mRNA_H-akashiwo_Contig102.21.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig102.21.1
Unique NamemRNA_H-akashiwo_Contig102.21.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig102.21.1 vs. uniprot
Match: A0A7S3UVZ3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVZ3_HETAK)

HSP 1 Score: 125 bits (313), Expect = 1.810e-35
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 DGSGGESQSATPQPSEPATDRDTSGLESAKAALFPGGFMTGSAQLQQLAQACGGAGFDWREGPS 192
            DGSGGESQSATPQPSEPATDRDTSGLESAKAALFPGGFMTGSAQLQQLAQACGGAGFDWREGPS
Sbjct:   36 DGSGGESQSATPQPSEPATDRDTSGLESAKAALFPGGFMTGSAQLQQLAQACGGAGFDWREGPS 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig102.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UVZ3_HETAK1.810e-35100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig102contigH-akashiwo_Contig102:1654422..1655343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size195
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387052.9465752-CDS-H-akashiwo_Contig102:1654421..16545491681387052.9465752-CDS-H-akashiwo_Contig102:1654421..1654549Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 1654422..1654549 +
1681387052.9567585-CDS-H-akashiwo_Contig102:1655277..16553411681387052.9567585-CDS-H-akashiwo_Contig102:1655277..1655341Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig102 1655278..1655341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig102.21.1prot_H-akashiwo_Contig102.21.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig102 1654422..1655341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig102.21.1

>prot_H-akashiwo_Contig102.21.1 ID=prot_H-akashiwo_Contig102.21.1|Name=mRNA_H-akashiwo_Contig102.21.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
DGSGGESQSATPQPSEPATDRDTSGLESAKAALFPGGFMTGSAQLQQLAQ
ACGGAGFDWREGPS
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mRNA from alignment at H-akashiwo_Contig102:1654422..1655343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig102.21.1 ID=mRNA_H-akashiwo_Contig102.21.1|Name=mRNA_H-akashiwo_Contig102.21.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=922bp|location=Sequence derived from alignment at H-akashiwo_Contig102:1654422..1655343+ (Heterosigma akashiwo CCMP452)
GATGGCAGCGGAGGAGAAAGTCAGTCGGCAACTCCTCAACCCAGCGAACC
AGCAACTGACCGTGATACTTCTGGTTTGGAGAGCGCAAAGGCGGCTTTAT
TCCCAGGCGGTTTCATGACTGGCAGCGCGTGAGTTTTGCTGTGATGTGTA
TGCCTTCTTGTACACATCAGGCAATTCAGCCAAGGGGTGGTACTGAAAAT
ATTGGTGCTACTGTAGTATATGTAGCGTTTGTATCTTAATGGTTCCTGTT
ATAAAGTGTATGAGTTGTTGCTTGAACCTTCTCATTACCTTTTGATATGA
TGGTACTGCCACAAACTGGAACACTACTGTTTAGATATATAAGTATATAT
ATAATATGTATAATATATATAACCCTAAACTAAATTAAAATCATCATCAT
CATCATGTATATATATATATATATATATTATATACTACAAGCCACGGCTG
GCGGCTCTCTCCTTCCCCCGCCAGCCTTCATCAGGCTGCCTCTGACTAAA
TGAATACCAGTTGAGGATGGGGAATGAAAAGGAAGAGAGAAAAATGCACA
TAATTTATTAATACATATACTACTAATATATAATGTTGAAGTGAAAGTGA
TCACTGATGTGCAGAGAAATTATATAATAAACACACCCTAATATAATATT
TATTTAGAGAGAGAAGGGTTAGGGTTAGAGTTACCTGGAACAAGTGCCAG
ACCTGCTCCACGTCAAGACATGAATGTCAAAGTAGAATGAAAAAATGATT
GTGAAACCCCTGTCTTGTTAGAGACTGCCAAAAGAAAACAGATAGAAGAT
CGATACTTTGTACCTCTAAAAGCGGATTTTTCTCTTTTTGTTGTCTATCC
AAACAGGCAACTACAGCAGCTTGCACAAGCTTGCGGTGGAGCTGGCTTTG
ACTGGCGGGAAGGCCCGTCCAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig102:1654422..1655343+

>mRNA_H-akashiwo_Contig102.21.1 ID=mRNA_H-akashiwo_Contig102.21.1|Name=mRNA_H-akashiwo_Contig102.21.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig102:1654422..1655343+ (Heterosigma akashiwo CCMP452)
GATGGCAGCGGAGGAGAAAGTCAGTCGGCAACTCCTCAACCCAGCGAACC
AGCAACTGACCGTGATACTTCTGGTTTGGAGAGCGCAAAGGCGGCTTTAT
TCCCAGGCGGTTTCATGACTGGCAGCGCGCAACTACAGCAGCTTGCACAA
GCTTGCGGTGGAGCTGGCTTTGACTGGCGGGAAGGCCCGTCC
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