mRNA_H-akashiwo_Contig1016.11.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A7S4DJ29_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ29_HETAK) HSP 1 Score: 212 bits (540), Expect = 3.310e-67 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 2 Query: 2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL Sbjct: 101 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 193
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A835Z9Z4_9STRA (Zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z4_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.050e-30 Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 2 Query: 2 GRDFRHCMKCNCCVAL-SAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280 G D+ H CV + SA+ HRC+ +LE +CPICS +F ST++ KGLRCGH LHL+CY+ YV EQ W+RCP+C +SM+DMTEYF QL Sbjct: 108 GVDYCHXXXXXACVTVESADTHRCVTHSLESNCPICSTGMFESTQQVKGLRCGHFLHLNCYREYVRHAEEQAHWYRCPICLRSMEDMTEYFGQL 201
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE) HSP 1 Score: 122 bits (306), Expect = 5.350e-30 Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 2 Query: 2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQLGRWWSRPSPCPRSSAG 328 G D+ CV+++A H CL K+LE DCPIC+ LF ST + KGLRCGH +HL CY+ Y+ + + FW+RCP+CRKSM+DM EYFSQ+ + P P + AG Sbjct: 952 GVDYXXXXXXXXCVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKEYIGRAESREFWYRCPICRKSMEDMREYFSQMDAVVAS-QPMPEAYAG 1059
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A7S1XWB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWB5_9STRA) HSP 1 Score: 120 bits (300), Expect = 3.350e-29 Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 2 Query: 2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQLGRWWSR-PSP 307 G D+RHCM+CN CV L+AE H+CL + L+G CPIC E +F STR K L+CGH++H DCYQ+Y Q + CP+C KS+DDM+EYF+QL + S P P Sbjct: 637 GIDYRHCMRCNACVRLNAE-HKCLDQVLQGACPICLEEVFRSTRPIKALKCGHVMHKDCYQSYRQQA------YTCPICWKSVDDMSEYFTQLDSYISHLPMP 732
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: I2CRN7_NANGC (Zinc ion binding protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRN7_NANGC) HSP 1 Score: 114 bits (285), Expect = 5.760e-29 Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 2 Query: 2 GRDFRHCMKCNCCVALSAEP--HRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280 G DFRHCM CN CV+L+ P H+C+ +AL+ DCP+CSEPLF ST YK L CGH +H CY AY + CP+C+KSM+DM+ +F+ L Sbjct: 100 GIDFRHCMTCNACVSLAVPPERHKCIEQALQRDCPVCSEPLFTSTTHYKVLSCGHSMHRQCYDAYRQTA------YTCPICKKSMEDMSSHFAGL 188
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A7S4R513_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R513_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.680e-28 Identity = 43/93 (46.24%), Postives = 67/93 (72.04%), Query Frame = 2 Query: 2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280 G D+RHCM+CN CV+L+ + H C+P++L+G+CPIC E +F ST +GL+CGH++HL C+ Y+ + CP+C+KS++DM +YF+ L Sbjct: 134 GVDYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCFTMYMRAQS-----YTCPLCKKSIEDMKDYFALL 221
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A7S2RAG1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAG1_9STRA) HSP 1 Score: 114 bits (284), Expect = 7.380e-28 Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 2 Query: 2 GRDFRHCMKCNCCVAL-SAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280 G D+RHCM+CNCCV + HRC+ + LEG+CPIC++ L ST + KGL CGH +HL+CY+ Y A + + CP+C K+MDDM +YFS+L Sbjct: 218 GVDYRHCMRCNCCVEMREGVTHRCISQVLEGNCPICADTLRFSTADLKGLPCGHTMHLECYRQYRA------YSYTCPICLKTMDDMRDYFSRL 305
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: B8C1W5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1W5_THAPS) HSP 1 Score: 110 bits (275), Expect = 9.710e-28 Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 2 Query: 2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280 G D+RHCM+CN CV+L+ + H C+P+ L+G+CPIC E +F ST +GL+CGH++HL C+ Y+ G+ + CP+C+KS DDM EYF+ L Sbjct: 80 GIDYRHCMRCNACVSLT-DDHNCIPQRLQGNCPICHETMFESTEPLRGLKCGHVMHLPCFTMYMR--GQN---YTCPLCKKSADDMKEYFALL 166
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A6U3SMK8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SMK8_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.450e-27 Identity = 43/93 (46.24%), Postives = 67/93 (72.04%), Query Frame = 2 Query: 2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280 G D+RHCM+CN CV+L+ + H C+P++L+G+CPIC E +F ST +GL+CGH++HL C+ Y+ + CP+C+KS++DM +YF+ L Sbjct: 264 GVDYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCFTMYMRAQS-----YTCPLCKKSIEDMKDYFALL 351
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A7S0GAB6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAB6_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.650e-27 Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 2 Query: 2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280 G DFRHCM+CN CV+L H C+ + L+G+CPIC E +F ST +GL+CGH++HL C+ Y+ + CP+C+KS+DDM EYFSQL Sbjct: 390 GIDFRHCMRCNACVSLKDNNHVCITQRLQGNCPICHESMFESTEPLRGLKCGHVMHLSCFNLYMRSQT-----YTCPLCKKSVDDMKEYFSQL 477 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1016.11.1 >prot_H-akashiwo_Contig1016.11.1 ID=prot_H-akashiwo_Contig1016.11.1|Name=mRNA_H-akashiwo_Contig1016.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=116bp GPGLPALHEVQLLRCPQRGAPPVPAQGAGGGLPDLLGAAVRQHARVQGPAback to top mRNA from alignment at H-akashiwo_Contig1016:335002..336552+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1016.11.1 ID=mRNA_H-akashiwo_Contig1016.11.1|Name=mRNA_H-akashiwo_Contig1016.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1551bp|location=Sequence derived from alignment at H-akashiwo_Contig1016:335002..336552+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1016:335002..336552+ >mRNA_H-akashiwo_Contig1016.11.1 ID=mRNA_H-akashiwo_Contig1016.11.1|Name=mRNA_H-akashiwo_Contig1016.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=348bp|location=Sequence derived from alignment at H-akashiwo_Contig1016:335002..336552+ (Heterosigma akashiwo CCMP452)back to top |