mRNA_H-akashiwo_Contig1015.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1015.5.1
Unique NamemRNA_H-akashiwo_Contig1015.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1015.5.1 vs. uniprot
Match: UPI001BC68BD1 (Uncharacterized protein n=1 Tax=Ignavibacteriales bacterium TaxID=2049428 RepID=UPI001BC68BD1)

HSP 1 Score: 57.8 bits (138), Expect = 2.980e-8
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:   79 NLELARALVAALEELPRPLVLQCRSANRASAPLAMYLAKKNQWTADQTQEYGEKSELPFVGVPKLAEWVRNYVESL 306
            +L+LAR  V AL+ LPRP ++ CR+  RASA   MY   K     D+     EK   PF    +  +WVR+ +ESL
Sbjct:   71 SLDLARQHVEALDSLPRPTLISCRTGPRASAVAYMYSGLKLGVEPDEVLAAAEKDNAPFTQFEEYKDWVRSSIESL 146
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BLAST of mRNA_H-akashiwo_Contig1015.5.1 vs. uniprot
Match: A0A538I8E2_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538I8E2_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 1.580e-7
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   79 NLELARALVAALEELPRPLVLQCRSANRASAPLAMYLAKKNQWTADQTQEYGEKSELPFVGVPKLAEWVRNYVESLS 309
            ++ LAR  VAAL++LPRP ++ CR+  R+SA + +Y   ++   AD+     E    PF G P+L  WV   +  LS
Sbjct:   71 DMNLARKHVAALDQLPRPTLVTCRTGPRSSAVVYLYAGLRSGAGADEVLARAEGDGAPFTGSPELKAWVAQGLAELS 147
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BLAST of mRNA_H-akashiwo_Contig1015.5.1 vs. uniprot
Match: A0A3C1CG08_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1CG08_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 3.110e-7
Identity = 34/98 (34.69%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:   22 FGEGHA---RQLPVVVTDALPANLELARALVAALEELPRPLVLQCRSANRASAPLAMYLAKKNQWTADQTQEYGEKSELPFVGVPKLAEWVRNYVESL 306
            +GE  A   R   VV    +P +++LAR  VAAL+ELPRP ++ CR+  R+SA + +Y   +    AD+     E    P+    +L  WVR  +  L
Sbjct:   49 YGEVQAAVDRSANVVSDPPVPLDMDLARRQVAALDELPRPTLVTCRTGPRSSALVYLYAGLRAGAPADEVVARAEADGAPWAQSDELKAWVRQGLAEL 146
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BLAST of mRNA_H-akashiwo_Contig1015.5.1 vs. uniprot
Match: A0A812QRB5_SYMPI (ETHE1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QRB5_SYMPI)

HSP 1 Score: 53.5 bits (127), Expect = 4.680e-6
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:   94 RALVAALEELPRPLVLQCRSANRASAPLAMYLAKKNQWTADQTQEYGEKSELPFVGVPKLAEWVRNYVESLS 309
            RAL+ A++ELPRPLV+QC +ANR+   L ++LA    +TA+      +  EL  V +  LA W+R  +  LS
Sbjct:    2 RALIDAIDELPRPLVIQCTTANRSGIALLLWLAHARGYTAECADRLVKDLELDTVKLEALA-WLREKLPKLS 72
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BLAST of mRNA_H-akashiwo_Contig1015.5.1 vs. uniprot
Match: A0A813JII2_POLGL (Hypothetical protein n=6 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JII2_POLGL)

HSP 1 Score: 52.8 bits (125), Expect = 9.500e-6
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:   73 PANLELARALVAALEELPRPLVLQCRSANRASAPLAMYLAKKNQWTADQTQEYGEKSELPF----VGVPKLAEWVRNYVES 303
            P + E    LV AL+ LPRPLVLQC S NRA A L ++LA++  ++A   Q+  E  +L F         + +WV  ++ S
Sbjct:  164 PKDEEGGLKLVEALDSLPRPLVLQCASGNRAGAILLLWLARQRGYSAASAQQLAEDLDLKFFTRCATCGPVRDWVLGHLPS 244
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BLAST of mRNA_H-akashiwo_Contig1015.5.1 vs. uniprot
Match: A0A090M562_OSTTA (Beta-lactamase-like n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M562_OSTTA)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-5
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:   88 LARALVAALEELPRPLVLQCRSANRASAPLAMYLAKKNQWTADQTQEYGEKSELPFVGVPKLAEWVRNYVES 303
            LA AL  A+E LPRP ++QC +A RAS    +Y A++ +W      +   +  L F   P LA +VR+ + S
Sbjct:   77 LANALTEAMETLPRPTMVQCSTATRASIAYILYKAREKKWPQAGALQRAREMGLKFFSKPPLAAFVRDSLRS 148
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BLAST of mRNA_H-akashiwo_Contig1015.5.1 vs. uniprot
Match: A0A1Y5I1I8_OSTTA (Beta-lactamase-like protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I1I8_OSTTA)

HSP 1 Score: 52.0 bits (123), Expect = 1.780e-5
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:   88 LARALVAALEELPRPLVLQCRSANRASAPLAMYLAKKNQWTADQTQEYGEKSELPFVGVPKLAEWVRNYVES 303
            LA AL  A+E LPRP ++QC +A RAS    +Y A++ +W      +   +  L F   P LA +VR+ + S
Sbjct:  214 LANALTEAMETLPRPTMVQCSTATRASIAYILYKAREKKWPQAGALQRAREMGLKFFSKPPLAAFVRDSLRS 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1015.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI001BC68BD12.980e-840.79Uncharacterized protein n=1 Tax=Ignavibacteriales ... [more]
A0A538I8E2_9ACTN1.580e-737.66Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A3C1CG08_9ACTN3.110e-734.69Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A812QRB5_SYMPI4.680e-641.67ETHE1 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A813JII2_POLGL9.500e-638.27Hypothetical protein n=6 Tax=Polarella glacialis T... [more]
A0A090M562_OSTTA1.710e-537.50Beta-lactamase-like n=1 Tax=Ostreococcus tauri Tax... [more]
A0A1Y5I1I8_OSTTA1.780e-537.50Beta-lactamase-like protein n=1 Tax=Ostreococcus t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1015contigH-akashiwo_Contig1015:264009..266879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog72019.SARC_01458T0
PFAMsAminotran_5
Model size316
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.34e-07
EggNOG OGsCOG0520@1|root,KOG2142@2759|Eukaryota,38F30@33154|Opisthokonta
Descriptionmolybdenum cofactor sulfurtransferase activity
Cds size315
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387051.7254882-CDS-H-akashiwo_Contig1015:264008..2642061681387051.7254882-CDS-H-akashiwo_Contig1015:264008..264206Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1015 264009..264206 +
1681387051.7362921-CDS-H-akashiwo_Contig1015:266762..2668791681387051.7362921-CDS-H-akashiwo_Contig1015:266762..266879Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1015 266763..266879 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1015.5.1prot_H-akashiwo_Contig1015.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1015 264009..266879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1015.5.1

>prot_H-akashiwo_Contig1015.5.1 ID=prot_H-akashiwo_Contig1015.5.1|Name=mRNA_H-akashiwo_Contig1015.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=105bp
QEGLLPLFGEGHARQLPVVVTDALPANLELARALVAALEELPRPLVLQCR
SANRASAPLAMYLAKKNQWTADQTQEYGEKSELPFVGVPKLAEWVRNYVE
SLSS*
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mRNA from alignment at H-akashiwo_Contig1015:264009..266879+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1015.5.1 ID=mRNA_H-akashiwo_Contig1015.5.1|Name=mRNA_H-akashiwo_Contig1015.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2871bp|location=Sequence derived from alignment at H-akashiwo_Contig1015:264009..266879+ (Heterosigma akashiwo CCMP452)
CAGGAGGGTCTGCTCCCGCTGTTTGGGGAGGGGCACGCCCGTCAACTGCC
CGTGGTGGTAACGGACGCCCTCCCGGCAAACCTCGAGCTCGCGCGCGCGC
TGGTGGCCGCCCTCGAGGAGCTGCCGCGCCCGCTCGTGCTCCAGTGCCGC
TCGGCCAACCGCGCCAGCGCCCCCCTGGCCATGTACCTTGCCAAGAAGGT
GGGGCGGGGGCGGGGCGGGGCGGCGGGGTCCGGGGCGACCCCTGCTGGGT
CGGGGGGCTGCCGCCAGCGCGGTGGGTGCCCGTGTGTCCTCCCCAGCCCC
GCTCGGTGCAAGGAAGGTGCCCGCGTGCCCTGCTGCTGCCGGTGGGAGTG
CCCCGCACTTCCTGCCGGCATCTCGGTTGCCGCCGGTGCAAGTTCCTGCT
GAATTTTCTGCCCTACCCTGCCCCAACCCTGCCTTCCTGTTCTCTTTCGA
ATTGTTTGCCGTGTGTTGCTATACTTCGCCCTTTTTTTGGATGATTATAT
GCCCACAAATCCTACCAACGTCTCCTTGGGCTATGTAGGTCACTGCCATC
GAGTGTCAGTTCCATATTCTCCCCACCCCCCAACTTCTTCTCTCTGTTCT
GCTTCCCTAATAAGTTCTTTTCTGGAATGTTTTTTCTGTAACTGTCGATG
ACGTGTTGATGTACGTTTGAGCGAAGATACCATACCATCTGATGTATGTT
TTAGGGTTTGTCTCGCTAGCGCTACACGAACCAAATATAGCTCGAAATAC
CCCCCAACTAGTCACTCAATAGTGTGCCGGACTAAGTACTAGATTGTGAA
GGTGGTGTTTTTATTTTTTTTTATTATCTACGTTTATTCATTACACAATG
CCACCCCCCACTACACAGTAGCACACTTCACTGTTATTGTACAACATACA
GCCAAATTCTGGCAACTCATTGGAGCAGTTCCTTGGTGGTATAGAAGGGA
CCTTGGCTACTCCTCCAGTCTTTGACTGTTGGGCGATGTTCCAGTGATTC
ATGGCGCTGCCTTACTTCCAGCACTCCAGGCTTTTCTTCTTCAAGACTCT
TTCTTCCAGCCTTTACATCTTAATAGCAGGTAAGTAGTATTAAAAGCCAC
TTCCATCATCAGTGAGTCTGCCCCACACTGCTAAAGCAAAATTTATCAAT
CCACAAGGCTTTTTTCATCAGCACTAGATTTGACGCAGACAACGCTGTTT
CAGCAATCATAAACCATATGATAATCAGTAGTAGTGTGAAGGTGAATGAA
GTGCAGCTCAGAAAAAAGGGAAAACTTAGTACATAGTAGCAGAAAAATCG
CCACTTACAACAGTTCTTCCTTCCTGTTTCGCCAGTTTGTTCACTGAAAG
CAGCAACAGACTAAGGAAACATTCTCCCCTCCTCCTTCGTCTTTAGATGT
TTACTGCTGATCTGAGCATTATCATCACGATATCATTCTTTTTTTTTTTT
AGAAAAATATAAAATCTGATCTACAGTGCATTTATCTCGGTGAGTGTCCA
ACAAAGCACCCCAGAAGTGAAACCTTTTTTTTTTTTTAGAAAACACAAAA
TCTGATCTACAATGCATTTATCTCGGTGAGTGTGCAACCAAACACCTCAA
AAGTGAAACAAGCGACACAAAGTGTTCAGATGTCAAGGCGGCCTGCAAGC
AGACAGTAGTTGTGGCTCAGGATGGGAGAGGGGCACATTGCAAGTTAGGA
ACGTAGAAAAAAAAGAAGAAAAAAACGAAATATTATCAAGAAGAGAAGCA
CAGCCACAGTGTCCGACCGACCAAGAAGTGAATGTATATGAAGATGATCT
GTAAGTAGCTACTACCACCATTTCAGTCTATTATTCAGTTTCATTTTGTT
TTGACAATTCCAGGGGGAGGTGATAGCCACTCGTGATTTTGTCTTCCGCT
TTACTCAGGTTTACAGCGATGTATATAATGGAATATTCCTTTTCGCTATA
GCTTGCTATTAGAGGAGGATACGAGGCTTTATTTAGGTATGCAATATGCG
GTGGTCGTGAGAGCGCAGCATTTTCTTCTTCTTCTTTTTGACTTGCCGTG
GTGGAAAATATCGTATATGGGGCTCGAACCTGTGTACGGTAGCATGGGAT
TCGAACCCGTGATTCCAACCCATGGTCGTGGGATTCGAACCCGTGGTACG
CTGAAATCTGTATCAACCATCGCAGTCAGACGCCCTACCCATTCGGGCAG
TCTATCGTGACGAATGTGCTCGAGAAATATTTTCTAACACCCATGAGCTT
TTCACCCACGATACTATTCAACGCGAAAAGTCCCGCTTCAGCTCTGTTTT
AATATGTCAATAACCATCAGTTTGGAAACGCGTCTAGCAAAGCCGCTACT
GAATAAGGAGGAAACCAGAGAGAGAATGGCATGCGCCAATTGCCCATAAC
CAACAGACAGGCAACTCAACAGAGATTGAGTTGCCTTCTTGGTTTTCTTG
GTTTTGTAAACCAGTGAGAACCATGCTTTGACTGATAAGTAGTGAACAAC
TATGCAAAGGTTTAAGATGAGGCTTACTAAAGAAGCCATGTATGAATGGT
AATGAACATGTACACAAATGATGAACATGGAAGAAGAAGAAGAAGAATGA
TGATGATGAAGAAGAGAGAAGAAGAATGATGAGCTGGGAACACATAAACC
AACAACGAAATCTAACATAACATTGTCACGGTCATCATTATCAAAAGCTA
TAGCTTGGGACACTTTCTTTGATGATATAATTGTTCTTCTTGTTATACTT
TCAGAATCAATGGACTGCTGATCAGACACAGGAGTATGGAGAAAAGAGCG
AATTGCCATTTGTAGGAGTCCCAAAACTTGCAGAATGGGTCAGGAACTAT
GTTGAAAGTCTATCATCATAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1015:264009..266879+

>mRNA_H-akashiwo_Contig1015.5.1 ID=mRNA_H-akashiwo_Contig1015.5.1|Name=mRNA_H-akashiwo_Contig1015.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=315bp|location=Sequence derived from alignment at H-akashiwo_Contig1015:264009..266879+ (Heterosigma akashiwo CCMP452)
CAGGAGGGTCTGCTCCCGCTGTTTGGGGAGGGGCACGCCCGTCAACTGCC
CGTGGTGGTAACGGACGCCCTCCCGGCAAACCTCGAGCTCGCGCGCGCGC
TGGTGGCCGCCCTCGAGGAGCTGCCGCGCCCGCTCGTGCTCCAGTGCCGC
TCGGCCAACCGCGCCAGCGCCCCCCTGGCCATGTACCTTGCCAAGAAGAA
TCAATGGACTGCTGATCAGACACAGGAGTATGGAGAAAAGAGCGAATTGC
CATTTGTAGGAGTCCCAAAACTTGCAGAATGGGTCAGGAACTATGTTGAA
AGTCTATCATCATAA
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