mRNA_H-akashiwo_Contig102.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig102.6.1
Unique NamemRNA_H-akashiwo_Contig102.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Match: A0A7S3YGD0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGD0_HETAK)

HSP 1 Score: 130 bits (326), Expect = 1.900e-36
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 2
Query:    2 GAALHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV 187
            GAALHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV
Sbjct:  133 GAALHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV 194          
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Match: A0A7I8KL84_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KL84_SPIIN)

HSP 1 Score: 83.6 bits (205), Expect = 2.690e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 2
Query:    2 GAALHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV 187
             + LH+LYP  IT AL+ +LH FD+ LPGFIS  GLLHGVETRTSAPVQITR  ++ ES S+
Sbjct:  586 ASKLHELYPARITQALQSSLHMFDKELPGFISKDGLLHGVETRTSAPVQITRHADTFESTSL 647          
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Match: A0A6A0A9N3_HAELA (FAD_binding_2 domain-containing protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A9N3_HAELA)

HSP 1 Score: 77.0 bits (188), Expect = 7.830e-17
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 2
Query:    2 GAALHDLYPPFITDALKDALHKFDQWLPGFIS-PQGLLHGVETRTSAPVQITR-DGESLESVSV 187
             AALHDLYPP ++DAL+ AL +FD+ L GF S P+GLLHGVETRTS+PV++ R  GE ++S SV
Sbjct:   46 SAALHDLYPPALSDALQAALRRFDRNLRGFASCPEGLLHGVETRTSSPVKVDRLPGEDMQSCSV 109          
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Match: A0A4Y7KLB8_PAPSO (FAD_binding_3 domain-containing protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7KLB8_PAPSO)

HSP 1 Score: 82.0 bits (201), Expect = 9.350e-17
Identity = 37/62 (59.68%), Postives = 51/62 (82.26%), Query Frame = 2
Query:    2 GAALHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV 187
             A LH+L+P  +T+AL+ A+  F++ LPGFIS  GLLHGVETRTS+P+QI+RDG++ ESVS+
Sbjct:  573 AAKLHELFPTHVTEALQHAISMFERELPGFISRDGLLHGVETRTSSPIQISRDGDTYESVSL 634          
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Match: A0A2G5DQZ5_AQUCA (Pyr_redox_2 domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5DQZ5_AQUCA)

HSP 1 Score: 80.9 bits (198), Expect = 2.380e-16
Identity = 38/62 (61.29%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 GAALHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV 187
             AALH+L+P  +T AL+ ++ KFD+ LPGFIS + LLHGVETRTS+PVQI+RDG + ES S+
Sbjct:  568 AAALHELFPAQLTKALQRSISKFDRELPGFISSEALLHGVETRTSSPVQISRDGNTYESTSL 629          
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Match: A0A6A3CFX3_HIBSY (Putative endonuclease or glycosyl hydrolase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CFX3_HIBSY)

HSP 1 Score: 80.9 bits (198), Expect = 2.380e-16
Identity = 36/62 (58.06%), Postives = 51/62 (82.26%), Query Frame = 2
Query:    2 GAALHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV 187
             A+LH+L+P ++TDAL+ ++  FD+ LPGFIS + LLHGVETRTS+P+QI RDG + ES+S+
Sbjct:  594 AASLHELFPSYMTDALRYSISMFDRELPGFISKEALLHGVETRTSSPIQIPRDGATYESLSL 655          
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Match: A0A200QC05_9MAGN (Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QC05_9MAGN)

HSP 1 Score: 80.5 bits (197), Expect = 3.250e-16
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    2 GAALHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV 187
             A LH+L+P  +T+AL+ ++  FD+ LPGFIS   LLHGVETRTS+PVQI+RDG++ ESVS+
Sbjct:  586 AANLHELFPAHVTEALQHSISMFDRELPGFISKDALLHGVETRTSSPVQISRDGDTYESVSL 647          
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Match: A0A6P5ZAI9_DURZI (uncharacterized protein LOC111298971 isoform X1 n=2 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZAI9_DURZI)

HSP 1 Score: 80.5 bits (197), Expect = 3.260e-16
Identity = 36/62 (58.06%), Postives = 51/62 (82.26%), Query Frame = 2
Query:    2 GAALHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV 187
             A+LH+L+P ++TDAL  ++  FD+ LPGFIS + LLHGVETRTS+P+QI RDG++ ES+S+
Sbjct:  594 AASLHELFPVYMTDALCYSISMFDKELPGFISKEALLHGVETRTSSPIQIPRDGDTCESISL 655          
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Match: V4UKW5_CITCL (FAD_binding_3 domain-containing protein n=5 Tax=Citrus TaxID=2706 RepID=V4UKW5_CITCL)

HSP 1 Score: 79.7 bits (195), Expect = 6.070e-16
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 2
Query:    2 GAALHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV 187
             A+LH+L+P  +TDALK ++  FD+ LPGFIS  GLLHGVETRTS P+QI R+ E+ ES S+
Sbjct:  587 AASLHELFPTHLTDALKHSISMFDEELPGFISDTGLLHGVETRTSCPLQIPRNNETCESTSL 648          
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Match: A0A0A9D7B1_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9D7B1_ARUDO)

HSP 1 Score: 79.7 bits (195), Expect = 6.080e-16
Identity = 34/59 (57.63%), Postives = 50/59 (84.75%), Query Frame = 2
Query:   11 LHDLYPPFITDALKDALHKFDQWLPGFISPQGLLHGVETRTSAPVQITRDGESLESVSV 187
            LH+L+PP+IT+AL+ ++   D+ +PGF+S + LLHGVETRTS+P+QI+RDGE+ ES S+
Sbjct:  606 LHELFPPYITEALQQSIIMIDKEMPGFVSKEALLHGVETRTSSPLQISRDGETYESTSL 664          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig102.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3YGD0_HETAK1.900e-36100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7I8KL84_SPIIN2.690e-1764.52Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A6A0A9N3_HAELA7.830e-1762.50FAD_binding_2 domain-containing protein (Fragment)... [more]
A0A4Y7KLB8_PAPSO9.350e-1759.68FAD_binding_3 domain-containing protein n=1 Tax=Pa... [more]
A0A2G5DQZ5_AQUCA2.380e-1661.29Pyr_redox_2 domain-containing protein n=2 Tax=Thal... [more]
A0A6A3CFX3_HIBSY2.380e-1658.06Putative endonuclease or glycosyl hydrolase n=2 Ta... [more]
A0A200QC05_9MAGN3.250e-1659.68Pyridine nucleotide-disulfide oxidoreductase n=1 T... [more]
A0A6P5ZAI9_DURZI3.260e-1658.06uncharacterized protein LOC111298971 isoform X1 n=... [more]
V4UKW5_CITCL6.070e-1659.68FAD_binding_3 domain-containing protein n=5 Tax=Ci... [more]
A0A0A9D7B1_ARUDO6.080e-1657.63Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig102contigH-akashiwo_Contig102:90414..91033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size192
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387052.832446-CDS-H-akashiwo_Contig102:90415..905011681387052.832446-CDS-H-akashiwo_Contig102:90415..90501Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 90416..90501 -
1681387052.8432167-CDS-H-akashiwo_Contig102:90930..910331681387052.8432167-CDS-H-akashiwo_Contig102:90930..91033Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 90931..91033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig102.6.1prot_H-akashiwo_Contig102.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig102 90416..91033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig102.6.1

>prot_H-akashiwo_Contig102.6.1 ID=prot_H-akashiwo_Contig102.6.1|Name=mRNA_H-akashiwo_Contig102.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=63bp
WGSAPRPVPALHHGRPQGCAAQVRPVAPGLHLTAGASSWCRDKNKCARSD
HPGWGVAGKCQCA
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mRNA from alignment at H-akashiwo_Contig102:90414..91033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig102.6.1 ID=mRNA_H-akashiwo_Contig102.6.1|Name=mRNA_H-akashiwo_Contig102.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=620bp|location=Sequence derived from alignment at H-akashiwo_Contig102:90414..91033- (Heterosigma akashiwo CCMP452)
TGGGGCAGCGCTCCACGACCTGTACCCGCCCTTCATCACGGACGCCCTCA AGGATGCGCTGCACAAGTTCGACCAGTGGCTCCCGGGCTTCATCTCACCG CAGGTGCTTGCGGGATGGGGAATAGGAGGAGGTATCAAAACCGAGGTCCA CCACCTATGTCCCATACATCACAGTGTGCTGCTTGGTGGATTTCATGCCA CCCCCCTCCCCCCCCCCCCCCCCCAGCAATTTTCATTATGCAATGTGCTG CTCCCACATCCTGCATCGCAACCAATGTCTTCTTACACACGCCATGGTAT CTCTCTTTACCAAGCAATGTGGTCTCATGGTGTTTGGGCCCCGCTTCCGA CAACAACCTACTTCCTTCGATGAGTGCATTCATCTCCACCCTGCAATGCC TAGGCACGGTAATGGCAAAACTGTTGTCTTTTTCACCCTCCAGAACAATT ATTGTATCATCACAAAACAAGCCAACGGTTTCAGCTGCATGCAGCACCGC TGTTTTGATGTGCATCCTATATTTTCTGCCAGGGGCTTCTTCATGGTGTA GAGACAAGAACAAGTGCGCCCGTTCAGATCACCCGGGATGGGGAGTCGCT GGAAAGTGTCAGTGTGCAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig102:90414..91033-

>mRNA_H-akashiwo_Contig102.6.1 ID=mRNA_H-akashiwo_Contig102.6.1|Name=mRNA_H-akashiwo_Contig102.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=189bp|location=Sequence derived from alignment at H-akashiwo_Contig102:90414..91033- (Heterosigma akashiwo CCMP452)
TGGGGCAGCGCTCCACGACCTGTACCCGCCCTTCATCACGGACGCCCTCA
AGGATGCGCTGCACAAGTTCGACCAGTGGCTCCCGGGCTTCATCTCACCG
CAGGGGCTTCTTCATGGTGTAGAGACAAGAACAAGTGCGCCCGTTCAGAT
CACCCGGGATGGGGAGTCGCTGGAAAGTGTCAGTGTGCA
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