mRNA_H-akashiwo_Contig1016.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1016.11.1
Unique NamemRNA_H-akashiwo_Contig1016.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A7S4DJ29_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ29_HETAK)

HSP 1 Score: 212 bits (540), Expect = 3.310e-67
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 2
Query:    2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280
            GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL
Sbjct:  101 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 193          
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A835Z9Z4_9STRA (Zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z4_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.050e-30
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 2
Query:    2 GRDFRHCMKCNCCVAL-SAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280
            G D+ H      CV + SA+ HRC+  +LE +CPICS  +F ST++ KGLRCGH LHL+CY+ YV    EQ  W+RCP+C +SM+DMTEYF QL
Sbjct:  108 GVDYCHXXXXXACVTVESADTHRCVTHSLESNCPICSTGMFESTQQVKGLRCGHFLHLNCYREYVRHAEEQAHWYRCPICLRSMEDMTEYFGQL 201          
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 5.350e-30
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 2
Query:    2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQLGRWWSRPSPCPRSSAG 328
            G D+        CV+++A  H CL K+LE DCPIC+  LF ST + KGLRCGH +HL CY+ Y+ +   + FW+RCP+CRKSM+DM EYFSQ+    +   P P + AG
Sbjct:  952 GVDYXXXXXXXXCVSMNAPSHTCLSKSLESDCPICNNSLFTSTSQVKGLRCGHFMHLACYKEYIGRAESREFWYRCPICRKSMEDMREYFSQMDAVVAS-QPMPEAYAG 1059          
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A7S1XWB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWB5_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.350e-29
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 2
Query:    2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQLGRWWSR-PSP 307
            G D+RHCM+CN CV L+AE H+CL + L+G CPIC E +F STR  K L+CGH++H DCYQ+Y  Q       + CP+C KS+DDM+EYF+QL  + S  P P
Sbjct:  637 GIDYRHCMRCNACVRLNAE-HKCLDQVLQGACPICLEEVFRSTRPIKALKCGHVMHKDCYQSYRQQA------YTCPICWKSVDDMSEYFTQLDSYISHLPMP 732          
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: I2CRN7_NANGC (Zinc ion binding protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRN7_NANGC)

HSP 1 Score: 114 bits (285), Expect = 5.760e-29
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 2
Query:    2 GRDFRHCMKCNCCVALSAEP--HRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280
            G DFRHCM CN CV+L+  P  H+C+ +AL+ DCP+CSEPLF ST  YK L CGH +H  CY AY          + CP+C+KSM+DM+ +F+ L
Sbjct:  100 GIDFRHCMTCNACVSLAVPPERHKCIEQALQRDCPVCSEPLFTSTTHYKVLSCGHSMHRQCYDAYRQTA------YTCPICKKSMEDMSSHFAGL 188          
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A7S4R513_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R513_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.680e-28
Identity = 43/93 (46.24%), Postives = 67/93 (72.04%), Query Frame = 2
Query:    2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280
            G D+RHCM+CN CV+L+ + H C+P++L+G+CPIC E +F ST   +GL+CGH++HL C+  Y+         + CP+C+KS++DM +YF+ L
Sbjct:  134 GVDYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCFTMYMRAQS-----YTCPLCKKSIEDMKDYFALL 221          
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A7S2RAG1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAG1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.380e-28
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 2
Query:    2 GRDFRHCMKCNCCVAL-SAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280
            G D+RHCM+CNCCV +     HRC+ + LEG+CPIC++ L  ST + KGL CGH +HL+CY+ Y A      + + CP+C K+MDDM +YFS+L
Sbjct:  218 GVDYRHCMRCNCCVEMREGVTHRCISQVLEGNCPICADTLRFSTADLKGLPCGHTMHLECYRQYRA------YSYTCPICLKTMDDMRDYFSRL 305          
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: B8C1W5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1W5_THAPS)

HSP 1 Score: 110 bits (275), Expect = 9.710e-28
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 2
Query:    2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280
            G D+RHCM+CN CV+L+ + H C+P+ L+G+CPIC E +F ST   +GL+CGH++HL C+  Y+   G+    + CP+C+KS DDM EYF+ L
Sbjct:   80 GIDYRHCMRCNACVSLT-DDHNCIPQRLQGNCPICHETMFESTEPLRGLKCGHVMHLPCFTMYMR--GQN---YTCPLCKKSADDMKEYFALL 166          
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A6U3SMK8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SMK8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.450e-27
Identity = 43/93 (46.24%), Postives = 67/93 (72.04%), Query Frame = 2
Query:    2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280
            G D+RHCM+CN CV+L+ + H C+P++L+G+CPIC E +F ST   +GL+CGH++HL C+  Y+         + CP+C+KS++DM +YF+ L
Sbjct:  264 GVDYRHCMRCNACVSLADDTHHCIPQSLQGNCPICHESMFQSTEPLRGLKCGHVMHLSCFTMYMRAQS-----YTCPLCKKSIEDMKDYFALL 351          
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Match: A0A7S0GAB6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAB6_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.650e-27
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 2
Query:    2 GRDFRHCMKCNCCVALSAEPHRCLPKALEGDCPICSEPLFVSTREYKGLRCGHLLHLDCYQAYVAQGGEQLFWFRCPVCRKSMDDMTEYFSQL 280
            G DFRHCM+CN CV+L    H C+ + L+G+CPIC E +F ST   +GL+CGH++HL C+  Y+         + CP+C+KS+DDM EYFSQL
Sbjct:  390 GIDFRHCMRCNACVSLKDNNHVCITQRLQGNCPICHESMFESTEPLRGLKCGHVMHLSCFNLYMRSQT-----YTCPLCKKSVDDMKEYFSQL 477          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1016.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DJ29_HETAK3.310e-67100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z9Z4_9STRA1.050e-3054.26Zinc ion binding protein n=1 Tax=Tribonema minus T... [more]
A0A6H5L587_9PHAE5.350e-3048.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1XWB5_9STRA3.350e-2953.40Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
I2CRN7_NANGC5.760e-2951.58Zinc ion binding protein n=1 Tax=Nannochloropsis g... [more]
A0A7S4R513_9STRA1.680e-2846.24Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2RAG1_9STRA7.380e-2851.06Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
B8C1W5_THAPS9.710e-2849.46Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6U3SMK8_9STRA1.450e-2746.24Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0GAB6_9STRA1.650e-2750.54Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1016contigH-akashiwo_Contig1016:335002..336552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons4
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387051.8083074-CDS-H-akashiwo_Contig1016:335001..3350521681387051.8083074-CDS-H-akashiwo_Contig1016:335001..335052Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 335002..335052 +
1681387051.818533-CDS-H-akashiwo_Contig1016:335210..3353431681387051.818533-CDS-H-akashiwo_Contig1016:335210..335343Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 335211..335343 +
1681387051.8294334-CDS-H-akashiwo_Contig1016:335672..3357651681387051.8294334-CDS-H-akashiwo_Contig1016:335672..335765Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 335673..335765 +
1681387051.8419113-CDS-H-akashiwo_Contig1016:336481..3365521681387051.8419113-CDS-H-akashiwo_Contig1016:336481..336552Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 336482..336552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1016.11.1prot_H-akashiwo_Contig1016.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1016 335002..336552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1016.11.1

>prot_H-akashiwo_Contig1016.11.1 ID=prot_H-akashiwo_Contig1016.11.1|Name=mRNA_H-akashiwo_Contig1016.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=116bp
GPGLPALHEVQLLRCPQRGAPPVPAQGAGGGLPDLLGAAVRQHARVQGPA
LRAPPAPGLLPGLRGPGRGAALLVPLPRLPQEHGRHDRVFLPAGTVVVAA
QPMPPELRGRRVRVL*
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mRNA from alignment at H-akashiwo_Contig1016:335002..336552+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1016.11.1 ID=mRNA_H-akashiwo_Contig1016.11.1|Name=mRNA_H-akashiwo_Contig1016.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1551bp|location=Sequence derived from alignment at H-akashiwo_Contig1016:335002..336552+ (Heterosigma akashiwo CCMP452)
GGGCCGGGACTTCCGGCACTGCATGAAGTGCAACTGCTGCGTTGCCCTCA GGTGGGGGCGGGCCTCTGACTGCTGCGTTGAAATTCCCCGGCCTTTGGAG GAGTTCAGGAGCCCGACTCCTCCGCGCCCCGCCGCGCCCCGCGTTCTTCA CGTCGCGACCGCCCCCAGGCCCCGCCCCCCGACCACGACGCCCCCCCGCC CCGCCGCAGCGCGGAGCCCCACCGGTGCCTGCCCAAGGCGCTGGAGGGGG ACTGCCCGATCTGCTCGGAGCCGCTGTTCGTCAGCACGCGCGAGTACAAG GGCCTGCGCTGCGGGCACCTCCTGCACCTGGACTGCTACCAGGTGGGGCA CTGTTGTGGGGGGCAATTCTGCTACGGGGAGTTGGCCCTCGGGAGGGGGG GAGCTCCGCCGCGGGGAGGGGTGAAGTTTCCATGCGGCGCGAGCCTTGAC CACGCCCGGATGGGGGCTCTGCCATCTTGGAAGAGTTGGGGCTCCCCTGT GTGTGCGCTGTATGTTGTGCGACGGTTGTGTGCCCATCATGCGTGTTTGT GTGTTTGTGTTTGTGTTTGTGGGCGCGCTCCCTCCCCCCGTCGAGAGGAA GCAGGCGCACAAACAGCCAACACGAACAAACGGCCGACACCACAAACCAC CAACCGCCGACCGCGCCGCAGGCCTACGTGGCCCAGGGCGGGGAGCAGCT CTTCTGGTTCCGCTGCCCCGTCTGCCGCAAGAGCATGGACGACATGACCG AGTATTTCTCCCAGGTCGGTCGGGTCGACCGGCCGGCCGGCGGTGGGGGG GCGCGCGCTGGGGCTGCCTTTCCCTCTGCCCTCCGTGCTCTTCGGGGCAA GATTGCGGCGGGCCACTTTTTGAATGAAGTAATGGTTCGTGCATAAAGAT GGAAAGAGACTTCATTAATTAATAGGAAGGACCATCCATCAGGGCATAGG AAATTCCAGAAGGAAGACGTTGACCCAGTCTAATGCTCCACGGACACCAT CAAAGCTTAAAGGCCAAGGCCATAAATACTGCTATAGCGCATGAAATACA ACATCATGAAACTATAATATGTGATTCCAATATTTTAAAAGGACTGTTGC ACACCGGTTTCGGCTATAAAAGCCATCGTCAGTACAACTAGTGTCCAACT TCATTATGTCGCCAGTTATTTCCTTTTGGAAGCATCTTGTTGGTTGTTGT AATTCAGCAGTTCATTCCATGCAAGTTCCTTTTTTCGTGCCATTCATATC TTTGCCCGTTCTCGCTTTTGGGGGGAAAGGGCAGTTTTAGATTCAGTTGT TGGCTGCAAAGCATTCCGCTGGATACTACACCACCAGCGTGATGAGTTCA TGCATATGTATATATGTTATACATGCAATATAGGGTCAATATCTTTGTCG TGGATTTTTTTTTCCCCCCAATCCCTGTCTAGCCACGCACGCACACCTCT TTCCCGTCCGTGCCCCCCCTTCCCCGTCAGCTGGGACGGTGGTGGTCGCG GCCCAGCCCATGCCCCCGGAGCTCCGCGGGCGCCGGGTGCGCGTGCTGTG A
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1016:335002..336552+

>mRNA_H-akashiwo_Contig1016.11.1 ID=mRNA_H-akashiwo_Contig1016.11.1|Name=mRNA_H-akashiwo_Contig1016.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=348bp|location=Sequence derived from alignment at H-akashiwo_Contig1016:335002..336552+ (Heterosigma akashiwo CCMP452)
GGGCCGGGACTTCCGGCACTGCATGAAGTGCAACTGCTGCGTTGCCCTCA
GCGCGGAGCCCCACCGGTGCCTGCCCAAGGCGCTGGAGGGGGACTGCCCG
ATCTGCTCGGAGCCGCTGTTCGTCAGCACGCGCGAGTACAAGGGCCTGCG
CTGCGGGCACCTCCTGCACCTGGACTGCTACCAGGCCTACGTGGCCCAGG
GCGGGGAGCAGCTCTTCTGGTTCCGCTGCCCCGTCTGCCGCAAGAGCATG
GACGACATGACCGAGTATTTCTCCCAGCTGGGACGGTGGTGGTCGCGGCC
CAGCCCATGCCCCCGGAGCTCCGCGGGCGCCGGGTGCGCGTGCTGTGA
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