mRNA_H-akashiwo_Contig102.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig102.3.1
Unique NamemRNA_H-akashiwo_Contig102.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Match: A0A7S3Y9G6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9G6_HETAK)

HSP 1 Score: 358 bits (919), Expect = 3.960e-124
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 
Query:    7 VLVLTSGLALLVVVHLTDVYYGAFLEFWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGVGPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 537
            VLVLTSGLALLVVVHLTDVYYGAFLEFWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGVGPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY
Sbjct:   34 VLVLTSGLALLVVVHLTDVYYGAFLEFWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGVGPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 210
[Close]
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Match: D8LR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR81_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.040e-37
Identity = 68/152 (44.74%), Postives = 91/152 (59.87%), Query Frame = 1 
Query:   82 EFWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGVGPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 537
            EFW +Q+P+ A +  V    G +CR +CP D  GYI+T ++SWFKVNYT K    AAYLVPL   P P       L L   +W  L     +++P+RE     ML FN LDRPEDRPH+LEW +  N+ PG + ++ F  +F  + QRDL+Y
Sbjct:  172 EFWVLQVPKLACMIAVSILAGSLCRYFCPADDTGYIMTSKNSWFKVNYTRKVQHFAAYLVPLLFRPSPDCHCTGTLELSWGVWVTLIGFLVMIKPIREAVPLFMLQFNGLDRPEDRPHTLEWIIKYNIWPGEIMIVFFAHLFRQSYQRDLVY 323
[Close]
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Match: A0A5D6Y2P1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2P1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 7.770e-37
Identity = 71/151 (47.02%), Postives = 93/151 (61.59%), Query Frame = 1 
Query:   85 FWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGVGPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 537
            FW   LP+   +  V   GGLVCR +C VD  GY++T+R S FKVNYT K  +LAAYL+PL + P         L L    +  L    AL++P+RER    ML FN+LDRPEDRPH+L+W VA N+ PG   +L F+ +FA T Q DL++
Sbjct:  134 FWLFLLPKLVAMMAVSTLGGLVCRFFCIVDDAGYVITERSSAFKVNYTRKLQLLAAYLIPLLVKPDAACACNGALELAWGDFVTLLGFLALIKPVRERATFFMLQFNSLDRPEDRPHTLKWIVAGNVFPGLFVLLFFRWLFATTTQADLVF 284
[Close]
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Match: D0NMZ2_PHYIT (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=D0NMZ2_PHYIT)

HSP 1 Score: 140 bits (353), Expect = 1.110e-36
Identity = 73/155 (47.10%), Postives = 98/155 (63.23%), Query Frame = 1 
Query:   82 EFWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGV---GPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 537
             FW   LP+  ++ GV   GG++CR +C VD  GY++T+R+S FKVNYT K  +LAAYLVPL + P         GP LAL    +  L     L++P+RER    ML FN+LDRPEDRPH+L+W VA N+ PG   +L F+ +FA T Q DL++
Sbjct:  151 SFWFFLLPKVLIMMGVSTLGGIICRFFCIVDDAGYVITERNSVFKVNYTRKLQLLAAYLVPLLVKPDEEACAACNGP-LALAWGDFVTLLCFLLLIKPIRERSTLFMLQFNSLDRPEDRPHTLKWIVAGNVFPGLFVLLFFRWLFARTTQSDLVF 304
[Close]
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Match: A0A2D4BT21_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BT21_PYTIN)

HSP 1 Score: 140 bits (352), Expect = 1.640e-36
Identity = 77/174 (44.25%), Postives = 103/174 (59.20%), Query Frame = 1 
Query:   16 LTSGLALLVVVHLTDVYYGAFLEFWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGVGPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 537
            L   LAL+V+  +T         FW   LP+   + GV   GG++CR +C VD  GY+LT+R+S FKVNYT K  +LAAYL+PLAL P         L L    +  L A  AL++P+RER    ML FN+LDRPEDRPH+L+W VA N+ P    +L F+ +F  T Q  L++
Sbjct:  134 LVFALALVVLTCVTKPSLWTNGLFWLSMLPKMVAMLGVSTLGGIICRLFCIVDDAGYVLTERNSKFKVNYTRKLQLLAAYLIPLALKPDAACDCDGALELAWGDFVTLLAFLALIKPVRERSTFFMLQFNSLDRPEDRPHTLKWLVAGNVFPALFVLLLFRWLFDRTTQSALVF 307
[Close]
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Match: A0A8K1FGD0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGD0_PYTOL)

HSP 1 Score: 139 bits (350), Expect = 2.890e-36
Identity = 68/151 (45.03%), Postives = 95/151 (62.91%), Query Frame = 1 
Query:   85 FWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGVGPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 537
            FW   LP+  V+ GV   GG++CR +C VD  GY++T+R+S FKVNYT K  +LAAY++PL + P         L L    +  L A  AL++P+RER    ML FN+LDRPEDRPH+L+W VA N+ P    +L F+ +F  T Q +L++
Sbjct:  151 FWMSLLPKLVVMMGVSTLGGIICRLFCIVDDAGYVITERNSKFKVNYTRKFQLLAAYMIPLVIKPEDACKCNGALELAWGDFVTLLAFLALIKPIRERSTFFMLQFNSLDRPEDRPHTLKWLVAGNIFPSLFVLLFFRYLFERTTQSELVF 301
[Close]
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Match: A0A3R8CSH1_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R8CSH1_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.460e-36
Identity = 73/158 (46.20%), Postives = 99/158 (62.66%), Query Frame = 1 
Query:   79 LEFWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPP-----PPRRGVGPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 537
            + FW   LP+  ++ GV   GG++CR +C VD  GY++T+R S FKVNYT K  +LAAYLVPL + P     P   G    LAL    +  LF    L++P+RER    ML FN+LDRPEDRPH+L+W VA N+ PG   +L F+ +FA T Q +L++
Sbjct:  138 MSFWLFLLPKVLLMMGVSTLGGIICRFFCIVDDAGYVITERSSVFKVNYTRKFQLLAAYLVPLLVKPDEELCPLCNG---SLALAWGDFVTLFCFLLLIKPIRERSTLFMLQFNSLDRPEDRPHTLKWIVAGNVFPGLFVLLFFRWLFARTTQSNLVF 292
[Close]
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Match: A0A484DY97_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DY97_BRELC)

HSP 1 Score: 139 bits (349), Expect = 3.650e-36
Identity = 72/155 (46.45%), Postives = 98/155 (63.23%), Query Frame = 1 
Query:   82 EFWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGV---GPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 537
             FW   LP+  ++ GV   GG++CR +C VD  GY++T+R+S FKVNYT K  +LAAYLVPL + P         GP +AL    +  L     L++P+RER    ML FN+LDRPEDRPH+L+W VA N+ PG   +L F+ +FA T Q DL++
Sbjct:  142 SFWFYLLPKVLIMMGVSTLGGIICRFFCIVDEAGYVITERNSAFKVNYTRKFQLLAAYLVPLLVKPDEESCPACSGP-VALAWGDFVTLLCFLLLIKPIRERSTLFMLQFNSLDRPEDRPHTLKWIVAGNIFPGLFVLLFFRWLFARTTQSDLVF 295
[Close]
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Match: K3WMH4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMH4_GLOUD)

HSP 1 Score: 137 bits (345), Expect = 1.220e-35
Identity = 68/151 (45.03%), Postives = 93/151 (61.59%), Query Frame = 1 
Query:   85 FWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGVGPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 537
            FW   +P+  V+ GV   GG+VCR +C VD  GY++T+R+S FKVNYT K  +LAAYL+PL   P         L L    +  L     L++P+RE+    ML FN+LDRPEDRPH+L+W VA N+ PG   +L F+ +F  T Q DL++
Sbjct:  137 FWFFLIPKIVVMMGVSTIGGIVCRFFCIVDESGYVITERNSTFKVNYTRKFQLLAAYLIPLLAKPDDSCNCNGPLELAWGDFVTLLGFLVLIKPIREKSTFFMLQFNSLDRPEDRPHTLKWIVAGNVFPGLFVLLFFRWLFERTTQSDLVF 287
[Close]
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Match: A0A2D4BHG4_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHG4_PYTIN)

HSP 1 Score: 140 bits (352), Expect = 3.810e-35
Identity = 77/174 (44.25%), Postives = 103/174 (59.20%), Query Frame = 1 
Query:   16 LTSGLALLVVVHLTDVYYGAFLEFWAVQLPRAAVLWGVFAAGGLVCRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGVGPGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWAVALNLLPGFLAVLAFQQVFALTGQRDLLY 537
            L   LAL+V+  +T         FW   LP+   + GV   GG++CR +C VD  GY+LT+R+S FKVNYT K  +LAAYL+PLAL P         L L    +  L A  AL++P+RER    ML FN+LDRPEDRPH+L+W VA N+ P    +L F+ +F  T Q  L++
Sbjct:  984 LVFALALVVLTCVTKPSLWTNGLFWLSMLPKLVAMLGVSTLGGIICRLFCIVDDAGYVLTERNSKFKVNYTRKLQLLAAYLIPLALKPDAACDCDGALELAWGDFVTLLAFLALIKPVRERSTFFMLQFNSLDRPEDRPHTLKWLVAGNVFPALFVLLLFRWLFDRTTQSALVF 1157
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig102.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y9G6_HETAK3.960e-124100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8LR81_ECTSI1.040e-3744.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5D6Y2P1_9STRA7.770e-3747.02Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
D0NMZ2_PHYIT1.110e-3647.10Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
A0A2D4BT21_PYTIN1.640e-3644.25Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1FGD0_PYTOL2.890e-3645.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R8CSH1_9STRA3.460e-3646.20Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A484DY97_BRELC3.650e-3646.45Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
K3WMH4_GLOUD1.220e-3545.03Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BHG4_PYTIN3.810e-3544.25Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig102contigH-akashiwo_Contig102:20081..30656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LR81
Model size538
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons5
Evalue1.71e-38
EggNOG OGs2CMNQ@1|root,2QR22@2759|Eukaryota
Cds size537
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387053.1702192-CDS-H-akashiwo_Contig102:20080..201791681387053.1702192-CDS-H-akashiwo_Contig102:20080..20179Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 20081..20179 +
1681387053.1833382-CDS-H-akashiwo_Contig102:21475..215921681387053.1833382-CDS-H-akashiwo_Contig102:21475..21592Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 21476..21592 +
1681387053.1920383-CDS-H-akashiwo_Contig102:22451..225921681387053.1920383-CDS-H-akashiwo_Contig102:22451..22592Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 22452..22592 +
1681387053.2048347-CDS-H-akashiwo_Contig102:22955..230991681387053.2048347-CDS-H-akashiwo_Contig102:22955..23099Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 22956..23099 +
1681387053.2148283-CDS-H-akashiwo_Contig102:30619..306551681387053.2148283-CDS-H-akashiwo_Contig102:30619..30655Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 30620..30655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig102.3.1prot_H-akashiwo_Contig102.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig102 20081..30655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig102.3.1

>prot_H-akashiwo_Contig102.3.1 ID=prot_H-akashiwo_Contig102.3.1|Name=mRNA_H-akashiwo_Contig102.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=179bp
IQVLVLTSGLALLVVVHLTDVYYGAFLEFWAVQLPRAAVLWGVFAAGGLV
CRRYCPVDARGYILTQRHSWFKVNYTHKACVLAAYLVPLALPPPPRRGVG
PGLALLLDLWTVLFALAALVQPLRERWAPLMLMFNALDRPEDRPHSLEWA
VALNLLPGFLAVLAFQQVFALTGQRDLLY
back to top

mRNA from alignment at H-akashiwo_Contig102:20081..30656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig102.3.1 ID=mRNA_H-akashiwo_Contig102.3.1|Name=mRNA_H-akashiwo_Contig102.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=10576bp|location=Sequence derived from alignment at H-akashiwo_Contig102:20081..30656+ (Heterosigma akashiwo CCMP452)
ATTCAGGTGCTGGTGTTGACATCGGGCTTGGCGCTGCTGGTGGTTGTCCA
CCTTACGGATGTTTACTACGGTGCCTTTTTGGAATTTTGGGCTGTACAGG
TATGTGCAGCAGTGGTGTGTACACTGCAGAGTGAGTGTGCGTTTTAGTGT
GGTTGCTGCGAGGGTGGGTGGGGGGGGGGCAGGGGTGCAGTGACTGTGCC
ATTGTAAGAGCTATCACCGAGCTAGCAGTACCTTACGGCATACCATAATT
CATGACATGTAAACGGGATGGCAGCAAGACACTGTGGGCACTGATTTTGG
AGAGAGGCTCCAAAGAAAGAAAAGAGAGTCTGAGTGGTGCCATTTTCATC
AACTTTGGTGGTGCTCATCGGGAGGAATGTTTGCTTTGAAGATGGGCTGT
TGGTAATTTTTGGCCCCTATAGTAGGAGTCAGTTGTGAAGTGAGATGTTA
GCTGTCTGTGTAAGATAGCTGTACGCTCAGAAAAGCGATAGGCTTTTGCT
GCACTGAGTTTTATAGGAGCTTTTTGTCAATATAATATATATAATATAAT
TAGCATCTCATTTTCCTCTCTTGGAGTGCTCCTCTGGAGTTGAATCATTT
CACCTTGATCTGGAATATTGATCACTGCTAACAATCCAGCTTTTTATGTT
TTCTTCTTGTGCCACTGGTCGAAGGAGGCATGCATGCAGATATCCAACAA
CAGTTCAGCCAGTGAGATCTTATTCTTTTCTTGGTCATGGTCTCTCGTGG
GCGGCAGAGTTTAGTTTGTAAGTGCTTTCCATTTCCGAAGCTGTGCACTC
CAACACCTTTATATGGTGACGGGGTTTGGCTTGAGTTGGATGTGGCGCAG
CTCGCTTTGTCTGTTGCCTGGTTGGTCCCATTTTTCCTTTTTCCTCCCTT
TTTTTGTTTTGTTTTGTGTGTAGTAGAGGTACACCAGTCTGATAGAGCAT
TCACAGAAGACCGTGGAGATTGATGACTGTCATTTGGACACTGGATTAGG
ATTCATGAGCCACTGACAATAAGACCTGTGATATGAGGTCCACGTATCAG
CCTCACATCGGATTCATGAGCCACTGACAATGAGACCTGTGATATGAGGT
CCACGTAACAGCCTCGCATCGGTAAATCACAAGTCGGGCAGATTTATAGG
CAGCAGTGTTGTTGGAGGTGTACGTAGCATACAGCAATTCTTAGGATATG
GTAAGGCATGAATATGATAGGTATTTAGTATATATATATGTAATATTGAG
GGGCCGGGGGGGCACCATTCAAACCCTGTCCATACTGCACCCGGGCTCAA
CTGGCAGCAGTTTGGTGCTTTTCTCCACGTCCACGGCCGGCGCCGCCTTC
CGCCCCCCTCTCCGCTTGCGCCGCTGCCGCCGCTGCCCGCCGCAGCTCCC
ACGGGCGGCAGTGCTCTGGGGTGTGTTCGCGGCCGGAGGCCTGGTGTGCC
GCCGGTACTGCCCCGTGGACGCTCGCGGGTACATCCTCACCCAGCGCCAC
TCGTGGTTCAAGGTGGGGTTGGTCAAGGAGCAGCGGTGGCTGCTGGAGTT
TGAGCCCAATAAGGCTGGTCGTCAAGGAGAAGGAGGTGATGGAACTTCTG
GGTTTGACTAGATAGCTCACTGGGGGAACTGGTCTCAACACATACAAGCA
AGAGTTTCAGATGCCCGGAAGCGCTTGGGAGCAATCGGAAGAATGAACCA
AAACATGTTTGATGACAAAAGTATCATGAGGGCTTATTGCAAAGTTTTTG
GCGCTCAATGATTGGGTACATGGTAGCCTGGCCTAACCATTTGAAGAAGC
TTGATACTAGTAGATTTCAAGAGAGTGCTGTGGTATTCCTCTCCAACCCT
GGCCCTCCTGCTCCCCCCTTCGCTGAAAAGTAGGAAAGAACAGGCTGCCA
TTGGATCCAGCTGGATGGGCGATGGCGTGGTATAGCTCACAACTTGACAC
CAGAGTTTGATTACCCTTCTGCCCCAAGACCTTGGAGATCAGCTCGACTG
GCTGCAGCATGCTCAGCACCTTCATCAACTGAAACCAGTTCACCTTCCGC
CTAACTCCCTTGAAACTTTCAAAAGATGCCGTAGAGCTAGACTCCCAGGC
ATGTGGAGCGATCTTAAACACCCTGCTCTTCAACAGCAGCAAATATCAGG
ATACCTTCCTCTTAGGCGACAACTGTGTACACATATGGGCGATAATGGGT
GAAGTAGCAACAGTTACGATGAGCAACTTTCTGTACAGCACACGCAGGTG
CAGCACACGCGCCAGCAGCACTACTCCCACGGAGCACAGCGCCAGCAGCG
GCGGCGACAGCAGCAAACCGCCTGTGCCGCCGCCGCCGCCCCGCCCTGTT
ACCCCGGCCCGGCCCCGCCAGGTGAACTACACGCACAAGGCCTGCGTGCT
GGCGGCGTACCTGGTGCCGCTGGCGCTGCCCCCGCCGCCGCGGCGGGGCG
TGGGGCCCGGCCTGGCCCTGCTGCTGGACCTGTGGACCGTGCTCTTCGCC
CTTGCGGCCCTGGTGCGAGGGGCGGCGGCGGCAGCGGGGGCTAGGGCGGC
GGCGGCGGCGGCGGCGGCGGGGCGGGGCGGGGGTGTATGGCGGCGGCGGC
GGCGGCGGCGGCGGAGCGGGGGTGTCTCTGTGTGGAGGAGGGCTAGGATG
AGCCTGCCACTACGGCTAATGTACCACTCCCTCGCCAATGCTGTGGTTCT
GTGTCTCCCGGGGCTTGGGACTGAGATGTGGGAGTTCTGGTTTTGAGCAT
GTTGCAGGATCGCCTTTTCTTTCATCGGGCAGTAGTAGGGGGTGAGTTTG
TTGTGGGGCATGTGATATACATACCCTCCCTATAACACATATAGATGGTG
AAATCGATGGTGATGATCATGGCAGGTGCAGCCCCTGCGCGAGCGGTGGG
CGCCGCTGATGCTCATGTTCAACGCGCTGGACCGGCCCGAGGACCGCCCG
CACAGCCTGGAGTGGGCCGTGGCCCTCAACCTGCTGCCCGGCTTCCTGGC
CGTCCTCGCCTTCCAGCAGGTGGTCGCTGGGCGATCGGTGGACTACTGTT
GGGTTTACATGTTGAGTCGTCTTGGAATTCTAAGGCTTTTTGGTCCATGG
GCCCCTTTCTGTTTTTATCATGTTATCATGCATTGAAATACTTTAGCAAG
CTTAGTAGCAAGTAAGCTCAGAGGGCCGCCGCAAAGCAGAGCCTGGACAA
ATACTAAAAGAGGGATAAACCCAAAGTGGTGAAAGATTCGAAAGATTAAC
GAAATCATGATGGCGCCAAATGCTGCGCCTCCGTCTCTGAGATAATATCT
GTACTTGAACTACTACTGCTGCTGCTGTTTTTGTTGGTGCTGAGTAGAGC
AAATCATTCTTCTGTCTGGTATAATGTTTCTCTTACAATATATTTGTCAT
CAATTCTTGCAAATGATATAACTCCTTTTGTCACCTCCAAGAGCTCATTG
GTTTCCATTCCAGAAATACATTCTTATTGGTTGTAAACGACAGCGTACTT
CAATTGTAGTCAATCAGATAGTTTTCTGCCAATATATACTGATAACCAAA
GATCCAAAAACGGAAATAAGCGTTGGAGATACAGCATACCCATATCGAAA
AGCGAGACCTCATCATATTCATATATCGTAGCACGAAGCTACACGGAAGC
CGAAGCTCGAAGTTCAAAGACACCGCGATGCACAGACATCGGTCCCATTT
AAAGAGAGGTCTCTGAATGCTCCTTCTAGTTCGAACATGGAGTAAGCAGT
TGAGTTCTGAGTAGTCAATGAAGTTGTTGGCAGTTAATAAGTAATCACAG
TACAAAGAAGTGTGGTTGTTGCTGGTGGCTGCCAGCTAGTAGGGCATGGT
GTTTCTCGAGATACTAAGTTTAGCAATGCGCATTGCATCCAACTCCACAG
AAGAATCACACGTCATTCGGAGATCTGGCTCCTCGCAACTAGGCATTGGT
AGAAGAAGGCATGGGCTATTGAAATAGAGTTGCTGACCATTGCCTAAAGA
GCCATGTGTAGACAATGAAAGTTGTCTATACATCACCTGTAGTGAGTGAG
TCTTGATAGGAACCACAAGATACTAGAAGCCACCATGTTGCCATGAGTTG
CTATCTTAGTATCTCGGGAAATGGTGTGCCCCTCATTCGATGAGAAACCC
ATTTACGCTTCCGTCTGCACAGTGTAGTATAAATGAAAAGTCACAGGTAG
AATCCATAGATAGCTGAAGAGGAGAGCCTCATCGTATGTCATTGAATATC
AAACTTGAGAGCAAGTTGCCTGCCTTTAGCAAATCCACGTTTTCAATTAC
TTTGCCAGAAGAGTATATCGCTGTCGTTGTCGTCGTTGTGATGAGCTCCT
CCTCCTAGCCGCTGTCGTCGCAGACCTTTAGTTAAGTAATTTTTCAAACC
AGCCAGACAAAACAGCCAGCTCAAAATCAAAACAGCCAGCTCAAAATCAA
AACAGCCGGGAAACAGCCAGCTCAAAATCAAAACAGCCGGCAGTTAGCTT
TTGTTTCCCCCACTTTTCCTCCCTGGATCTCTTTTCCTTTTCATTTTTAT
TACAAGGCTTCGATGGGTGAACAAAGGTTATTAGTAGTAGTAGCATCAAT
ATATATATATATATATATATATTTTATATATAGAAGAAGAAACTGAAAAA
AGGCCATCAAGTTGGTCATTCGATACAAAACACTAAAGGGTGAAACATTT
GAAAGGACCTTCTGCCTTTCAGGCATGCAACAGGGACACAATCAAAACAA
AACCCTGGAATCAAAATACCGAGCACGTGGAAACACAGCCATCAGTCACT
CTGGCTGCTGGTCGCCGGGATGGAACAGAAGATATATATATATATATATT
ATGAGGTGATTGGGGGTCTACATGACTTGACTTTGGTTCTAGAGGAAGAA
GCAAGAAAAGATGGGACTGTTGGGAAGATCCTTCATGAGGTGATTGATGA
AGCTGTGAGAGGGAGAGAGGTCCATATGGTTACATGATTCCATCTTTAGG
TCTTGGAGGATAGTATGCAGCATTGAGGAAGAAGTGGGTGTAGGTAGTTA
CATTATTATTGTAGTATGCAGATTAGCTAGTTTGTCATAGTAGGTATGTG
TGAAGATGCAAGGCGAGATTGTTTTGGTTGAAATTTAACTGACTATATAT
ATATATATATATATATATATATATATATATATACCCAATTCCGTGCGCAT
GCGGATTCAGATCTAACCACAGAACAGTTGAGCTTAGCTTCCTCATCAGG
CCCTGGACCTTTGTCTGAGGCTCGTGACCAGCACCTGTGCGGTTATGATG
ATGATGCTCAGATTTGTTGTGAACATGGAGGAGAAGGAGGGCAGAATGTT
TCCTTAACAGCTGAGGTACATGAGACAACAGTGACAAGTGGTGGTGACGG
CCCGTTGCTGTTTTCGTTTTTCATTGTTGTTGTGCACTTCTTTCTTTTCT
CATATCACTCCCTATCTTCAATTGGTTCTCATTTTAGTCAGAGGCAGCCT
GATGAAGGCTGGCGGAGGATGGAGAGAGCCGCCAGCCGTGGCTTTTTAGT
AGCGAAATGCAGCATAGTTGTCATGGACTTAATGATTAAAACCTTTGACA
TATTGCCTTCTTGGCAGTATGGAGCTATACTCACTGATGATAGCGGTTCC
TGTTTAAACCCAACACCCAATATATATATATATATATATATATATATATA
AATATGATGTGTATTGGGGGGTGGCATTGTATAATGAATAACGTAGACAA
AAAAAAAAAAAAAATGACGATGATGTAATACATATAGATACGAAATTACC
ATCATCTTTTGTTTGTGATTCCCTCCCCCCAACAACAACAACACACAACA
ACAACAAAAAACACTCACCCACACTCTCCACCCCTGACCAGGGCAAGCTC
ATTTGCCAACTACTTGTACTACGCCACGACCGCTGCCACCCACCCTCCAC
ACCTTGTCATGCAGCAAGTTCAGCAACAGTGTGCGCCTCATTGACTGCCG
TTAACAATCTGAGTCATTGTTCCAGATATCCTGATTCTCTGTTGAATGGT
TTTCTGAACTTTCTTCTGCTCTTCCCCTTCACTGTCCCAGACACTTTGTC
CTTCTACTCACCAACCACTTCCAACATACAATAGAATGTAGGTAGTATCG
ATGGTGGTGGTAATTGGGGTTGCATGGCGCGCGAGATGATTAAAAGAAGA
CGATATGATTGAGACGAAGAACCAAAACAACAGAAGCAGCACCGCTGCTG
GTAGGTATTGGTGAGCTGCTGGTGCTTCTGATGATGATGTTTTTTCTTCG
TCGTCGTTGGTCGTCGTCTGCTGGACATGTCTAAATTCTCGTTTCGAATT
TTAGACTTTTAGAGGAAATTTCATCAATATGAGTGTCTATATACACCTCT
TCATCTTTTTTATTCTGATCAAGAAGTACAGAAATGTTCTATGTACGCGA
GATTTATTCGGGATTCCACATAACTTTGGGGGGATTTACAGCGAAATTTT
GGTCTTGTCAGAAGTGCCAAGATCTCGGCTAAAATGGGGTTCCACGAAAA
CTTCTAAAATTTGTGCTTCAGATATTTCTAATAGCAGCCTGTGCATCTTC
ATTGTCATCATTGTATCATTGCCGTCAACTTGTAGATATTTGATTGGTTC
ATTCAATTCTAATATCTTTTATGGGTTCCTAGTAATTTTTAATTGGCTAA
AGATTTCTTACGTACCCAAGTTTTTATTTCAGTACACAAAACCGCCCAAG
ACAAAATACAACTGCCGGCCAAAACCGCCGCCCAGCCAAATTCACGACCG
CCAGACTGCAACCAAAACTGCCGCCCGAAAACATCTCCGCCCAGTCTTAA
CTAAAGGTCTGCCGTCGTTAGTGTGCACCAGCAGCAGTAGTAATGATGAG
GAACAGAAGAAAGAGGATTCTTGTCACAAACAGAGAAACTGAACAATATT
TTTTTCATCCTCTTGAGAACAGACACACAGGAAGAGGGAGGTAGCAAAAA
CAAAAAAGGGTCCATGAGTAAACCATCCCTGTCAGTTTCCACATTGTTCC
GCATAGCGCTCACTGTAACACACTGTTCCACATAGCGCACACAAGTGGCC
CACCGTTAGATCGCGTTGTTACCAGTAAAGACTAAAATCCGAAAGACAAT
ATATAAAGTCAATATAAAGTCGTGTTATCAAAGCAGCCTGCTTTTGGCAT
TGGGTTACCCTCAAGGGCCCCTCTGTTCAAAAGCAAAAACTTTGCCAAGC
TCTGAAGACCGAAGAATTTGCACTGTATGGGCAGCACAGTACCAATCACA
CGGAGCAAATGCAGTGGGGACATACCCATTGGAATACTTTAGCAAGCTTA
GTAGCAATAAAGCCCAGAGGGCCGCCGCAAAGCAGAGCCTGGAAAAGTAC
TAAAAGATGAATAAATCCAAAGGGGTGAAAGATTTGAAGAAAGATTAAAG
GAAAATATGATGGCGTCGAAGGCTGCGCCTCCGTCTCTAAGATAATAGCT
ATACTTCAACAACTGCTGCTGCTGCTGCTGCTGTTGTTGCTGGTGCTAGG
CAGAGCAGACTATTCTTCTGGTGATGTTTCTCTAAATATATTTGTCATCA
ATTCTTGCAAATGATACAACTCCTTTTGTCATCCCCAAGAGCTCATGGGT
TTCAATTCCAGAAATACATTCTAGTTGGTTGTAAACAACGGAGTAATTCA
ATTGCAGCTAATCAGATACTGAGTAGTTTTCCGCCAATATATTTTGTTGG
GCAAACACGATTGTAGGTACGACGGACTTCGTGACAAGGTGTTGGCACAG
TAGCGCTCCACGCATATATTTAGTAGGAAGTAGAATAATAGCAGTAGTAG
GAGACTTGCATAGGGCTAGGAATTCCACGGAATCGGATCTGCTTTAATTG
CCACTAATAGCGAAGGCTTCTTTGCTTCATAATAAGGGTAAAGCCGACCC
CGGCACTGGGGCCTGTGTCTATCTCAACACTATTAGTGGCAATTCACTCA
GCGATAGGAAAAGCTGTTTTATTCAGGGGTCGGGATGATATGGAACTCTT
GTGGAAAGTTTCTGTGCCTGGCTGTGGTGGCCTGGGTAGTGACGCGCCTG
AGGGGGGCGGTTCCCCCGGTGCTTGTTCTTCGATGACTCCAGATTCTTCT
TCGTCGAGATACAGTTGGATGTGCGCGTGATTGGTTCGCCGAACGATGCT
TCGAATTCGAGAATACGAACAATTGAACGATTAGCGGGGGAATGTCGACG
TGAGACAAGAAGGAACACGGATCAGGCGGCCCTAGACCCGGAAAAGCGCC
ACGCCTGACGGAATTATCCCGCAAGTATCGACCGGTGCGATCTCGGCACA
GCCGCGAAAGTAACACTGGTCAAAGATATGGGGACTGACCGGCACCATGA
AGAGCATGAAGCATGGTGTGTACTACGTAGACCAAAAAAAAAAAAAATTC
GGGTGGTAAGGATTCCTCGCCGATTGTGGCTCGTCCAATGAAAGGGGGAG
ATATGCATTCTCTCGAAAAGGTTATTCTTCATTGGAAAGCTGAAACTGAA
TGTCTCGAGAAGGAGGTCGCGAATCTGGAGCTTATCATGGGTTTGAAAAA
GGGTCATGCCAAGCTCAGAGTAAGAGTGCTCAAATTGCGGAAGATCGCAG
GAATGGCCGAGGATGGCTCTGACGAAATGCAATGCTTCAGCTGTGGCAAG
CTCGGTCACTTTCAGCGTGACTGCGTGCAACACGAGAAGATAATGCGTTG
TTGGACGTGTAACGAACCTGGTCACTACTCAAGGGAGTGTGATTCTGCTT
CCAAGGAGAAGGCAGATGATTCCAGCCAGGGCACCATGAGTCTTAATGGT
GATGCTCATCACCAAGGTGATGATGACGATTCAACACTGGTGGGTGATGT
CCTGCCAGTGGAACCAACCGGCCCGGAGCAGCTAGGCGCCCAGCCGGAGG
CGGGGGAGAACCCTGCCAACACAGGAGCCGACGCGGAGCAGCCAGGAGGC
GCCCGGCCGGCGCTGAGGGGCAACCCCACCAAATAAGGAGCCGACGCGGA
GCAGCCAGGAGGTGCCCGGCCGGCGCTGGGGGGTAACCCCACCAAGCGGC
GCGGGCGCGGCCCGCTACCGACCAGGCCCGCCGCGGAGCCGGCGGCGCCG
ACAACCAGGCCTACCGCGGAGCTGACTCGGAGAAGCCAGCTGCCAGCGTG
GAGGCAGAAGAAGATGGGTGCTGGGGCCGGAGCCCCCGCAGCCAGACGTA
CACCCCCAGCGGCTCGGCACGGTGCCGGGGGAGGGGGGGGGATCAGTATC
CGCCCGTACACCTGCAGGTCAGGGGGAGACCGCTGTGTCCGCCCATTTTG
ACCACAGACTATCACTGCTCGACATGCCCCGACGTGTGGAGGGGCCAATT
GGTCTCAGACCCGTGGTACACCATGAGGGCACAATCGTTGGTTTTTGGGT
TCAGAATCAAACTGCCGAAGCTGATAGAGTGATCAAACAACTGGGGGCTA
GCGTACACTGGAGCCTGCTAGATTTAAGCTGATTCGATCCCTTTAGGCCT
GGGTATACTCAAGGAAGGCACCCTGGGGAATGCCCTTTGGTGCTGAAGTA
ACTGGGTCATGTTTTGCCCTTTGATGGTTCACACTTTCGCCTCTGTGAGA
CTCCAGGTGAACTGGGGGAGTGTTGGGCAAACACAATTGTATAGGTACGA
CGGACTTCGTGACAAGGTGTTGGCACAGTAGCGCTCCACGCATATATTTA
GTAGGAAGCAGAATAATAGCAGTAGTAGGAGACTAGTATAGGGCTAGAAA
TTCCACAGAATCGGATCTGCTTTAATTGCCACTAATAGCGAAGGCTTCAT
TGCTTCATAATAAGGGTAAAGCCGACCCCGGCACTGGGGCCTGTGTCTAT
CTTCGTTAGTGTTTCAACATATTTAATACTGATAACCAAAGATACAAAAA
TGGAAATAAGCGTCGGAGATACATCATATACCCATATCGAAAAACGAGAT
CTCATATCGTAGCACGAGTATGCACGGAAACTGCACGGAAAGATCGAATT
TCACCAATGAGACTGCGATGCCCAGACATTGGGCCCCTAAAGAATGGTCT
CTGAATGCCATGAATAAGCTTCCCTGTTGCTTCACGAAGTAGAAGCTAGT
GTTCCCAAGGCAAAGTTGATTGCGCACTGCGTGTGTATGTCGTGCCAAAA
CGCCAGGGTTTGCAGTGGTCAAGACAGACTGTTTGCCCTTGTCTCTTTTG
TTGACATCTCTAAACAGAAAAAGTCGCCGTGACAACCAACCGTGAAGTTT
TGACATGATGTTTTGCTGCACTGGGGTTTTCCAACAACCACAAGCTTTAC
TTAGCAAAGTACGACTGCGCCACTCTTGTTTGGTATATATATCAAGTACT
TCAACAAGCTCACCCTTTGTCACCGCTGCCGCCCTTACCAACACGCTCAT
CCCTCAAACAGATGCTCATTCCTCGTTGTTGCCGCCGCCCCTGCCGCCGC
CGCCCCTGCCGCGGCCGCCGCCGCCGCCCCCGCCGCCAGGTGTTTGCGCT
GACGGGCCAACGCGACCTGCTCTACG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig102:20081..30656+

>mRNA_H-akashiwo_Contig102.3.1 ID=mRNA_H-akashiwo_Contig102.3.1|Name=mRNA_H-akashiwo_Contig102.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=537bp|location=Sequence derived from alignment at H-akashiwo_Contig102:20081..30656+ (Heterosigma akashiwo CCMP452)
ATTCAGGTGCTGGTGTTGACATCGGGCTTGGCGCTGCTGGTGGTTGTCCA
CCTTACGGATGTTTACTACGGTGCCTTTTTGGAATTTTGGGCTGTACAGC
TCCCACGGGCGGCAGTGCTCTGGGGTGTGTTCGCGGCCGGAGGCCTGGTG
TGCCGCCGGTACTGCCCCGTGGACGCTCGCGGGTACATCCTCACCCAGCG
CCACTCGTGGTTCAAGGTGAACTACACGCACAAGGCCTGCGTGCTGGCGG
CGTACCTGGTGCCGCTGGCGCTGCCCCCGCCGCCGCGGCGGGGCGTGGGG
CCCGGCCTGGCCCTGCTGCTGGACCTGTGGACCGTGCTCTTCGCCCTTGC
GGCCCTGGTGCAGCCCCTGCGCGAGCGGTGGGCGCCGCTGATGCTCATGT
TCAACGCGCTGGACCGGCCCGAGGACCGCCCGCACAGCCTGGAGTGGGCC
GTGGCCCTCAACCTGCTGCCCGGCTTCCTGGCCGTCCTCGCCTTCCAGCA
GGTGTTTGCGCTGACGGGCCAACGCGACCTGCTCTAC
back to top