mRNA_H-akashiwo_Contig102.24.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig102.24.1
Unique NamemRNA_H-akashiwo_Contig102.24.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig102.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig102contigH-akashiwo_Contig102:1705573..1706439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387053.1029143-CDS-H-akashiwo_Contig102:1705572..17056261681387053.1029143-CDS-H-akashiwo_Contig102:1705572..1705626Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 1705573..1705626 -
1681387053.112806-CDS-H-akashiwo_Contig102:1706107..17061721681387053.112806-CDS-H-akashiwo_Contig102:1706107..1706172Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 1706108..1706172 -
1681387053.1230326-CDS-H-akashiwo_Contig102:1706396..17064391681387053.1230326-CDS-H-akashiwo_Contig102:1706396..1706439Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 1706397..1706439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig102.24.1prot_H-akashiwo_Contig102.24.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig102 1705573..1706439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig102.24.1

>prot_H-akashiwo_Contig102.24.1 ID=prot_H-akashiwo_Contig102.24.1|Name=mRNA_H-akashiwo_Contig102.24.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
QKSLPHLGTFQKSYTPGISRQPWTLKSAGEEDNQSEDDHERRAPEPKGEG
TAED
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mRNA from alignment at H-akashiwo_Contig102:1705573..1706439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig102.24.1 ID=mRNA_H-akashiwo_Contig102.24.1|Name=mRNA_H-akashiwo_Contig102.24.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=867bp|location=Sequence derived from alignment at H-akashiwo_Contig102:1705573..1706439- (Heterosigma akashiwo CCMP452)
CAGAAATCTTTGCCCCATCTCGGCACCTTCCAAAAAAGTTACAGTAAGCA
CTTTCCATGTTTTGTTAACAGCCGAAAAGATGTGCTTTGCTATCCCTGCA
TTCCATTTGTCAAAACTTTCATGCCTAACACTAGTTTAAGTGAATCTTGA
GGTTGACATTCGCAAGTAAACGATGTGCATGCACGCAGAAGAACCATGAA
CGAATTCTGTACCTCATCAATGAGGTTTTCCCTCGCTGCTCTGCTAAATG
ATTTTTCTGGATAAAAGCTCCTGGTATATCCAGGCAGCCCTGGACATTAA
AATCAGCTGGGGAAGAGGACAACCAGAGTGAGGTAAACTAAACAGCATAA
TGGTCAACCTAAGTTTCGTCTTGACTTGTGAAACATTTATGATCAATATA
TACTTAAAAAAAATGATAATAAAATAAGTTATGAAGAATCAGTGGAGAGT
ATTATTCACTTCACCAGAATGGCACTTACAATAATAGGTTGTAACCTTGG
TTAAATGTAATGTATCCATCTCAGCATATCTTTGAGCTATGCATGATGTA
GCAAGTAGATTGAACAAATCCTTCACACCAGGGGAAAAAAAGAACGCAAA
GGTGCAAATTCCATCCCATGAAACATATTAGGTCGGCCCATCCCATGCGC
GCTGCCACCGTTGCTGCTGCCAACCCCGACACCTGCCCAACCCGAAGTAC
TCTGCTAGTCTTTGACAGCATGTGGTGCTGCGCTGGCGATGGACAGGAAG
CACTGTCACAGGGTTGACACACAGACTTCCCGGTGCCCCCCCTGCACTGC
CACCGCCCGCCAGGATGATCACGAGCGCCGTGCTCCCGAGCCCAAAGGAG
AAGGTACTGCCGAGGAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig102:1705573..1706439-

>mRNA_H-akashiwo_Contig102.24.1 ID=mRNA_H-akashiwo_Contig102.24.1|Name=mRNA_H-akashiwo_Contig102.24.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig102:1705573..1706439- (Heterosigma akashiwo CCMP452)
CAGAAATCTTTGCCCCATCTCGGCACCTTCCAAAAAAGTTACACTCCTGG
TATATCCAGGCAGCCCTGGACATTAAAATCAGCTGGGGAAGAGGACAACC
AGAGTGAGGATGATCACGAGCGCCGTGCTCCCGAGCCCAAAGGAGAAGGT
ACTGCCGAGGAT
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