mRNA_H-akashiwo_Contig1016.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1016.9.1
Unique NamemRNA_H-akashiwo_Contig1016.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Match: A0A7S3Y9Z5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9Z5_HETAK)

HSP 1 Score: 270 bits (689), Expect = 6.500e-91
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 2
Query:   32 MSMECVKAKEVALNGNPHKDLYQDCPLIEIVHFHECLRGELRSLHDNVKRLRSLLDGTKKISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQKALEAAAAAVKTGAGSDADGELRASLISEQDYIEDHEEEEA 454
            MSMECVKAKEVALNGNPHKDLYQDCPLIEIVHFHECLRGELRSLHDNVKRLRSLLDGTKKISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQKALEAAAAAVKTGAGSDADGELRASLISEQDYIEDHEEEEA
Sbjct:    1 MSMECVKAKEVALNGNPHKDLYQDCPLIEIVHFHECLRGELRSLHDNVKRLRSLLDGTKKISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQKALEAAAAAVKTGAGSDADGELRASLISEQDYIEDHEEEEA 141          
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Match: A0A7S2MHG8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHG8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.060e-21
Identity = 64/147 (43.54%), Postives = 84/147 (57.14%), Query Frame = 2
Query:   23 KKGMSMECVKAKEVALNGNPHKDLYQDCPLIEIVHFHECLRGELRSLHDNVKRLR---SLLDGTKKISEEV-LSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQKALEAAAAAVKTGAGSDADGELRASLISEQDYIEDHEEEE 451
            + G+   C+   +  L        + +CPL+EIVH H+C+RGEL +L D VKRLR   +  D    I  +    LE+Q++SQF+LL AVF+AHSTAEDETIWPAL+ K            AG DA        I EQ+Y EDH +EE
Sbjct:    7 RNGLRSRCMSFDDAPLASKS----FANCPLVEIVHLHDCIRGELNTLLDRVKRLRHGVATRDPNSLIESKAHADLELQIRSQFQLLLAVFKAHSTAEDETIWPALRLKTE-------SMQAGGDA--------IEEQEYAEDHADEE 134          
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Match: A0A7S2RAI9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAI9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.160e-18
Identity = 52/138 (37.68%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   29 GMSMECVKAKEVALNGNPHKDLYQDCPLIEIVHFHECLRGELRSLHDNVKRLRSL-LDGTKKISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQKALEAAAAAVKTGAGSDADGELRASLISEQDYIEDH 439
            GM++       V +  +     +  CPL EI+  H+C RGELR+L + +  LR   L GT  + +   SLE++++SQF +L+AVF+AHSTAEDETIWPAL+ K  +   A                  +  ++YIEDH
Sbjct:   27 GMALHVALPTPVLVEASSASKTFAGCPLFEIIELHDCFRGELRTLRERIGHLRDQELSGTPTVLDN--SLELEIRSQFNILYAVFKAHSTAEDETIWPALRAKTKQLGKALA-----------YEDEALHAEEYIEDH 151          
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Match: W7TVL5_9STRA (Zinc finger protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVL5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.170e-18
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 2
Query:   83 HKDLYQDCPLIEIVHFHECLRGELRSLHDNVKRLRSLLDGTKKISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQKA 337
            H+    DCPL+EIVHFH+CLRGE++       +LR+++ G   +S+E + LE ++ +QF  L  VFQAHS AED+ IWPAL++KA
Sbjct:   56 HRAALADCPLVEIVHFHDCLRGEVQLFAAGTAKLRAIVSGRGVLSKEAIDLEARLHAQFLSLRRVFQAHSKAEDDLIWPALREKA 140          
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Match: A0A1Z5KF27_FISSO (Zinc finger protein-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF27_FISSO)

HSP 1 Score: 81.6 bits (200), Expect = 3.590e-15
Identity = 46/124 (37.10%), Postives = 80/124 (64.52%), Query Frame = 2
Query:   83 HKDLYQDCPLIEIVHFHECLRGELRSLHDNVKRL-RSLLDGTKKISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQKALEAAAAAVKTGAGSDADGELRASLISEQDYIEDHEEEE 451
            H++L++DC L+EI+H H+CLRG L++L  +V+ L +++  G++   E+   LE +V  +F+++ +VF+AHS+AEDE IWPAL++K           G         + ++I +++Y EDH +EE
Sbjct:   22 HRELFKDCALVEIIHLHDCLRGSLKALEHDVQDLAKAVRSGSE---EQQRMLEKKVAGRFQVIWSVFRAHSSAEDEFIWPALQRKTQGRIQGHKHKG---------KDAIIEQEEYEEDHADEE 133          
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Match: A0A7S1XWB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWB5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.760e-12
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   77 NPHKDLYQDCPLIEIVHFHECLRGELRSLHDNVKRLRSLLDGTKKISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQK 334
            +P    ++DC L+EIVH H  LRGELRSL  +V  L    +       E  S  + + SQF LL AVF+AHS AED+ IWPAL+ K
Sbjct:   29 DPALAAFEDCALVEIVHLHRALRGELRSLLASVSALAECREA------ECGSQVLHIMSQFNLLWAVFRAHSKAEDDVIWPALRAK 108          
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.270e-12
Identity = 57/171 (33.33%), Postives = 67/171 (39.18%), Query Frame = 2
Query:   86 KDLYQDCPLIEIVHFHECLRGELRSLHDNVKRL-RSLLDGTKKISEEV--------------------------------------------------------------------------------------LSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQKA 337
            +  ++DCPLIEIVHFHECLRGELRSL  NV+ L R + D   K    V                                                                                      L LE++VQSQF+LL AVFQ+HSTAEDE IWPALK+KA
Sbjct:   40 RQAFEDCPLIEIVHFHECLRGELRSLRRNVQTLCRQMRDLHHKTQSAVAGAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTANDASATTPGLMSPSSCAAAGPTAESLPAQHLELEVRVQSQFQLLWAVFQSHSTAEDEVIWPALKEKA 210          
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Match: A0A7S4VUG9_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VUG9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.270e-12
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   86 KDLYQDCPLIEIVHFHECLRGELRSLHDNVKRLRSLLDGT---------------------KKISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQK 334
            +D + DC L+EIVH H+CLRG LR+L  +V  L S +  T                       + +++  LE +V  +FK++ +VF+AHS+AEDE IWPAL+ K
Sbjct:   65 RDEFGDCALVEIVHLHDCLRGALRALQRDVSDLSSTVSLTAVGEDELAILKSNQTEESSSSSSLHDKINELERRVAGRFKVIWSVFRAHSSAEDEFIWPALQSK 168          
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Match: A0A7S1G2H4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G2H4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.960e-12
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 2
Query:   95 YQDCPLIEIVHFHECLRGELRSLHDNVKRLRS-------LLDGTKK--ISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQK 334
            Y DC LIEI+H H+CLRG +R+L  +V+RL++       L+    K  +S  +  +  +V ++F+++ +VF +HS+AEDE IWPAL+ K
Sbjct:   52 YSDCALIEIIHLHDCLRGAIRNLAADVRRLQNSAVSLSNLVPSKNKTEVSPSLSEMARKVAARFQVIWSVFTSHSSAEDEFIWPALRNK 140          
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Match: K0RRK6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RRK6_THAOC)

HSP 1 Score: 71.6 bits (174), Expect = 1.120e-11
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  101 DCPLIEIVHFHECLRGELRSLHDNVKRLRSLLDGTKKISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQKALE----AAAAAVKTGAGSDADGELRASL-------ISEQDYIEDHEEEE 451
            DC L+EI+H H+C RG L  L  +V  L   +      S+ V  L+ +V  +F ++  VF+AHS+AEDE IWPALK K +E    +   A ++   ++ DGE +          I +++Y EDH +EE
Sbjct:   22 DCALVEIIHLHDCFRGALEKLESDVAELCREVSCLVP-SDRVTDLQGRVAGRFSVIWTVFKAHSSAEDEFIWPALKAKQVELPNSSCNCACESSQQANEDGEAQGGRKTSESLNIGQEEYEEDHADEE 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1016.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7S3Y9Z5_HETAK6.500e-91100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2MHG8_9STRA6.060e-2143.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RAI9_9STRA1.160e-1837.68Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
W7TVL5_9STRA1.170e-1849.41Zinc finger protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A1Z5KF27_FISSO3.590e-1537.10Zinc finger protein-like protein n=2 Tax=Fistulife... [more]
A0A7S1XWB5_9STRA1.760e-1247.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6H5L587_9PHAE6.270e-1233.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4VUG9_9STRA6.270e-1238.46Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S1G2H4_9STRA6.960e-1241.57Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
K0RRK6_THAOC1.120e-1136.72Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1016contigH-akashiwo_Contig1016:321365..322119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0RRK6
PFAMszf-CHY,zf-RING_2,zinc_ribbon_6
Model size455
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.34e-12
EggNOG OGsKOG1940@1|root,KOG1940@2759|Eukaryota,2XEYK@2836|Bacillariophyta
DescriptionCHY zinc finger
Cds size423
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387052.02836-UTR-H-akashiwo_Contig1016:321364..3213951681387052.02836-UTR-H-akashiwo_Contig1016:321364..321395Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1016 321365..321395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387052.0393353-CDS-H-akashiwo_Contig1016:321395..3215501681387052.0393353-CDS-H-akashiwo_Contig1016:321395..321550Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 321396..321550 +
1681387052.0570745-CDS-H-akashiwo_Contig1016:321655..3217131681387052.0570745-CDS-H-akashiwo_Contig1016:321655..321713Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 321656..321713 +
1681387052.0745492-CDS-H-akashiwo_Contig1016:321821..3219111681387052.0745492-CDS-H-akashiwo_Contig1016:321821..321911Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 321822..321911 +
1681387052.0837853-CDS-H-akashiwo_Contig1016:321999..3221191681387052.0837853-CDS-H-akashiwo_Contig1016:321999..322119Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 322000..322119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1016.9.1prot_H-akashiwo_Contig1016.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1016 321396..322119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1016.9.1

>prot_H-akashiwo_Contig1016.9.1 ID=prot_H-akashiwo_Contig1016.9.1|Name=mRNA_H-akashiwo_Contig1016.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=141bp
MSMECVKAKEVALNGNPHKDLYQDCPLIEIVHFHECLRGELRSLHDNVKR
LRSLLDGTKKISEEVLSLEMQVQSQFKLLHAVFQAHSTAEDETIWPALKQ
KALEAAAAAVKTGAGSDADGELRASLISEQDYIEDHEEEEA
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mRNA from alignment at H-akashiwo_Contig1016:321365..322119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1016.9.1 ID=mRNA_H-akashiwo_Contig1016.9.1|Name=mRNA_H-akashiwo_Contig1016.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=755bp|location=Sequence derived from alignment at H-akashiwo_Contig1016:321365..322119+ (Heterosigma akashiwo CCMP452)
TGCCCGATATGTGCTAGGACCAAAAAAAGGGATGTCAATGGAGTGTGTCA AAGCAAAAGAGGTCGCCCTCAACGGCAATCCACACAAAGACTTGTATCAG GACTGCCCTTTGATTGAGATCGTCCATTTTCATGAGTGTCTTCGGGGCGA GTTGAGATCACTGCATGACAATGTGAAGAGGCTTAGGTAATACATTCTTG GACAAAAAAATGGTGAAAATCTCGTTCTGGCCCCTTTTTCTTTTGTAATC AAACTTGGTTTGTGGTCTGTTTCTTTGCTCCACACCACCAGGTCGCTGCT TGACGGCACCAAGAAAATCTCAGAAGAAGTGCTATCTCTGGAAATGCAGG TCAACCTTCCTTTTATTTTCAGTAAAGGCAATTGTTCTTCACTTCCACAT ATATTTGAACTATATATCACTTTATACACTCGGCACCATTTCCTCAAATC GCTCCAGGTCCAAAGCCAGTTCAAACTTCTTCATGCTGTTTTTCAAGCTC ATTCAACTGCGGAGGACGAAACCATATGGCCAGCTCTGAAGCAAAAGGTG AGTGAAATAGTTGTTTTTGTCCTTGGTTGCCACAACTTGCGGTTGCTTCA ACGCTAAACCACCTCCTTTCTCTTTCACTGTTCAGGCTCTGGAAGCTGCA GCTGCAGCTGTAAAGACTGGTGCAGGATCAGATGCCGATGGTGAGCTTCG TGCCTCGCTGATAAGCGAACAGGACTACATTGAGGACCATGAGGAGGAGG AGGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1016:321365..322119+

>mRNA_H-akashiwo_Contig1016.9.1 ID=mRNA_H-akashiwo_Contig1016.9.1|Name=mRNA_H-akashiwo_Contig1016.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=423bp|location=Sequence derived from alignment at H-akashiwo_Contig1016:321365..322119+ (Heterosigma akashiwo CCMP452)
ATGTCAATGGAGTGTGTCAAAGCAAAAGAGGTCGCCCTCAACGGCAATCC
ACACAAAGACTTGTATCAGGACTGCCCTTTGATTGAGATCGTCCATTTTC
ATGAGTGTCTTCGGGGCGAGTTGAGATCACTGCATGACAATGTGAAGAGG
CTTAGGTCGCTGCTTGACGGCACCAAGAAAATCTCAGAAGAAGTGCTATC
TCTGGAAATGCAGGTCCAAAGCCAGTTCAAACTTCTTCATGCTGTTTTTC
AAGCTCATTCAACTGCGGAGGACGAAACCATATGGCCAGCTCTGAAGCAA
AAGGCTCTGGAAGCTGCAGCTGCAGCTGTAAAGACTGGTGCAGGATCAGA
TGCCGATGGTGAGCTTCGTGCCTCGCTGATAAGCGAACAGGACTACATTG
AGGACCATGAGGAGGAGGAGGCC
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