mRNA_H-akashiwo_Contig1018.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1018.2.1
Unique NamemRNA_H-akashiwo_Contig1018.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Match: A0A7R9WSF8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSF8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.560e-15
Identity = 48/103 (46.60%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   49 IAIIPNESLKFNLDVKPKTAVVQLKLQHPGPLDAAVMAYKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRDHIVLRDDPAQREAGEAG-----DKFLVQT 342
            + I P+  L FNL     T+   L L+HPG  D  + AYKIKTT P+RYLVRPNQGMI PG S  V I+L+++D  +L    +  + G+ G     DKFLVQ+
Sbjct:    7 LEITPDTYLDFNLAPNELTSRTTLTLRHPGHTDDHI-AYKIKTTQPRRYLVRPNQGMIAPGGSDTVSILLIEKDKQILLQ--SYEKLGQTGLDHSKDKFLVQS 106          
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Match: A0A7S2XZQ3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZQ3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 9.210e-15
Identity = 52/116 (44.83%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   28 AAPQSADIAIIPNESLKFNLDVKPKTAVVQLKLQHPGPLDAAV-----MAYKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRDHIVLRDDPAQREAG-------EAGDKFLVQ 339
            A   S ++ + P+++L+F L  +   +  QL L+H GP  A       MA+KIKTT PKRYLVRPNQG+I PG+S  ++I LVD+D I L +  A + AG       E+ DKFLVQ
Sbjct:   36 AVASSYELVMAPSDTLQFPLAAE--RSQTQLILKHSGPPVAVAEGSEPMAFKIKTTQPKRYLVRPNQGLILPGQSQTIEISLVDKDRIYLLN--AAQAAGSTEGINRESTDKFLVQ 147          
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Match: A0A7S3LDL8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDL8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.300e-13
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   49 IAIIPNESLKFNLDVKPKTAVVQLKLQHPGPLDAAVMAYKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRDHIVLRDD---PAQREAGEAGDKFLVQTT 345
            + I P   +KF L     T    + L+HPG   A  +A+K+KTT P+RYLVRPNQG+I  GK+ +V I+LV++D   L        Q       DKFLVQ+T
Sbjct:    6 VEISPESEIKFELSSGEATPKAVITLKHPGG-SAGSVAFKVKTTQPRRYLVRPNQGIITAGKTEEVQILLVEKDKNSLYQSFLRLGQAALDNCKDKFLVQST 106          
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Match: A0A7S2KGL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KGL7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.930e-12
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   49 IAIIPNESLKFNLDVKPKT------AVVQLKLQHPGPLDAAVMAYKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRDHIVLR---DDPAQREAGEAGDKFLVQTTPAVSD 360
            + I P  SL+F +   P T      +   + L+HPG      +A+K+KTT P+RYLVRPNQG++ P  S  V I+LVD+D  VL    +   Q     + DKFLVQ+  AVSD
Sbjct:    8 LEIDPESSLQFTITRDPATDGSDGSSRCTMTLRHPGHTKG-YLAFKVKTTQPRRYLVRPNQGIVAPNSSETVSILLVDKDRQVLYSTYERLGQSALDHSKDKFLVQSC-AVSD 118          
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Match: A0A7S0UGK8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGK8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.620e-12
Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = 1
Query:   49 IAIIPNESLKFNLDVKPKTAVVQLKLQHPGPLDAAVMAYKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRDHIVLR---DDPAQREAGEAGDKFLVQTTPAVS 357
            + I P   L F+L     T    + L+H G    ++ A+K+KTT P+RYLVRPNQG+I PG S  + I+LV++D  VL    D   Q     + DKFLVQ+  A S
Sbjct:    6 LIIDPESELVFSLSPNEATPRCMMTLKHGGGSTESI-AFKVKTTQPRRYLVRPNQGLIAPGTSETISILLVEKDKQVLLQNYDRLGQSGLDHSKDKFLVQSCAADS 110          
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Match: A0A7S4QY17_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY17_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.530e-11
Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 1
Query:   19 PADAAPQSADIAIIPNESLKFNLDVKPKTAVVQ-----------LKLQHPGPLDAAVMAYKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRDHIVLR---DDPAQREAGEAGDKFLVQTTPAVSDGNPVMDPE 384
            P+D +  S  + + P  +L+F L   P +A              + L+HPG      +A+K+KTT P+RYLVRPNQG++ P  +  V I+LV++D  +L    D   Q     + DKFLVQ+  A  +   + D E
Sbjct:    2 PSDESAPSYALEVTPESALQFTLTRTPASAAENSSTDAGVTRCTMTLRHPGKTGQH-LAFKVKTTQPRRYLVRPNQGIVAPNSTETVSILLVEKDKQILLQSYDRLGQSALDHSKDKFLVQSCAAPDEFASLYDKE 136          
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Match: A0A1Z5K8X9_FISSO (Vesicle-associated membrane protein-associated protein A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8X9_FISSO)

HSP 1 Score: 69.3 bits (168), Expect = 2.070e-11
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   61 PNESLKFNLDVKPKTAVVQLKLQHPGPLDAAVMAYKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRDHIVLRDDP---AQREAGEAGDKFLVQT 342
            P+ +L+F L  + ++    L+L+HP    A + A+K+KTT P+RYLVRPNQG+I PG +  V I+LV+++   L        Q    ++ DKFLVQ+
Sbjct:   17 PDSTLQFTLSNQEQSPSCSLELRHPDASSAPI-AFKVKTTQPRRYLVRPNQGLIEPGGAQTVQILLVEKEKNSLLQSYERLGQPTLDQSKDKFLVQS 112          
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Match: G4YN91_PHYSP (MSP domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=G4YN91_PHYSP)

HSP 1 Score: 68.6 bits (166), Expect = 2.710e-11
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   31 APQSADIAIIPN--------ESLKFNLDVKPKTAVVQLKLQHPGPLDAAVMAYKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRD-HIVLRDDPAQREAGEAGDKFLVQT 342
            A    D+A+ PN        +SL F+L  +P+TA  Q  L      D   +A+K+KTT P RYLVRPNQG++ P  S  + +IL  +D   +LR DPA+R+   A DKFLVQ+
Sbjct:    2 ASSGVDVALAPNSSVILEPADSLSFHL--QPQTAP-QAVLTIRNVADDRQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQL--ANDKFLVQS 109          
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Match: A0A3F2S0D5_9STRA (MSP domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S0D5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.060e-11
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   31 APQSADIAIIPNESLKFNLDVKPKTAVVQLKLQHPGPLDAAVMAYKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRD-HIVLRDDPAQREAGEAGDKFLVQT 342
            AP S+ + + P +SL F+L  +P+TA  Q  L      D   +A+K+KTT P RYLVRPNQG++ P  S  + +IL  +D   +LR DPA+R+   A DKFLVQ+
Sbjct:   11 APNSS-VILEPADSLSFHL--QPQTAP-QAVLTIRNVADDRQIAFKVKTTRPLRYLVRPNQGLLGPNGSASIMVILQQKDCDELLRLDPAERQL--ANDKFLVQS 109          
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Match: H3GM18_PHYRM (MSP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM18_PHYRM)

HSP 1 Score: 68.9 bits (167), Expect = 3.290e-11
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   31 APQSADIAIIPN--------ESLKFNLDVKPKTAVVQLKLQHPGPLDAAVMAYKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRD-HIVLRDDPAQREAGEAGDKFLVQT 342
            A    D+A+ PN        +SL F+L  +P+TA  Q  L      D   +A+K+KTT P RYLVRPNQG++ P  S  V +IL  +D   +LR DPA+R+   A DKFLVQ+
Sbjct:    2 ASSGVDVALAPNSSVILEPADSLSFHL--QPQTAP-QAVLTIRNVADDRQIAFKVKTTRPLRYLVRPNQGLLGPNGSASVMVILQQKDCDELLRLDPAERQL--ANDKFLVQS 109          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1018.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9WSF8_9STRA2.560e-1546.60Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2XZQ3_9STRA9.210e-1544.83Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A7S3LDL8_9STRA4.300e-1342.16Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2KGL7_9STRA1.930e-1241.59Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S0UGK8_9STRA4.620e-1241.51Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S4QY17_9STRA1.530e-1133.82Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1Z5K8X9_FISSO2.070e-1140.21Vesicle-associated membrane protein-associated pro... [more]
G4YN91_PHYSP2.710e-1142.48MSP domain-containing protein n=2 Tax=Phytophthora... [more]
A0A3F2S0D5_9STRA3.060e-1144.76MSP domain-containing protein n=3 Tax=Phytophthora... [more]
H3GM18_PHYRM3.290e-1143.36MSP domain-containing protein n=1 Tax=Phytophthora... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1018contigH-akashiwo_Contig1018:57947..58991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr48918
PFAMsMotile_Sperm
Model size390
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.37e-15
EggNOG OGsCOG5066@1|root,KOG0439@2759|Eukaryota,2XBZX@2836|Bacillariophyta
DescriptionMSP (Major sperm protein) domain
Cds size378
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387052.3258872-CDS-H-akashiwo_Contig1018:57946..579881681387052.3258872-CDS-H-akashiwo_Contig1018:57946..57988Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1018 57947..57988 -
1681387052.334976-CDS-H-akashiwo_Contig1018:58388..584611681387052.334976-CDS-H-akashiwo_Contig1018:58388..58461Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1018 58389..58461 -
1681387052.3437579-CDS-H-akashiwo_Contig1018:58615..587681681387052.3437579-CDS-H-akashiwo_Contig1018:58615..58768Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1018 58616..58768 -
1681387052.352603-CDS-H-akashiwo_Contig1018:58869..589791681387052.352603-CDS-H-akashiwo_Contig1018:58869..58979Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1018 58870..58979 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387052.3620095-UTR-H-akashiwo_Contig1018:58979..589911681387052.3620095-UTR-H-akashiwo_Contig1018:58979..58991Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1018 58980..58991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1018.2.1prot_H-akashiwo_Contig1018.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1018 57947..58979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1018.2.1

>prot_H-akashiwo_Contig1018.2.1 ID=prot_H-akashiwo_Contig1018.2.1|Name=mRNA_H-akashiwo_Contig1018.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=126bp
MDPADAAPQSADIAIIPNESLKFNLDVKPKTAVVQLKLQHPGPLDAAVMA
YKIKTTAPKRYLVRPNQGMIPPGKSVQVDIILVDRDHIVLRDDPAQREAG
EAGDKFLVQTTPAVSDGNPVMDPESL
back to top

mRNA from alignment at H-akashiwo_Contig1018:57947..58991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1018.2.1 ID=mRNA_H-akashiwo_Contig1018.2.1|Name=mRNA_H-akashiwo_Contig1018.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1045bp|location=Sequence derived from alignment at H-akashiwo_Contig1018:57947..58991- (Heterosigma akashiwo CCMP452)
CCAAATTCCAAAATGGACCCCGCTGATGCAGCTCCTCAATCTGCAGATAT TGCCATCATCCCCAATGAAAGCCTCAAATTCAATTTGGACGTCAAACCTA AAACCGCTGTCGTCCAGCTCAAGTAAGTTTTATATATACTTATATATTTA AAAAATGGGGTTTCTGCTCATCCCCTGAACTGAAAATTCAAGGCCCACAA ATCATATTCTGCTAATCTTACAGGCTTCAGCACCCTGGTCCATTAGATGC TGCTGTTATGGCGTACAAAATCAAAACAACTGCCCCAAAGAGATATCTTG TCAGGCCAAACCAAGGCATGATTCCACCCGGAAAATCCGTCCAAGTAGAT ATCATTCTGGTTGATAGAGACCATATGTGAGTTTAACCGCTCAATACTTC AAAAAGTGCTTTGTTTCCTGAAAAGGCCTTCCTTGCCATCTTTGTGGCCT TCAGACCTTGAAGACTCTGATGACCGAGTGTGCCCCCCGATTTTTTGGAT ATACTTACTATACAAACCTGTACTTCGCAGAGTATTACGTGACGACCCTG CGCAACGCGAGGCAGGCGAAGCCGGGGACAAGTTCCTGGTTCAGACTACT CCGGTTGGTAGCTTTCTGGCCCAGTAGTGTGACCGATGCTCCATTTGTGT ATGTTCCGTTTCCTCTCTCGGTTGGTTGTCAAGTGAATGAGTTCCTTTTA CAGCTTTTGTTGTCTGCCCTGTTTTATAAGGTACAATGTATATCACAGAG GATTCCAAAACTGGGATGAGCAAACAGAAGTCAAAAGTGTCGAATTGACT TCACGGGCATTTGGACAGCTTAATGTATAAGTAGACAAAAACAAACAAAC AAAAGCAAAAGCACTACTGGCAGTTTGAGAAATAACAAAGATCTTTGCAC CCAGCACTGTCCTTGTCTGTTCTGGTGAAATTCAGTTCATTTGTATGGAT ATAATTGTTGATGGGACGAAATGCTTCCTCCACTTGTTGTGGATCATCTG CAGGCTGTGAGTGATGGGAACCCTGTAATGGATCCAGAGTCGCTG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1018:57947..58991-

>mRNA_H-akashiwo_Contig1018.2.1 ID=mRNA_H-akashiwo_Contig1018.2.1|Name=mRNA_H-akashiwo_Contig1018.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=378bp|location=Sequence derived from alignment at H-akashiwo_Contig1018:57947..58991- (Heterosigma akashiwo CCMP452)
ATGGACCCCGCTGATGCAGCTCCTCAATCTGCAGATATTGCCATCATCCC
CAATGAAAGCCTCAAATTCAATTTGGACGTCAAACCTAAAACCGCTGTCG
TCCAGCTCAAGCTTCAGCACCCTGGTCCATTAGATGCTGCTGTTATGGCG
TACAAAATCAAAACAACTGCCCCAAAGAGATATCTTGTCAGGCCAAACCA
AGGCATGATTCCACCCGGAAAATCCGTCCAAGTAGATATCATTCTGGTTG
ATAGAGACCATATAGTATTACGTGACGACCCTGCGCAACGCGAGGCAGGC
GAAGCCGGGGACAAGTTCCTGGTTCAGACTACTCCGGCTGTGAGTGATGG
GAACCCTGTAATGGATCCAGAGTCGCTG
back to top