mRNA_H-akashiwo_Contig1021.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1021.1.1
Unique NamemRNA_H-akashiwo_Contig1021.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Match: A0A482UJQ7_9ARCH (Flavoprotein domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UJQ7_9ARCH)

HSP 1 Score: 116 bits (291), Expect = 7.650e-30
Identity = 60/96 (62.50%), Postives = 68/96 (70.83%), Query Frame = 2 
Query:  323 LVVAPLSANTLAKAAAGLADNLVAAVLRAWDFGAGKPCVLAPAMNTSMWAHPLTAHQLRGLEALGCAVAEPVAKTLACGDTGKGAMAAPADVARLV 610
            +V+APLSANTLAK AAGL DNL+  VLRAWDF  GKP ++APAMNT MW HP TA  L  L+ LG  V  P+AK LACGD G GAMA   D+   V
Sbjct:    1 MVIAPLSANTLAKVAAGLCDNLLTCVLRAWDFDGGKPILVAPAMNTHMWTHPFTAKHLAVLQELGMHVIPPIAKRLACGDVGHGAMAPVEDIVEAV 96
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Match: A0A7R9VS17_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VS17_9CHLO)

HSP 1 Score: 118 bits (295), Expect = 4.510e-29
Identity = 67/106 (63.21%), Postives = 75/106 (70.75%), Query Frame = 2 
Query:  299 RWLAVGDALVVAPLSANTLAKAAAGLADNLVAAVLRAWDFGAGK--PCVLAPAMNTSMWAHPLTAHQLRGLEALGCAVAEPVAKTLACGDTGKGAMAAPADVARLV 610
            RW    D LVVAPLSANTLAK AAGL+DNL+  V RAW++ AG   P +L PAMNT MW  PLTA QL  ++ALG  V  PV+K LACGD G GAMAAP DVA  V
Sbjct:   84 RWA---DVLVVAPLSANTLAKLAAGLSDNLLTCVARAWNWRAGVRLPLLLVPAMNTLMWESPLTARQLAAIQALGAVVVPPVSKRLACGDVGAGAMAAPGDVAAAV 186
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BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Match: A0A7S1X7S5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X7S5_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 3.830e-28
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 2 
Query:  317 DALVVAPLSANTLAKAAAGLADNLVAAVLRAWDFGAGKPCVLAPAMNTSMWAHPLTAHQLRGLEALGCAVAEPVAKTLACGDTGKGAMAAPADVA 601
            D LV+APLSANTLAK  +G+ DNL+ +V+RAWDFG  KP ++APAMNT MW  P TA QL  L  LG  V EPV+KTLACGDTGKGA+  P ++A
Sbjct:   87 DLLVIAPLSANTLAKITSGVCDNLLTSVVRAWDFG--KPMLVAPAMNTFMWDSPFTAKQLNVLRELGVHVMEPVSKTLACGDTGKGALPPPLEIA 179
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BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Match: A0A7S3D743_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D743_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 8.020e-28
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 2 
Query:  317 DALVVAPLSANTLAKAAAGLADNLVAAVLRAWDFGAGKPCVLAPAMNTSMWAHPLTAHQLRGLEALGCAVAEPVAKTLACGDTGKGAMAAPA 592
            DA+VVAPLSANTLAK A G+AD+L++ VLRAWDF   +PCVLAPAMNT+MW HP+TA +L  +   G  V  PVAK LACGD G GAM  PA
Sbjct:   84 DAIVVAPLSANTLAKMAFGMADSLLSCVLRAWDFS--QPCVLAPAMNTAMWQHPVTAEKLDRVRQYGAVVVMPVAKKLACGDVGVGAMEKPA 173
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BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Match: A0A7S3D7N0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D7N0_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 8.230e-28
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 2 
Query:  317 DALVVAPLSANTLAKAAAGLADNLVAAVLRAWDFGAGKPCVLAPAMNTSMWAHPLTAHQLRGLEALGCAVAEPVAKTLACGDTGKGAMAAPA 592
            DA+VVAPLSANTLAK A G+AD+L++ VLRAWDF   +PCVLAPAMNT+MW HP+TA +L  +   G  V  PVAK LACGD G GAM  PA
Sbjct:   85 DAIVVAPLSANTLAKMAFGMADSLLSCVLRAWDFS--QPCVLAPAMNTAMWQHPVTAEKLDRVRQYGAVVVMPVAKKLACGDVGVGAMEKPA 174
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BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Match: A0A2A9MLT5_9APIC (Flavoprotein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MLT5_9APIC)

HSP 1 Score: 115 bits (288), Expect = 8.830e-28
Identity = 63/104 (60.58%), Postives = 71/104 (68.27%), Query Frame = 2 
Query:  299 RWLAVGDALVVAPLSANTLAKAAAGLADNLVAAVLRAWDFGAGKPCVLAPAMNTSMWAHPLTAHQLRGLEALGCAVAEPVAKTLACGDTGKGAMAAPADVARLV 610
            RW    D LV+APLSAN+LAK A GL DNLV  V RAW F   KPCV+ PAMNT MW HPLT  QL  L   G  V +PV+KTLACGDTG GA+  P +VA+ V
Sbjct:  160 RWA---DVLVIAPLSANSLAKLAHGLCDNLVTCVARAWSFA--KPCVVFPAMNTLMWEHPLTTQQLDTLRGFGVKVVDPVSKTLACGDTGTGALPPPKEVAQAV 258
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BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Match: A0A061R429_9CHLO (Phosphopantothenoylcysteine decarboxylase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R429_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 2.300e-27
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 2 
Query:  317 DALVVAPLSANTLAKAAAGLADNLVAAVLRAWDFGAGKPCVLAPAMNTSMWAHPLTAHQLRGLEALGCAVAEPVAKTLACGDTGKGAMAAPADVAR 604
            D ++VAPLSANTLAK + GL DNL+ +++RAWDF   KP V+APAMNT MW +P T   L  LE+LG AV  PV+K LACGD G+GA+A P ++AR
Sbjct:   93 DLMIVAPLSANTLAKMSNGLCDNLLTSIIRAWDFA--KPLVVAPAMNTQMWDNPFTRRHLETLESLGVAVVPPVSKALACGDVGQGALADPLEIAR 186
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Match: A0A250X869_9CHLO (Flavoprotein domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X869_9CHLO)

HSP 1 Score: 113 bits (282), Expect = 2.990e-27
Identity = 62/116 (53.45%), Postives = 77/116 (66.38%), Query Frame = 2 
Query:  299 RWLAVGDALVVAPLSANTLAKAAAGLADNLVAAVLRAWDFGAGKPCVLAPAMNTSMWAHPLTAHQLRGLEALGCAV------AEPVAKTLACGDTGKGAMAAPADVARLVHGKVEA 628
            RW    D LV+APLSANTLAK + GL DNL+  VLRAWD+ +G P V+APAMNT MW+HPLTA QL  L++ G  V        PV+K LACGD G GAMA   ++ + V   ++A
Sbjct:   94 RWA---DILVLAPLSANTLAKVSTGLCDNLLTCVLRAWDYQSGAPLVVAPAMNTMMWSHPLTAEQLEALQSFGAGVPGTVTVVPPVSKKLACGDVGVGAMAPVTEIVKAVEVALQA 206
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Match: A0A2P6TJW4_CHLSO (G8 domain-containing n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TJW4_CHLSO)

HSP 1 Score: 118 bits (295), Expect = 7.110e-27
Identity = 65/101 (64.36%), Postives = 71/101 (70.30%), Query Frame = 2 
Query:  299 RWLAVGDALVVAPLSANTLAKAAAGLADNLVAAVLRAWDFGAGKPCVLAPAMNTSMWAHPLTAHQLRGLEALGCAVAEPVAKTLACGDTGKGAMAAPADVA 601
            RW    DA V+APLSANTLAKAA GL DNLV  V+RAWDFG  KP +LAPAMNT MW  P TA  L  + ALG  V  PV+K LACGD G G MAAP D+A
Sbjct: 1640 RWA---DAFVIAPLSANTLAKAANGLCDNLVTCVVRAWDFG--KPLLLAPAMNTFMWDSPFTAQHLAAVTALGATVVPPVSKRLACGDVGTGGMAAPEDIA 1735
[Close]
BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Match: A0A2V0NZJ8_9CHLO (Phosphopantothenoylcysteine decarboxylase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NZJ8_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 7.460e-27
Identity = 65/106 (61.32%), Postives = 71/106 (66.98%), Query Frame = 2 
Query:  299 RWLAVGDALVVAPLSANTLAKAAAGLADNLVAAVLRAWDFGAGKPCVLAPAMNTSMWAHPLTAHQLRGLEALGCAVAEPVAKTLACGDTGKGAMAAPADVARLVHG 616
            RW    DALV+APLSANTLAKAA GL DNL+  V+RAWDF   +P ++APAMNT MW  P T   L  L  LG AV  PV K LACGD G GAMAAP  VA  V G
Sbjct:  114 RWA---DALVIAPLSANTLAKAAGGLCDNLLTCVVRAWDFD--RPLLVAPAMNTLMWDSPFTRRHLDALAQLGVAVVPPVGKRLACGDVGLGAMAAPEAVAAAVAG 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1021.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482UJQ7_9ARCH7.650e-3062.50Flavoprotein domain-containing protein n=1 Tax=arc... [more]
A0A7R9VS17_9CHLO4.510e-2963.21Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S1X7S5_9CHLO3.830e-2863.16Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S3D743_9EUKA8.020e-2865.22Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S3D7N0_9EUKA8.230e-2865.22Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A2A9MLT5_9APIC8.830e-2860.58Flavoprotein n=1 Tax=Besnoitia besnoiti TaxID=9464... [more]
A0A061R429_9CHLO2.300e-2759.38Phosphopantothenoylcysteine decarboxylase n=2 Tax=... [more]
A0A250X869_9CHLO2.990e-2753.45Flavoprotein domain-containing protein n=1 Tax=Chl... [more]
A0A2P6TJW4_CHLSO7.110e-2764.36G8 domain-containing n=1 Tax=Chlorella sorokiniana... [more]
A0A2V0NZJ8_9CHLO7.460e-2761.32Phosphopantothenoylcysteine decarboxylase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1021contigH-akashiwo_Contig1021:11955..12699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog13333.ERN03787
PFAMsFlavoprotein
Model size661
Max annot lvl35493|Streptophyta
KEGG rclassRC00822
KEGG koko:K01598
KEGG ReactionR03269
KEGG Pathwayko00770,ko01100,map00770,map01100
KEGG ModuleM00120
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004633,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009628,GO:0009651,GO:0009987,GO:0010181,GO:0015936,GO:0015937,GO:0016829,GO:0016830,GO:0016831,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0032553,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0036094,GO:0042538,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046483,GO:0048037,GO:0050662,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue1.15e-09
EggNOG OGsCOG0452@1|root,KOG0672@2759|Eukaryota,37M5J@33090|Viridiplantae,3GC76@35493|Streptophyta
EC4.1.1.36
Descriptionphosphopantothenoylcysteine
Cds size210
COG categoryDP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387054.0033998-CDS-H-akashiwo_Contig1021:11954..121641681387054.0033998-CDS-H-akashiwo_Contig1021:11954..12164Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1021 11955..12164 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387054.0179703-UTR-H-akashiwo_Contig1021:12164..124051681387054.0179703-UTR-H-akashiwo_Contig1021:12164..12405Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1021 12165..12405 -
1681387054.0259252-UTR-H-akashiwo_Contig1021:12489..126991681387054.0259252-UTR-H-akashiwo_Contig1021:12489..12699Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1021 12490..12699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1021.1.1prot_H-akashiwo_Contig1021.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1021 11955..12164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1021.1.1

>prot_H-akashiwo_Contig1021.1.1 ID=prot_H-akashiwo_Contig1021.1.1|Name=mRNA_H-akashiwo_Contig1021.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=70bp
MNTSMWAHPLTAHQLRGLEALGCAVAEPVAKTLACGDTGKGAMAAPADVA
RLVHGKVEAYLAQQAHAHAD
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mRNA from alignment at H-akashiwo_Contig1021:11955..12699-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1021.1.1 ID=mRNA_H-akashiwo_Contig1021.1.1|Name=mRNA_H-akashiwo_Contig1021.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=745bp|location=Sequence derived from alignment at H-akashiwo_Contig1021:11955..12699- (Heterosigma akashiwo CCMP452)
CCCCCGCCCCCGCCCGTGGCTGGCGCAGACGAGGGCGGTTCGGCACGGCC
GCGGATCCTCCTGGCCCTGACGGGCAGCGTGGCGACCGTGAAGGGGCCGG
CGCTGGCGCTGCTGCTGGCGGGCTTCGCGGAGGTGAAGGTGCTGCTCACG
GACAAGAGCGAGCACTTCTGGAACCAGGCGCGGCACTACGACCCTGAGAG
CTGGGCGAAGGTGCAGGCGGCGCTGAAGGGCGGCCCGGGGGCGGGCGCGG
CGGCGGGCGGGGCGCGCGCGGCGGGGCCGGGCGTCCGGGCGCAGCTGGGG
CGGGCGCGGGCGCTGGGGCGGTGGAGCGCGCGCGACGCGGACGAGTGGGC
GCGTGGCGGTTGCCGGGCGACGCGGTGCTGCACGCTGGCTCGCTGTGGGC
GACGCGCTGGTCGTGGCCCCGCTCTCGGCCAACACGCTGGCCAAGGCGGC
GGCCGGGCTGGCGGACAACCTGGTGGCCGCCGTGCTGCGCGCGTGGGACT
TCGGGGCGGGCAAGCCCTGCGTGCTGGCCCCGGCCATGAACACCTCGATG
TGGGCGCACCCGCTGACGGCGCACCAGCTGCGCGGGCTGGAGGCGCTGGG
CTGCGCGGTGGCCGAGCCGGTGGCGAAGACGCTGGCCTGCGGGGACACGG
GCAAGGGCGCCATGGCGGCCCCCGCGGACGTCGCGCGGCTGGTGCACGGG
AAGGTCGAGGCCTACCTGGCGCAGCAGGCCCACGCCCATGCAGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1021:11955..12699-

>mRNA_H-akashiwo_Contig1021.1.1 ID=mRNA_H-akashiwo_Contig1021.1.1|Name=mRNA_H-akashiwo_Contig1021.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=210bp|location=Sequence derived from alignment at H-akashiwo_Contig1021:11955..12699- (Heterosigma akashiwo CCMP452)
ATGAACACCTCGATGTGGGCGCACCCGCTGACGGCGCACCAGCTGCGCGG
GCTGGAGGCGCTGGGCTGCGCGGTGGCCGAGCCGGTGGCGAAGACGCTGG
CCTGCGGGGACACGGGCAAGGGCGCCATGGCGGCCCCCGCGGACGTCGCG
CGGCTGGTGCACGGGAAGGTCGAGGCCTACCTGGCGCAGCAGGCCCACGC
CCATGCAGAC
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