mRNA_H-akashiwo_Contig1017.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1017.14.1
Unique NamemRNA_H-akashiwo_Contig1017.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1017.14.1 vs. uniprot
Match: A0A7S3YEY2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY2_HETAK)

HSP 1 Score: 133 bits (335), Expect = 5.520e-37
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 LERAYEAPEGEIASVRKPVLASEVAPVSRGSSTLCLELDCVIYRRLRHINYSNVDRPARLVWVVVAQ 201
            LERAYEAPEGEIASVRKPVLASEVAPVSRGSSTLCLELDCVIYRRLRHINYSNVDRPARLVWVVVAQ
Sbjct:   98 LERAYEAPEGEIASVRKPVLASEVAPVSRGSSTLCLELDCVIYRRLRHINYSNVDRPARLVWVVVAQ 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1017.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YEY2_HETAK5.520e-37100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1017contigH-akashiwo_Contig1017:382262..382669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387052.1803327-CDS-H-akashiwo_Contig1017:382261..3823491681387052.1803327-CDS-H-akashiwo_Contig1017:382261..382349Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1017 382262..382349 +
1681387052.1886067-CDS-H-akashiwo_Contig1017:382554..3826671681387052.1886067-CDS-H-akashiwo_Contig1017:382554..382667Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1017 382555..382667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1017.14.1prot_H-akashiwo_Contig1017.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1017 382262..382667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1017.14.1

>prot_H-akashiwo_Contig1017.14.1 ID=prot_H-akashiwo_Contig1017.14.1|Name=mRNA_H-akashiwo_Contig1017.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=67bp
LERAYEAPEGEIASVRKPVLASEVAPVSRGSSTLCLELDCVIYRRLRHIN
YSNVDRPARLVWVVVAQ
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mRNA from alignment at H-akashiwo_Contig1017:382262..382669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1017.14.1 ID=mRNA_H-akashiwo_Contig1017.14.1|Name=mRNA_H-akashiwo_Contig1017.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=408bp|location=Sequence derived from alignment at H-akashiwo_Contig1017:382262..382669+ (Heterosigma akashiwo CCMP452)
CTGGAGCGTGCTTATGAGGCTCCTGAGGGCGAAATCGCCTCTGTTCGCAA
ACCAGTCCTTGCTTCCGAAGTTGCCCCAGTTTCAAGAGGTAAGCAAGCAC
TGCAACAAGTGTGATCTATGGGGCACTGTGTTGTTTGTTGCTTCAAAGAC
AAAAAGTTGTTCAATGGGTGTGTAAATAAAACACTGAGTGCGTAATAATA
ATGTTGAAAATATTCCGACTTGTTGCGTTTTGGTATATATATATGTAATA
AGACGTGAGATAATATTTTTTTTTGTGTTCTGATGTTTAAAAGGGTCCAG
CACCCTGTGCCTGGAGCTTGACTGTGTGATCTACCGGCGTTTGAGGCACA
TCAACTACAGCAATGTGGACCGGCCGGCAAGGCTTGTTTGGGTTGTGGTG
GCGCAGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1017:382262..382669+

>mRNA_H-akashiwo_Contig1017.14.1 ID=mRNA_H-akashiwo_Contig1017.14.1|Name=mRNA_H-akashiwo_Contig1017.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=201bp|location=Sequence derived from alignment at H-akashiwo_Contig1017:382262..382669+ (Heterosigma akashiwo CCMP452)
CTGGAGCGTGCTTATGAGGCTCCTGAGGGCGAAATCGCCTCTGTTCGCAA
ACCAGTCCTTGCTTCCGAAGTTGCCCCAGTTTCAAGAGGGTCCAGCACCC
TGTGCCTGGAGCTTGACTGTGTGATCTACCGGCGTTTGAGGCACATCAAC
TACAGCAATGTGGACCGGCCGGCAAGGCTTGTTTGGGTTGTGGTGGCGCA
G
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