mRNA_H-akashiwo_Contig1014.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1014.7.1
Unique NamemRNA_H-akashiwo_Contig1014.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1014.7.1 vs. uniprot
Match: A0A6C0CR77_9ZZZZ (RING-type domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CR77_9ZZZZ)

HSP 1 Score: 65.9 bits (159), Expect = 8.030e-11
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 LESLEREVLEGDWGGYYESFRRPLIQRLDTIRETLGEAAPERAEDAFTRPAP 156
            L++LE ++L+ DWGGYYE++RRPLI+R+D IR +LG     R E  FT+P P
Sbjct:   36 LDALETDILQRDWGGYYENYRRPLIRRIDEIRASLGCEPKIRDERVFTQPGP 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1014.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6C0CR77_9ZZZZ8.030e-1153.85RING-type domain-containing protein n=1 Tax=viral ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1014contigH-akashiwo_Contig1014:346654..347281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size265
Hectar predicted targeting categoryother localisation
Exons3
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387051.441549-CDS-H-akashiwo_Contig1014:346653..3467561681387051.441549-CDS-H-akashiwo_Contig1014:346653..346756Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1014 346654..346756 -
1681387051.452074-CDS-H-akashiwo_Contig1014:346908..3469491681387051.452074-CDS-H-akashiwo_Contig1014:346908..346949Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1014 346909..346949 -
1681387051.461334-CDS-H-akashiwo_Contig1014:347161..3472811681387051.461334-CDS-H-akashiwo_Contig1014:347161..347281Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1014 347162..347281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1014.7.1prot_H-akashiwo_Contig1014.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1014 346654..347281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1014.7.1

>prot_H-akashiwo_Contig1014.7.1 ID=prot_H-akashiwo_Contig1014.7.1|Name=mRNA_H-akashiwo_Contig1014.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=88bp
LESLEREVLEGDWGGYYESFRRPLIQRLDTIRETLGEAAPERAEDAFTRP
APPRHGRRNWFESLISGFQAESSGAYELTLYDEGRYTD
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mRNA from alignment at H-akashiwo_Contig1014:346654..347281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1014.7.1 ID=mRNA_H-akashiwo_Contig1014.7.1|Name=mRNA_H-akashiwo_Contig1014.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=628bp|location=Sequence derived from alignment at H-akashiwo_Contig1014:346654..347281- (Heterosigma akashiwo CCMP452)
CTGGAATCACTAGAACGCGAGGTTTTGGAGGGAGACTGGGGAGGCTATTA
TGAATCATTTCGGAGGCCCTTGATCCAACGGTTGGATACTATTCGAGAAA
CATTAGGCGAAGCTGCCCCGGTAATCATGCGTTATCATATTTTCTGCAGC
AGAATGACCACGCCCATTATCTTGAAACTTCCAAAAACGGCCAATGCAAT
GCCTTTTCAGCCCTTCCCACCTTTTTTAATGTATCTAATTAAGTCATTCA
TATTATTTGCACCGAATCATCACTGCTTTTCCAAATACCATCCAGATGTT
CTTCTTTTTTTTTTTTTTGGTCTTTCCAACAGGAAAGAGCTGAAGATGCT
TTCACACGTCCAGCTCCTCCAAGGTGAGACGACTGTAGGATTCAATTGGT
CAAAAGCACAACAAAATATTTTGCTTTTCTAGCCCCATGGCGTACTATGG
CTGTTTCTGATCAGCTCAATGTTTTACCCCAATGCTCCCCAAAATATGTA
CTTCTGGCTCTTCTTCATCTTCCAGGCACGGCAGAAGAAATTGGTTTGAA
TCACTTATCTCTGGTTTTCAAGCTGAGTCTTCTGGGGCGTACGAGCTTAC
ATTATATGATGAGGGACGCTACACTGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1014:346654..347281-

>mRNA_H-akashiwo_Contig1014.7.1 ID=mRNA_H-akashiwo_Contig1014.7.1|Name=mRNA_H-akashiwo_Contig1014.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=264bp|location=Sequence derived from alignment at H-akashiwo_Contig1014:346654..347281- (Heterosigma akashiwo CCMP452)
CTGGAATCACTAGAACGCGAGGTTTTGGAGGGAGACTGGGGAGGCTATTA
TGAATCATTTCGGAGGCCCTTGATCCAACGGTTGGATACTATTCGAGAAA
CATTAGGCGAAGCTGCCCCGGAAAGAGCTGAAGATGCTTTCACACGTCCA
GCTCCTCCAAGGCACGGCAGAAGAAATTGGTTTGAATCACTTATCTCTGG
TTTTCAAGCTGAGTCTTCTGGGGCGTACGAGCTTACATTATATGATGAGG
GACGCTACACTGAC
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