mRNA_H-akashiwo_Contig1015.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1015.1.1
Unique NamemRNA_H-akashiwo_Contig1015.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1015.1.1 vs. uniprot
Match: A0A7S4DBF7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBF7_HETAK)

HSP 1 Score: 662 bits (1708), Expect = 1.230e-232
Identity = 406/408 (99.51%), Postives = 406/408 (99.51%), Query Frame = 1 
Query:   58 MVSFASSFAKLLCCVGFVLNIGCIDGYSHPFFSTRQAPIANSLSIVPASLGNATDFITAYALPEPQLVDSTSAPSGAGRRAFGQQLPPFKLQPSPLSKPASQLDVQPFGSLPTDDGGEEYSIEQGGSLSKEEAPLVSESAASLLENADYLEEPAQEXXXXXXXXXXXXXXXXXXXQSEKEKKNPSEKPSMVVDLNDMLDTTDSEDEDLPGKDSFATTEAEEMVAPAAAAIENEELETAVAATLENEGEMVAPVTVAXXXXXXXXXXXXXDEKEDDMFVRMGWARPITQYVTPLQPPPPPSTVEMPEDSTKQSGYSKRGADYADSVVKKSLALKARAMKKVAKAMGQSVAVLEMEEVIATPAEAVAVAEEIAXXXXXXXXEEVEISTHVAGIEGEVMAAPAAAVAQVVE 1281
            MVSFASSFAKLLCCVGFVLNIGCIDGYSHPFFSTRQAPIANSLSIVPASLGNATDFITAYALPEPQLVDSTSAPSGAGRRAFGQQLPPFKLQPSPLSKPASQLDVQPFGSLPTDDGGEEYSIEQGGSLSKEEAPLVSESAASLLENADYLEEPAQEXXXXXXXXXXXXXXXXXXXQSEKEKKNPSEKPSMVVDLNDMLDTTDSEDEDLPGKDSFATTEAEEMVAPAAAAIENEELETAVAATLENEGEMVAPVTVAXXXXXXXXXXXXXDEKEDDMFVRMGWARPITQYVTPLQPPPPPSTVEMPEDSTKQSGYSKRGADYADSVVKKSLALKARAMKKVAKAMGQSVAVLEMEEVIATPAEAVAVAEE  XXXXXXXXEEVEISTHVAGIEGEVMAAPAAAVAQVVE
Sbjct:    1 MVSFASSFAKLLCCVGFVLNIGCIDGYSHPFFSTRQAPIANSLSIVPASLGNATDFITAYALPEPQLVDSTSAPSGAGRRAFGQQLPPFKLQPSPLSKPASQLDVQPFGSLPTDDGGEEYSIEQGGSLSKEEAPLVSESAASLLENADYLEEPAQEXXXXXXXXXXXXXXXXXXXQSEKEKKNPSEKPSMVVDLNDMLDTTDSEDEDLPGKDSFATTEAEEMVAPAAAAIENEELETAVAATLENEGEMVAPVTVAXXXXXXXXXXXXXDEKEDDMFVRMGWARPITQYVTPLQPPPPPSTVEMPEDSTKQSGYSKRGADYADSVVKKSLALKARAMKKVAKAMGQSVAVLEMEEVIATPAEAVAVAEEXXXXXXXXXXEEVEISTHVAGIEGEVMAAPAAAVAQVVE 408
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1015.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DBF7_HETAK1.230e-23299.51Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1015contigH-akashiwo_Contig1015:59231..60729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1284
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1281
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387051.5725489-CDS-H-akashiwo_Contig1015:59230..603131681387051.5725489-CDS-H-akashiwo_Contig1015:59230..60313Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1015 59231..60313 +
1681387051.5827746-CDS-H-akashiwo_Contig1015:60529..607271681387051.5827746-CDS-H-akashiwo_Contig1015:60529..60727Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1015 60530..60727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1015.1.1prot_H-akashiwo_Contig1015.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1015 59231..60727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1015.1.1

>prot_H-akashiwo_Contig1015.1.1 ID=prot_H-akashiwo_Contig1015.1.1|Name=mRNA_H-akashiwo_Contig1015.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=427bp
TSLYPGSQSVRPTLFVLSGMVSFASSFAKLLCCVGFVLNIGCIDGYSHPF
FSTRQAPIANSLSIVPASLGNATDFITAYALPEPQLVDSTSAPSGAGRRA
FGQQLPPFKLQPSPLSKPASQLDVQPFGSLPTDDGGEEYSIEQGGSLSKE
EAPLVSESAASLLENADYLEEPAQEEVVALSASALHLLDNAEDLQSEKEK
KNPSEKPSMVVDLNDMLDTTDSEDEDLPGKDSFATTEAEEMVAPAAAAIE
NEELETAVAATLENEGEMVAPVTVAAAVEGEEAPAAAADEKEDDMFVRMG
WARPITQYVTPLQPPPPPSTVEMPEDSTKQSGYSKRGADYADSVVKKSLA
LKARAMKKVAKAMGQSVAVLEMEEVIATPAEAVAVAEEIAAPAAAVSVEE
VEISTHVAGIEGEVMAAPAAAVAQVVE
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mRNA from alignment at H-akashiwo_Contig1015:59231..60729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1015.1.1 ID=mRNA_H-akashiwo_Contig1015.1.1|Name=mRNA_H-akashiwo_Contig1015.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1499bp|location=Sequence derived from alignment at H-akashiwo_Contig1015:59231..60729+ (Heterosigma akashiwo CCMP452)
ACCAGCCTTTATCCGGGAAGCCAAAGTGTGAGGCCCACTTTATTCGTGCT
CAGCGGGATGGTGTCTTTTGCCAGCAGCTTCGCCAAATTGCTGTGCTGTG
TTGGTTTCGTATTGAACATCGGTTGCATAGATGGCTACTCTCATCCATTC
TTCAGCACGAGGCAAGCTCCGATCGCTAATTCGCTTTCGATAGTCCCCGC
CTCTCTCGGAAATGCAACCGACTTCATCACAGCGTACGCCCTTCCTGAGC
CTCAGTTGGTCGACAGTACCTCTGCGCCATCTGGAGCAGGAAGGCGGGCC
TTTGGCCAACAACTGCCCCCTTTCAAGTTGCAGCCTTCGCCTCTTTCGAA
ACCAGCATCTCAGTTGGATGTCCAGCCCTTTGGTAGTCTGCCCACAGACG
ACGGAGGGGAAGAATACAGTATCGAGCAAGGGGGGAGTTTGTCAAAGGAA
GAGGCACCTTTAGTGTCTGAAAGTGCGGCGTCCCTGCTCGAAAATGCAGA
TTATCTTGAGGAGCCTGCTCAAGAGGAGGTGGTGGCACTTTCTGCAAGTG
CCCTTCACCTTCTAGACAATGCAGAGGACCTGCAGTCAGAGAAGGAAAAA
AAGAATCCTTCTGAAAAGCCCTCCATGGTTGTGGACTTGAATGACATGCT
GGACACTACAGACAGCGAAGATGAGGACTTGCCTGGTAAGGATTCGTTTG
CCACCACTGAAGCTGAAGAGATGGTCGCTCCTGCTGCGGCAGCCATTGAG
AACGAGGAGCTGGAAACTGCAGTTGCAGCAACTCTTGAAAATGAGGGTGA
GATGGTAGCTCCTGTCACAGTTGCAGCAGCTGTTGAGGGAGAGGAAGCTC
CTGCTGCAGCAGCCGATGAAAAGGAGGATGACATGTTTGTGCGGATGGGT
TGGGCAAGGCCAATCACTCAATATGTTACACCACTGCAGCCCCCGCCCCC
TCCCTCTACGGTCGAGATGCCTGAAGACAGCACCAAACAATCTGGTTATT
CAAAGAGAGGTGCAGACTATGCAGATTCTGTGGTGAAGAAGAGCTTGGCG
CTGAAGGCCCGTGCCATGAAGAAAGTTGCAAAGGTAAGAGTTTACTGGAG
TGCGCGTACATTTTTTTTTAAAGTTTCCTTTTTCCAGCTTTCTTGGTGCA
CCATTTTATCTATTTGCAACAAACAGTGCCTGCACTTAACATCTGTGCCT
TGTCCTAGACATTTATATTCTTTGTCTAGATCACCTGTGCTATGAGGGAC
AGGAGTGACTCGATGTGTATTCTCCCTCTCTGTTCTCTCCACCCTTTAGG
CCATGGGCCAATCTGTAGCAGTGCTGGAAATGGAAGAGGTGATTGCCACA
CCAGCTGAGGCTGTTGCGGTGGCGGAGGAGATCGCCGCACCTGCTGCTGC
TGTCTCAGTGGAGGAGGTGGAGATTTCCACACATGTTGCTGGCATAGAAG
GGGAGGTGATGGCAGCGCCAGCGGCCGCGGTCGCCCAGGTGGTGGAAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1015:59231..60729+

>mRNA_H-akashiwo_Contig1015.1.1 ID=mRNA_H-akashiwo_Contig1015.1.1|Name=mRNA_H-akashiwo_Contig1015.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1281bp|location=Sequence derived from alignment at H-akashiwo_Contig1015:59231..60729+ (Heterosigma akashiwo CCMP452)
ACCAGCCTTTATCCGGGAAGCCAAAGTGTGAGGCCCACTTTATTCGTGCT
CAGCGGGATGGTGTCTTTTGCCAGCAGCTTCGCCAAATTGCTGTGCTGTG
TTGGTTTCGTATTGAACATCGGTTGCATAGATGGCTACTCTCATCCATTC
TTCAGCACGAGGCAAGCTCCGATCGCTAATTCGCTTTCGATAGTCCCCGC
CTCTCTCGGAAATGCAACCGACTTCATCACAGCGTACGCCCTTCCTGAGC
CTCAGTTGGTCGACAGTACCTCTGCGCCATCTGGAGCAGGAAGGCGGGCC
TTTGGCCAACAACTGCCCCCTTTCAAGTTGCAGCCTTCGCCTCTTTCGAA
ACCAGCATCTCAGTTGGATGTCCAGCCCTTTGGTAGTCTGCCCACAGACG
ACGGAGGGGAAGAATACAGTATCGAGCAAGGGGGGAGTTTGTCAAAGGAA
GAGGCACCTTTAGTGTCTGAAAGTGCGGCGTCCCTGCTCGAAAATGCAGA
TTATCTTGAGGAGCCTGCTCAAGAGGAGGTGGTGGCACTTTCTGCAAGTG
CCCTTCACCTTCTAGACAATGCAGAGGACCTGCAGTCAGAGAAGGAAAAA
AAGAATCCTTCTGAAAAGCCCTCCATGGTTGTGGACTTGAATGACATGCT
GGACACTACAGACAGCGAAGATGAGGACTTGCCTGGTAAGGATTCGTTTG
CCACCACTGAAGCTGAAGAGATGGTCGCTCCTGCTGCGGCAGCCATTGAG
AACGAGGAGCTGGAAACTGCAGTTGCAGCAACTCTTGAAAATGAGGGTGA
GATGGTAGCTCCTGTCACAGTTGCAGCAGCTGTTGAGGGAGAGGAAGCTC
CTGCTGCAGCAGCCGATGAAAAGGAGGATGACATGTTTGTGCGGATGGGT
TGGGCAAGGCCAATCACTCAATATGTTACACCACTGCAGCCCCCGCCCCC
TCCCTCTACGGTCGAGATGCCTGAAGACAGCACCAAACAATCTGGTTATT
CAAAGAGAGGTGCAGACTATGCAGATTCTGTGGTGAAGAAGAGCTTGGCG
CTGAAGGCCCGTGCCATGAAGAAAGTTGCAAAGGCCATGGGCCAATCTGT
AGCAGTGCTGGAAATGGAAGAGGTGATTGCCACACCAGCTGAGGCTGTTG
CGGTGGCGGAGGAGATCGCCGCACCTGCTGCTGCTGTCTCAGTGGAGGAG
GTGGAGATTTCCACACATGTTGCTGGCATAGAAGGGGAGGTGATGGCAGC
GCCAGCGGCCGCGGTCGCCCAGGTGGTGGAA
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