mRNA_H-akashiwo_Contig1016.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1016.1.1
Unique NamemRNA_H-akashiwo_Contig1016.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1016.1.1 vs. uniprot
Match: A0A7S3XYL3_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYL3_HETAK)

HSP 1 Score: 188 bits (477), Expect = 5.090e-56
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:    1 IVLITIGYLCFSKHEVAHSVRRKLYPMGPSCDEDGYQDVYDNCQSQHWHDTSSCDDTTNFYKCLQEETFACYEYYVPACHSNITS 255
            IVLITIGYLCFSKHEVAHSVRRKLYPMGPSCDEDGYQDVYDNCQSQHWHDTSSCDDTTNFYKCLQEETFACYEYYVPACHSNITS
Sbjct:   28 IVLITIGYLCFSKHEVAHSVRRKLYPMGPSCDEDGYQDVYDNCQSQHWHDTSSCDDTTNFYKCLQEETFACYEYYVPACHSNITS 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1016.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XYL3_HETAK5.090e-56100.00Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1016contigH-akashiwo_Contig1016:44929..45316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size257
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387051.7666955-CDS-H-akashiwo_Contig1016:44928..449861681387051.7666955-CDS-H-akashiwo_Contig1016:44928..44986Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 44929..44986 +
1681387051.7772536-CDS-H-akashiwo_Contig1016:45117..453141681387051.7772536-CDS-H-akashiwo_Contig1016:45117..45314Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1016 45118..45314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1016.1.1prot_H-akashiwo_Contig1016.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1016 44929..45314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1016.1.1

>prot_H-akashiwo_Contig1016.1.1 ID=prot_H-akashiwo_Contig1016.1.1|Name=mRNA_H-akashiwo_Contig1016.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=85bp
IVLITIGYLCFSKHEVAHSVRRKLYPMGPSCDEDGYQDVYDNCQSQHWHD
TSSCDDTTNFYKCLQEETFACYEYYVPACHSNITS
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mRNA from alignment at H-akashiwo_Contig1016:44929..45316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1016.1.1 ID=mRNA_H-akashiwo_Contig1016.1.1|Name=mRNA_H-akashiwo_Contig1016.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=388bp|location=Sequence derived from alignment at H-akashiwo_Contig1016:44929..45316+ (Heterosigma akashiwo CCMP452)
ATTGTTCTGATTACAATTGGCTACTTGTGCTTCAGTAAACATGAAGTCGC
TCATTCTGGTAAGGATAAGAGCATAAGAAACTTACACACCTTCGAAACAG
TACTCACGAGTTCCGCTGCACTGCAATTCACGTATTTCGTATCCCACCCG
AACCATATTTTGCTGGTCCTCCATTTCCACCTCCAACAGTTCGACGAAAG
CTCTATCCAATGGGGCCCTCCTGTGACGAGGATGGCTACCAAGACGTGTA
TGATAACTGCCAGTCGCAACACTGGCATGACACATCTAGCTGCGACGACA
CAACGAACTTCTACAAATGTTTACAGGAAGAAACCTTCGCCTGTTATGAA
TACTATGTCCCTGCGTGTCACTCAAACATAACATCGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1016:44929..45316+

>mRNA_H-akashiwo_Contig1016.1.1 ID=mRNA_H-akashiwo_Contig1016.1.1|Name=mRNA_H-akashiwo_Contig1016.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=255bp|location=Sequence derived from alignment at H-akashiwo_Contig1016:44929..45316+ (Heterosigma akashiwo CCMP452)
ATTGTTCTGATTACAATTGGCTACTTGTGCTTCAGTAAACATGAAGTCGC
TCATTCTGTTCGACGAAAGCTCTATCCAATGGGGCCCTCCTGTGACGAGG
ATGGCTACCAAGACGTGTATGATAACTGCCAGTCGCAACACTGGCATGAC
ACATCTAGCTGCGACGACACAACGAACTTCTACAAATGTTTACAGGAAGA
AACCTTCGCCTGTTATGAATACTATGTCCCTGCGTGTCACTCAAACATAA
CATCG
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