAN)

HSP 1 Score: 86.7 bits (213), Expect = 3.950e-18
Identity = 57/150 (38.00%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   16 AIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDIYQLTRGLTPDYNGDYGIIIDRRAVDTVTNFTRSFGILKQLEINKVIIATSKYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYIWLFLG 465
            AI+ILGG  +RE+   +        +P+ P   I  S  A D    Q+ R    D N  Y   +DRRA DTVTNFT      +Q +I  + + TS YH+ RA  I  ++LG+KGI    + V + R   +ES F+++RD IRA+IW+  G
Sbjct:   58 AILILGGSHKRELFTAQFAHL----YPNIP---IWLSSGADDTISRQIFRDAGIDLNRVY---LDRRATDTVTNFTTLVKDFQQHKIKHIYLVTSDYHISRASAIATVVLGSKGIAFSPISVPEDRP--RESSFRIMRDTIRAFIWITTG 195          
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Match: D8G580_9CYAN (DUF218 domain-containing protein n=1 Tax=Kamptonema sp. PCC 6506 TaxID=272129 RepID=D8G580_9CYAN)

HSP 1 Score: 85.5 bits (210), Expect = 8.710e-18
Identity = 58/150 (38.67%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   16 AIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDIYQLTRGLTPDYNGDYGIIIDRRAVDTVTNFTRSFGILKQLEINKVIIATSKYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYIWLFLG 465
            A+ +LGG  ERE+ A +      +EHP  P      S     + ++    G+ P+      + +D RAVDTVTNFT     LK   I  V + TS  HMRRA  IG I+LG++GI  + + V  GR    E + KVVRD +RA +WL  G
Sbjct:   47 ALFVLGGAAEREVFAAKF----AREHPQLPIWVSSGSNPEYAEWVF-AEAGIDPER-----LHLDYRAVDTVTNFTTLVDELKAQGIQSVYLITSDDHMRRARIIGEIVLGSRGISFKAIPVPSGR--APEPIEKVVRDGVRAIVWLTTG 184          
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Match: A0A6J4HCW7_9CYAN (DUF218 domain-containing protein n=1 Tax=uncultured Coleofasciculus sp. TaxID=1267456 RepID=A0A6J4HCW7_9CYAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.010e-16
Identity = 58/150 (38.67%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   16 AIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDIYQLTRGLTPDYNGDYGIIIDRRAVDTVTNFTRSFGILKQLEINKVIIATSKYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYIWLFLG 465
            AI +LGG +ERE+ A ++ Q    +HP+ P      S E   + I+    G+         + IDRRAVDTVTNFT     L+   I+ V + TS  HMRRA  IG ++ G++ I I+ L V  GR+   E L K +RD  RA +W+  G
Sbjct:   81 AIFVLGGAEERELYAAKIAQ----QHPEIPIWVSSGSSEWYTEKIFAKA-GIERKR-----LHIDRRAVDTVTNFTTLVDELQAQGIDSVYLITSDDHMRRARVIGEVVFGSRAIVIKPLSVPSGRQ--SEPLEKALRDGARAILWVTTG 218          
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Match: A0A3M1PDJ2_9CYAN (YdcF family protein n=1 Tax=Cyanobacteria bacterium J069 TaxID=2420337 RepID=A0A3M1PDJ2_9CYAN)

HSP 1 Score: 82.8 bits (203), Expect = 1.150e-16
Identity = 57/154 (37.01%), Postives = 81/154 (52.60%), Query Frame = 1
Query:    4 QLKTAIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDIYQLTRGLTPDYNGDYGIIIDRRAVDTVTNFTRSFGILKQLEINKVIIATSKYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYIWLFLG 465
            Q   A+++LGG  ERE  A E      K HPD P      S     + +++   G+  D      + +D RAVDT+TNFT      +   I+ V + TS YHMRRA+ IG I+LG++GI  + + V     L +E+  KVVRD  RA +W+  G
Sbjct:   52 QKPDAVLVLGGATEREQFAAEF----AKLHPDLPIWVSSGSNPEYAEWVFEQA-GIERDR-----LSLDYRAVDTLTNFTTLVDEFESRGISSVYLITSDYHMRRAWVIGKIVLGSRGIEFKPVTVPS--TLPRETSDKVVRDAARAVLWVTTG 193          
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Match: UPI0019F20A37 (YdcF family protein n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI0019F20A37)

HSP 1 Score: 82.0 bits (201), Expect = 2.910e-16
Identity = 58/155 (37.42%), Postives = 79/155 (50.97%), Query Frame = 1
Query:    1 MQLKTAIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDIYQLTRGLTPDYNGDYGIIIDRRAVDTVTNFTRSFGILKQLEINKVIIATSKYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYIWLFLG 465
            +Q   AI++LGG+ ERE  A E  Q    +HPD     + S       +      G+ PD      + +D RAVDTVTNFT      +   I  + + TS YHMRRA  IG I+LG++GI    + V   R+   ES+ K VRD  R+ +WL  G
Sbjct:   60 LQKPQAILVLGGDIERETFAAEFAQ----QHPDLEIW-VSSGTNPEFAEWNFAEAGIRPDR-----VHLDYRAVDTVTNFTTLVDDFEAEGITSLYLITSDYHMRRAQVIGEIVLGSRGISYRAIAVPSERE--PESIDKSVRDAARSVLWLTTG 202          
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Match: A0A2G4EY10_9CYAN (YdcF family protein n=2 Tax=Tychonema TaxID=54312 RepID=A0A2G4EY10_9CYAN)

HSP 1 Score: 81.3 bits (199), Expect = 3.520e-16
Identity = 55/154 (35.71%), Postives = 80/154 (51.95%), Query Frame = 1
Query:    4 QLKTAIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDIYQLTRGLTPDYNGDYGIIIDRRAVDTVTNFTRSFGILKQLEINKVIIATSKYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYIWLFLG 465
            Q   A+++LGG  ERE+ A        ++HP  P      S     + ++    G+  D      + +D RAVDTVTNFT     L+   I+ + + TS  HMRRA+ IG I+ G++GI  + + V  GR+   E L K VRD +RA +WL  G
Sbjct:   43 QRPEALLVLGGATEREVFAANF----ARKHPGLPIWVSSGSNREFAEWVFSEA-GIQSDR-----VHLDYRAVDTVTNFTTLVDELRDRGIDSLYLITSDDHMRRAWIIGEIVFGSRGISFKPVAVPSGRE--PEPLQKAVRDGVRAIVWLTTG 184          
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Match: A0A6P0MHU7_9CYAN (YdcF family protein n=1 Tax=Symploca sp. SIO2C1 TaxID=2607783 RepID=A0A6P0MHU7_9CYAN)

HSP 1 Score: 81.3 bits (199), Expect = 4.050e-16
Identity = 62/155 (40.00%), Postives = 77/155 (49.68%), Query Frame = 1
Query:   16 AIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDIYQLTRGLTPDYNGDYGII-----IDRRAVDTVTNFTRSFGILKQLEINKVIIATSKYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYIWLFLG 465
            AI +LGG +ERE  A +      K HP+        S E   Q I+              GII     IDRRAVDTVTNFT     L+   I+ V + TS  HMRRA  IG I+ G++GI +E L V  GR    E + K  RD +RA +WL  G
Sbjct:   52 AIFVLGGAEERESFAAKF----AKLHPELDIWVSSGSPEWYTQKIFAKA-----------GIIQERLHIDRRAVDTVTNFTTLVDELQAEGIDSVYLVTSDDHMRRARVIGEIVFGSRGIILEPLPVTSGRS--PEPIDKSFRDGLRAILWLATG 189          
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Match: UPI001A069DE2 (YdcF family protein n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI001A069DE2)

HSP 1 Score: 81.3 bits (199), Expect = 4.740e-16
Identity = 56/150 (37.33%), Postives = 77/150 (51.33%), Query Frame = 1
Query:   16 AIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDIYQLTRGLTPDYNGDYGIIIDRRAVDTVTNFTRSFGILKQLEINKVIIATSKYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYIWLFLG 465
            A+++LGG  ERE  A E      + HPD P      S     + ++  + G+  D      I +D +AVDTVTNFT      K   I  + + TS YHM RA  IG I+LG++GI  + +EV   +    E L KVVRD  RA +W+  G
Sbjct:   60 AVLVLGGATERERFAAEF----ARHHPDLPIWVSSGSNPEYAEWVF-TSAGIDNDR-----IHLDYQAVDTVTNFTTLADYFKTQGIESLYVITSDYHMTRARVIGEIVLGSRGIQFQPIEVPSEQS--PEPLNKVVRDAARAILWVATG 197          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1021.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J6WTM4_9CYAN3.810e-2041.72YdcF family protein n=3 Tax=unclassified Trichocol... [more]
UPI0007399A3F2.810e-1837.74YdcF family protein n=1 Tax=Synechococcales cyanob... [more]
A0A563W5L4_9CYAN3.950e-1838.00DUF218 domain-containing protein n=1 Tax=Hyella pa... [more]
D8G580_9CYAN8.710e-1838.67DUF218 domain-containing protein n=1 Tax=Kamptonem... [more]
A0A6J4HCW7_9CYAN1.010e-1638.67DUF218 domain-containing protein n=1 Tax=unculture... [more]
A0A3M1PDJ2_9CYAN1.150e-1637.01YdcF family protein n=1 Tax=Cyanobacteria bacteriu... [more]
UPI0019F20A372.910e-1637.42YdcF family protein n=1 Tax=Synechococcales cyanob... [more]
A0A2G4EY10_9CYAN3.520e-1635.71YdcF family protein n=2 Tax=Tychonema TaxID=54312 ... [more]
A0A6P0MHU7_9CYAN4.050e-1640.00YdcF family protein n=1 Tax=Symploca sp. SIO2C1 Ta... [more]
UPI001A069DE24.740e-1637.33YdcF family protein n=1 Tax=Synechococcales cyanob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1021contigH-akashiwo_Contig1021:330181..330645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1487953.JMKF01000065_gene4593
PFAMsDUF218
Model size465
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.73e-19
EggNOG OGsCOG1434@1|root,COG1434@2|Bacteria,1G5VB@1117|Cyanobacteria,1HA49@1150|Oscillatoriales
DescriptionPFAM DUF218 domain
Cds size465
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387054.167354-CDS-H-akashiwo_Contig1021:330180..3306451681387054.167354-CDS-H-akashiwo_Contig1021:330180..330645Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1021 330181..330645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1021.12.1prot_H-akashiwo_Contig1021.12.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1021 330181..330645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1021.12.1

>prot_H-akashiwo_Contig1021.12.1 ID=prot_H-akashiwo_Contig1021.12.1|Name=mRNA_H-akashiwo_Contig1021.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=155bp
MQLKTAIIILGGEKEREIKALELYQTIKKEHPDFPFKAIISSCEASDQDI
YQLTRGLTPDYNGDYGIIIDRRAVDTVTNFTRSFGILKQLEINKVIIATS
KYHMRRAFWIGMIILGTKGIHIEKLEVNQGRKLGQESLFKVVRDCIRAYI
WLFLG
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mRNA from alignment at H-akashiwo_Contig1021:330181..330645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1021.12.1 ID=mRNA_H-akashiwo_Contig1021.12.1|Name=mRNA_H-akashiwo_Contig1021.12.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=465bp|location=Sequence derived from alignment at H-akashiwo_Contig1021:330181..330645+ (Heterosigma akashiwo CCMP452)
ATGCAGCTAAAAACGGCAATTATCATCCTTGGTGGTGAAAAGGAAAGAGA AATTAAGGCTTTGGAGCTGTATCAGACCATCAAAAAGGAACATCCAGATT TTCCGTTCAAGGCAATCATTTCATCTTGTGAAGCATCAGATCAAGATATT TACCAGCTGACCCGTGGGTTAACTCCTGACTATAATGGTGATTATGGAAT AATCATTGATCGGAGAGCTGTTGATACAGTCACGAACTTCACCAGGTCTT TTGGAATCCTCAAACAATTGGAGATCAACAAAGTTATCATTGCAACCTCA AAGTATCACATGAGACGCGCTTTTTGGATTGGTATGATCATTTTGGGGAC CAAAGGAATACATATCGAAAAGTTAGAAGTTAATCAGGGAAGGAAATTGG GCCAAGAATCTTTGTTCAAGGTTGTGAGAGATTGCATACGAGCTTACATT TGGCTTTTCCTCGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1021:330181..330645+

>mRNA_H-akashiwo_Contig1021.12.1 ID=mRNA_H-akashiwo_Contig1021.12.1|Name=mRNA_H-akashiwo_Contig1021.12.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=465bp|location=Sequence derived from alignment at H-akashiwo_Contig1021:330181..330645+ (Heterosigma akashiwo CCMP452)
ATGCAGCTAAAAACGGCAATTATCATCCTTGGTGGTGAAAAGGAAAGAGA
AATTAAGGCTTTGGAGCTGTATCAGACCATCAAAAAGGAACATCCAGATT
TTCCGTTCAAGGCAATCATTTCATCTTGTGAAGCATCAGATCAAGATATT
TACCAGCTGACCCGTGGGTTAACTCCTGACTATAATGGTGATTATGGAAT
AATCATTGATCGGAGAGCTGTTGATACAGTCACGAACTTCACCAGGTCTT
TTGGAATCCTCAAACAATTGGAGATCAACAAAGTTATCATTGCAACCTCA
AAGTATCACATGAGACGCGCTTTTTGGATTGGTATGATCATTTTGGGGAC
CAAAGGAATACATATCGAAAAGTTAGAAGTTAATCAGGGAAGGAAATTGG
GCCAAGAATCTTTGTTCAAGGTTGTGAGAGATTGCATACGAGCTTACATT
TGGCTTTTCCTCGGC
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