mRNA_H-akashiwo_Contig1016.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1016.10.1
Unique NamemRNA_H-akashiwo_Contig1016.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Match: A0A7S4DJ29_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJ29_HETAK)

HSP 1 Score: 173 bits (439), Expect = 3.070e-52
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1
Query:   70 CHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR 291
            CHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR
Sbjct:   22 CHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR 95          
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Match: A0A835SJY4_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SJY4_CHLIN)

HSP 1 Score: 99.8 bits (247), Expect = 2.440e-22
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   49 GSSTPAACHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR 291
            G  T   CHD+   H+MDRY +  M+CM C E QPVG  CR  AC     P++RY C IC LFDD PGK IYHCP+CN+CR
Sbjct: 1634 GVYTCRLCHDEAADHRMDRYAVAEMRCMACGERQPVGPSCR--ACA---SPMARYVCNICHLFDDEPGKDIYHCPFCNVCR 1709          
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 8.360e-22
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   70 CHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYS----KEP-----LSRYYCAICKLFDDAPGKAIYHCPYCNLCR 291
            CHDQ   HK+DR  +  M CM CE  QP+   CRN +C+ +    K P     ++RYYC IC LFDDAP K IYHCPYCN+CR
Sbjct:  864 CHDQVSDHKVDREEVTEMLCMRCETLQPINSECRNHSCRPAAAEGKPPCTGRKMARYYCGICHLFDDAPEKDIYHCPYCNVCR 946          
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Match: A0A2K3DRZ9_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DRZ9_CHLRE)

HSP 1 Score: 97.8 bits (242), Expect = 1.160e-21
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 1
Query:   49 GSSTPAACHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR 291
            G  T   CHD+   H+MDRY +  M+CM C E QPV   CR  AC  +   ++RYYC IC LFDD PGK IYHCP+CN+CR
Sbjct: 1730 GVYTCRLCHDEAADHRMDRYAVSEMRCMSCGERQPVAAACR--ACAAN---MARYYCNICHLFDDEPGKDIYHCPFCNVCR 1805          
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Match: I2CRN7_NANGC (Zinc ion binding protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRN7_NANGC)

HSP 1 Score: 90.9 bits (224), Expect = 3.250e-20
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   70 CHDQE-QGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR 291
            CHDQ    H MDRY +  + CM C E QP  + CRN  C++     S YYC IC+L+DD  GKAIYHCPYCN+CR
Sbjct:   23 CHDQALTDHAMDRYAVAEICCMRCGELQPPARTCRNPHCRHV---FSAYYCDICRLYDDDVGKAIYHCPYCNVCR 94          
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Match: A0A6A0A395_HAELA (Uncharacterized protein n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A395_HAELA)

HSP 1 Score: 89.7 bits (221), Expect = 4.320e-20
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   55 STPAA-CHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR 291
            S PA  CHD+ + H+MDRY +  M CM C   QPV   C   A K     L+RYYC IC L DD PG++IYHCP+CN+CR
Sbjct:    2 SRPARLCHDEAETHRMDRYAVTEMVCMECGVQQPVAGECWACAAK-----LARYYCNICHLLDDEPGRSIYHCPFCNVCR 76          
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Match: A0A150GNV4_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GNV4_GONPE)

HSP 1 Score: 92.8 bits (229), Expect = 6.560e-20
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   70 CHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR 291
            CHD+   H+MDRY +  M+CM C E QPVG  CR          ++RY C IC LFDD PGK IYHCP+CN+CR
Sbjct: 1206 CHDEACDHRMDRYAVSEMRCMLCGERQPVGGNCR-----VCHSAMARYVCNICHLFDDEPGKDIYHCPFCNVCR 1274          
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Match: A0A835XVX6_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XVX6_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 6.570e-20
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   70 CHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR 291
            CHD+   H+MDRY +  M+CM C E QPV   CR  AC  +   ++RY C IC LFDD PGK IYHCP+CN+CR
Sbjct: 1346 CHDEASDHRMDRYAVSEMRCMLCGERQPVAGTCR--ACSGA---MARYVCNICHLFDDEPGKDIYHCPFCNVCR 1414          
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Match: A0A2P6TED0_CHLSO (LOV domain-containing isoform B n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TED0_CHLSO)

HSP 1 Score: 92.8 bits (229), Expect = 6.690e-20
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   70 CHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR 291
            CHD+ + H++DRY +  M CM C   QPV   C   AC     P++RYYC+IC LFDD PG+ IYHCP+CN CR
Sbjct: 1273 CHDEAEDHQVDRYAVSEMVCMECATRQPVAASC--SACD---APMARYYCSICHLFDDEPGRHIYHCPFCNFCR 1341          
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Match: A0A2V0PEX6_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PEX6_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 1.670e-19
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   70 CHDQEQGHKMDRYRIHTMKCMGCEETQPVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR 291
            CHD+   H+MDRY +  M CM C   QPV       AC    E  +RYYC+IC LFDD PG++IYHCP+CN+CR
Sbjct: 1320 CHDEASDHRMDRYSVAEMVCMPCGLRQPVAA-----ACARCGEGAARYYCSICHLFDDEPGRSIYHCPFCNVCR 1388          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1016.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DJ29_HETAK3.070e-52100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835SJY4_CHLIN2.440e-2255.56Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A6H5L587_9PHAE8.360e-2253.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2K3DRZ9_CHLRE1.160e-2154.32Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
I2CRN7_NANGC3.250e-2054.67Zinc ion binding protein n=1 Tax=Nannochloropsis g... [more]
A0A6A0A395_HAELA4.320e-2052.50Uncharacterized protein n=2 Tax=Haematococcus lacu... [more]
A0A150GNV4_GONPE6.560e-2054.05Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A835XVX6_9CHLO6.570e-2055.41Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A2P6TED0_CHLSO6.690e-2052.70LOV domain-containing isoform B n=2 Tax=Chlorella ... [more]
A0A2V0PEX6_9CHLO1.670e-1952.70Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1016contigH-akashiwo_Contig1016:333983..334988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FUX1
PFAMsHemerythrin,zf-CHY,zf-RING_2,zinc_ribbon_6
Model size293
Max annot lvl2759|Eukaryota
KEGG koko:K16276
Hectar predicted targeting categorymitochondrion
Exons3
Evalue3.95e-23
EggNOG OGsKOG1940@1|root,KOG1940@2759|Eukaryota
Descriptionzinc ion binding
Cds size291
COG categoryS
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387052.1151037-CDS-H-akashiwo_Contig1016:333982..3340931681387052.1151037-CDS-H-akashiwo_Contig1016:333982..334093Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 333983..334093 +
1681387052.1387205-CDS-H-akashiwo_Contig1016:334259..3343571681387052.1387205-CDS-H-akashiwo_Contig1016:334259..334357Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 334260..334357 +
1681387052.1500103-CDS-H-akashiwo_Contig1016:334905..3349871681387052.1500103-CDS-H-akashiwo_Contig1016:334905..334987Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 334906..334987 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1016.10.1prot_H-akashiwo_Contig1016.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1016 333983..334987 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1016.10.1

>prot_H-akashiwo_Contig1016.10.1 ID=prot_H-akashiwo_Contig1016.10.1|Name=mRNA_H-akashiwo_Contig1016.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=97bp
VRRLPGGGRWCRRRAAGSSTPAACHDQEQGHKMDRYRIHTMKCMGCEETQ
PVGQYCRNKACKYSKEPLSRYYCAICKLFDDAPGKAIYHCPYCNLCR
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mRNA from alignment at H-akashiwo_Contig1016:333983..334988+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1016.10.1 ID=mRNA_H-akashiwo_Contig1016.10.1|Name=mRNA_H-akashiwo_Contig1016.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1006bp|location=Sequence derived from alignment at H-akashiwo_Contig1016:333983..334988+ (Heterosigma akashiwo CCMP452)
GTGCGCAGACTACCGGGCGGCGGGCGATGGTGCAGGCGCCGTGCTGCGGG CTCTTCTACCCCTGCCGCCTGCCACGACCAGGAGCAGGGGCACAAGATGG ACCGCTACCGAGTGCGTGCGGGCACCGCCCCTGCCCACTTCCACCCTTGA TGGGGCCGGTCTGGCCGCTTTCGTTGTGCTTGAATTCGATCTCATGGCAC TGCCCCCTCCCTCTCCCCCTCTTGATTTTATAAACCCTACACTAACTACA ATATGTATGAATACCTCTGCCGCTCAGATTCACACCATGAAGTGCATGGG CTGCGAAGAGACACAGCCTGTGGGTCAGTATTGTCGGAACAAAGCCTGCA AGTACAGTAAAGAACCCCTGTCAAGGTATTTGCTACACTTTACACTGTAC ATAATACATAATACATAATATATTATTTAAAGTACATGTCATAAATATCT ATCATCCCATTCTGTTTGACTCTTTTTACACTGCACATGTGGTATGTTTT GGTGTATCTCACATGCGCGACGTATAGATGATGGATTTGTTGCCTTTGTC TGCTTTAAGTGGCTCTTTTCTTTTTCCTTCCTTTCTTCCCCCCGCTGCAA TCCAACACTTCGTCTTCATCGTGCAATTTTCTTTTCTTTTCTTTTCTACG TTATCCTGCAATACCATGCTGTCATGCATTTAAGTATCGCCAAAAAATCC ATGAAAACAAACCAGCACATGCATTCTTGACTTGGCCTGAATTCCCACTC TTTTCTTGCTGTGCCCTGGACACCTCTTCTTTGCCCTGAATTCCTGCACC ACACAACCAATCTGAGAACCATCTCTCCTCCTGGCCTCGGTGACCCGCTT CACTCAAGCATATTGCATTCCTTTCCCCGTCCTCCTTGCCCGCTCTGTAC CTGGGCGTTGGCGTGGGGGGCAGGTACTACTGCGCCATCTGCAAGCTGTT CGACGACGCCCCCGGGAAGGCGATCTACCACTGCCCGTACTGCAACCTCT GCCGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1016:333983..334988+

>mRNA_H-akashiwo_Contig1016.10.1 ID=mRNA_H-akashiwo_Contig1016.10.1|Name=mRNA_H-akashiwo_Contig1016.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=291bp|location=Sequence derived from alignment at H-akashiwo_Contig1016:333983..334988+ (Heterosigma akashiwo CCMP452)
GTGCGCAGACTACCGGGCGGCGGGCGATGGTGCAGGCGCCGTGCTGCGGG
CTCTTCTACCCCTGCCGCCTGCCACGACCAGGAGCAGGGGCACAAGATGG
ACCGCTACCGAATTCACACCATGAAGTGCATGGGCTGCGAAGAGACACAG
CCTGTGGGTCAGTATTGTCGGAACAAAGCCTGCAAGTACAGTAAAGAACC
CCTGTCAAGGTACTACTGCGCCATCTGCAAGCTGTTCGACGACGCCCCCG
GGAAGGCGATCTACCACTGCCCGTACTGCAACCTCTGCCGG
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