mRNA_H-akashiwo_Contig1014.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-akashiwo_Contig1014.3.1
Unique Name	mRNA_H-akashiwo_Contig1014.3.1
Type	mRNA
Organism	Heterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)

Homology

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BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Match: A0A0G4FRW9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FRW9_VITBC)

HSP 1 Score: 79.3 bits (194), Expect = 1.420e-16
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1

Query:    1 VKVQK--GDAEDLEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKENKLHQKARFIF 183
            VK+ K  GDAE L DS DNFAVGG NRWKYDTFT+W+ YPS   PILVYFKE +   + +  F
Sbjct:  137 VKILKKDGDAETLADSGDNFAVGGANRWKYDTFTNWEMYPSPSLPILVYFKETQTIPEGQIHF 199

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BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Match: A0A836CR12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR12_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.200e-13
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1

Query:    1 VKVQKGDAEDLEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKENKLHQKARFIF 183
            VK+  G   DL DS +NFAVGG+NRW YDT+T+W+ YPSE  P+L+YFKE +     +  F
Sbjct:  116 VKIDAGKG-DLADSGENFAVGGQNRWAYDTWTNWEVYPSEALPVLMYFKETQTSPDGQIHF 175

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BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Match: K8Z8S9_NANGC (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z8S9_NANGC)

HSP 1 Score: 69.7 bits (169), Expect = 5.310e-13
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1

Query:   19 DAEDLEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKENKLHQKARFIF 183
            D + L   R+NFAVGG+NRW Y +FT+W+FYPSE+ P+LVYFKE +   + +  F
Sbjct:  130 DGQSLSMERENFAVGGRNRWTYASFTNWEFYPSEQVPVLVYFKETQTKPEGQIHF 184

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BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Match: A0A0G4GAP2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GAP2_9ALVE)

HSP 1 Score: 69.7 bits (169), Expect = 8.320e-13
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1

Query:   28 DLEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKENKLHQKARFIF 183
            DL DS +NFAVGG+NRW YDTF +W+ YPS E PILVYFKE +   + +  F
Sbjct:  157 DLTDSGENFAVGGQNRWNYDTFYNWEMYPSPENPILVYFKETQTKPEGQIHF 208

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BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Match: A0A7S2XVT8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVT8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.180e-12
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 1

Query:   31 LEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKENKLHQKARFIF 183
            L +S +NF VGG NRW YDTFT+W FYPS  FPILVYFKE +   + +  F
Sbjct:   69 LVNSGENFKVGGANRWDYDTFTNWVFYPSPSFPILVYFKETQTSPEGQIHF 119

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BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Match: A0A7S4J2C2_9EUKA (Hypothetical protein n=2 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J2C2_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.310e-12
Identity = 27/42 (64.29%), Postives = 37/42 (88.10%), Query Frame = 1

Query:   31 LEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKENK 156
            L+DS +NFAVGG+NRWKY +F +W+F+PSE+ P+LVYFKE +
Sbjct:  128 LKDSGENFAVGGENRWKYSSFVNWEFFPSEDLPVLVYFKETE 169

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BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Match: K0QYR0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QYR0_THAOC)

HSP 1 Score: 68.6 bits (166), Expect = 1.590e-12
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1

Query:   10 QKGDAEDLEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKENKLHQKARFIF 183
            Q G+ E L+DS +N  VGGKNRW Y++F +W+F+PS+EFPILVYFKE +     +  F
Sbjct:  131 QVGEGE-LDDSGENIVVGGKNRWSYESFVNWRFFPSKEFPILVYFKETQTSPDGQIHF 187

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BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Match: A0A4D9CZP5_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZP5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.260e-12
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1

Query:   19 DAEDLEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKENKLHQKARFIF 183
            D + L   R+NFAVGG+NRW Y +FT+W+FYPSE+ P+LVYFKE +   + +  F
Sbjct:  310 DGQSLSMERENFAVGGRNRWTYASFTNWEFYPSEQVPVLVYFKETQTKPEGQIHF 364

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BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Match: B8C1Y9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1Y9_THAPS)

HSP 1 Score: 67.8 bits (164), Expect = 3.600e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1

Query:    1 VKVQKGDAEDLEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKENK 156
            +K    D + L DS +N  VGG NRW YD+F +W FYPS +FPILVYFKE +
Sbjct:  132 LKAVDADTKQLADSGENIVVGGANRWSYDSFVNWDFYPSVDFPILVYFKETQ 183

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BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Match: L1JQC5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQC5_GUITC)

HSP 1 Score: 66.2 bits (160), Expect = 4.760e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1

Query:    1 VKVQKGDAEDLEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKENKLHQK 168
            +KV+    + L+DS +N  VGG NRWKY T+ ++ F+PS EFPILVYFKEN+  Q+
Sbjct:   57 LKVKGQSEQQLDDSGENIVVGGANRWKYPTWVNYDFFPSLEFPILVYFKENQTPQE 112

The following BLAST results are available for this feature:

BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot

BLAST of mRNA_H-akashiwo_Contig1014.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0G4FRW9_VITBC	1.420e-16	61.90	Uncharacterized protein n=2 Tax=Vitrella brassicaf...	[more]
A0A836CR12_9STRA	3.200e-13	52.46	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
K8Z8S9_NANGC	5.310e-13	52.73	Uncharacterized protein n=2 Tax=Nannochloropsis ga...	[more]
A0A0G4GAP2_9ALVE	8.320e-13	59.62	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]
A0A7S2XVT8_9STRA	1.180e-12	58.82	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S4J2C2_9EUKA	1.310e-12	64.29	Hypothetical protein n=2 Tax=Prymnesium polylepis ...	[more]
K0QYR0_THAOC	1.590e-12	53.45	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
A0A4D9CZP5_9STRA	2.260e-12	52.73	Sm domain-containing protein n=1 Tax=Nannochlorops...	[more]
B8C1Y9_THAPS	3.600e-12	55.77	Uncharacterized protein n=1 Tax=Thalassiosira pseu...	[more]
L1JQC5_GUITC	4.760e-12	53.57	Uncharacterized protein n=1 Tax=Guillardia theta (...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-akashiwo_Contig1014	contig	H-akashiwo_Contig1014:278968..282138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Heterosigma akashiwo CCMP452 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	159749.K0QYR0
PFAMs	DUF3119
Model size	203
Max annot lvl	2836\|Bacillariophyta
Hectar predicted targeting category	other localisation
Exons	2
Evalue	2.6e-13
EggNOG OGs	2CPJ9@1\|root,2R1VP@2759\|Eukaryota,2XFW7@2836\|Bacillariophyta
Description	Protein of unknown function (DUF3119)
Cds size	201
COG category	S

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681387051.536831-CDS-H-akashiwo_Contig1014:278967..279068	1681387051.536831-CDS-H-akashiwo_Contig1014:278967..279068	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig1014 278968..279068 +
1681387051.5456975-CDS-H-akashiwo_Contig1014:282038..282138	1681387051.5456975-CDS-H-akashiwo_Contig1014:282038..282138	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig1014 282039..282138 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-akashiwo_Contig1014.3.1	prot_H-akashiwo_Contig1014.3.1	Heterosigma akashiwo CCMP452	polypeptide	H-akashiwo_Contig1014 278968..282138 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-akashiwo_Contig1014:278968..282138+
coding sequence from alignment at H-akashiwo_Contig1014:278968..282138+

protein sequence of mRNA_H-akashiwo_Contig1014.3.1

>prot_H-akashiwo_Contig1014.3.1 ID=prot_H-akashiwo_Contig1014.3.1|Name=mRNA_H-akashiwo_Contig1014.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=67bp
VKVQKGDAEDLEDSRDNFAVGGKNRWKYDTFTHWQFYPSEEFPILVYFKE
NKLHQKARFIFSQSLR*

mRNA from alignment at H-akashiwo_Contig1014:278968..282138+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-akashiwo_Contig1014.3.1 ID=mRNA_H-akashiwo_Contig1014.3.1|Name=mRNA_H-akashiwo_Contig1014.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3171bp|location=Sequence derived from alignment at H-akashiwo_Contig1014:278968..282138+ (Heterosigma akashiwo CCMP452)
GTGAAAGTTCAAAAGGGGGATGCTGAAGATCTGGAAGACTCCCGGGATAA
TTTTGCTGTCGGTGGGAAAAACCGTTGGAAATACGATACTTTCACCCATT
GGTAAGTTTTCTTTTGTTTCACTGGATTAGATTTTGGCAAAAGGTGGGAG
AGGGTACTGCCCATTCATGTTTTTTAGGTGAGGAGGGACTTAGCTCATAA
AATCTATGGAGATCTGCTTAAGGTTGCTCAAAGTTTGGAGCTGCTTATTT
CAATATGTCTATATTTCTTCCTTTTCTTTCCGCTATACTTTTTCTTTCAG
TGACACACTGTCATTGCTCAGTTACCTCATTCTTCCATAGAGTTAAAAAA
AAAAAAAAAGCTGTGCTTGAGACATACAATCTCTCTCATTTTATGAACAT
ACTTTCTGTAGTATTCCTATTCCCGTCTTGAACAAACACCAAACAGTCTA
GGAATTCACACCAAAAGCAGCAAAGATGTTTGTCCAGTCAGTTAATTATC
AAAAAGAATTCAGAGAAACTTCCAGTGTTTTGTCAACGGGCTATACCAAT
GACCATTTCCAGTGTTGTCAACGGGCTATACCAATGACCATTATTTTAAA
TTAAACATGCCTTCTGCCGAAGTGAAGTGGGAGGGGAAAGGAGGGGAGGG
GGTCAGGCGCCGGGCTCCCCCAGCGGCGGCGCATCTTCACCGCCGCCGCC
GCCCCGCGGCACCCCCCAGGCACCTCGTCCTCGAAGATCATGATGAAAGA
TAATATAATCTAGATATATTATTATACTATTATTATTGTGGTATGAAAGA
GTATTTAATAATGATAATGTTTTTGAGGATTTATAGGCCAGGGCCACACT
ACTGCTATATCGCATGACGAAATACAACTTCATTGAACAGCATCATGAAT
AACTGGAGAGGTGTATCATTTTTTTTTTGTCTACATTTGTATCATGCAGT
GTGTTCCTCTGACTTCCTGAGCCACAACCAATGTCTTCTTGCGCGGGACA
TGGCTTCTGAGTACTTAAGCGGACAGCGTGTCGCTAGTGACCAGCGGAAG
CTCCACCTGCGCGAAGTCCTACATACTATGTTTTGCCCTTTGGACCAGAT
CCAGCCTTTCGGTTGTCTCATCCGTTGGCGTTTCCTCCGACAACCCACTA
CCATGATCAGTGCATCTGTCTCCACCCTGCGAGTCGAGGAAGTTCCCATA
GACGTTGCCAGTCTCCCTTATATGGGGACAAATGGGAGAAGAAAAATACA
ATCAGATCTTGGAGAGCTAATTTTGGCGCACTTTTTTTTTTCATTTCTGT
CTTCGCAGTCGGTGGAAAACGAAATTTCAAGAGAAATAAAATGGCGGCGA
CCACGCAGAAAGATGAACTTATAACGGCAGTATAGAATCTTCAGCATGAA
GCAGTGGGATTGCCAATGCAGGGGTACTGTTTTCCTTCCTCCTCAGATTT
TTTCATGTTGGGGACAGCAGCACCATTAGCAGCTGATGACGGCGGAGGCA
GAGCAACCACCATGAAGTGGTTTTTGTTCATCATTCCCAACCCAACCAGC
AAGATTGACAACCAGCCAGCAGCCTCTGCTGCTGGTGGCCTGGAATTGGC
CAAAACTTGAGTCTTTTGCTTGTTGGCCTGTTGTGTAGCTATTTTTTTAA
TAAAAAAATTTACATCTGCCTACTGTAATGATGGTGATGAGGGTGCCAAA
CTGAGTGATCAGTGATGGCAGTCTATCTAGTCAGACGTTAAAATGTGTCA
AGTAAGCTTTAGATAATAATGAATCTGGTCTCGACATGCTGGAAAACTAT
ATCAACTGTATCAAGGGGAGTGTTGGGCAAACAAGATTGTGGCCGCGACG
GCCGACGGGGTCTTGGCGACAAAGCTGGCAGAATCGCATATATAGCAGCA
CAAGAATAAATGTTGAAGAAGAAGATGATGAAATGGAACCTAGAAGGAGA
CCAGCAGAGCACCAAATGGTTTGTGGCTGCTGGACCGTCATCGTTCATAA
TTACCGCCTACTAATATATTGCAAGGAGCAATTGATCCAGGGTGGTCTAG
GGGGATAATCAAGGTGCCAAGAAGTGCACCGACAACATAAAGTTCCTACA
AGTTCAGGCCTGACCGGTTGGGGGACTCGGGCTGCCCCCACCAAGCCCTC
CTCCACCCCCCTGTACCCCCCGTCACCGCTGCCGCCGGTCTGCTGGTGCT
GCTGTTGCTGATTGTCAAACACGCCGACGGCGGTGTAGTTGCGCCCCCCC
ATAGTCTACTGCTTGTTCTGGGACTGTGCGGGTTATTCATGTGTCAAGGC
ATAACTTTCCGGGCTGTCTGGGTAGCTGGTAGAAGCTGGCAGTGCGAATC
CAGTTACCGGGCTCGCCCTTTGAGCTGCGGCAATCTGCTGCCTGGGACTA
CCGTAGTACTCTTGCTCCACTCCAGCTTTTTGGTTTACCATCCCCTGATT
ATGCTAGTGGTCGTCCAAGAAGGCTGATATGTTGACGTGCCTTGGGTGTC
TGCCCCTTAATGTTCAAATCCAGAGGAGGGCTCAGAGGAGGGCTCCTGCC
TCAGAGGTTCAAGTGGAGGACCAGTTGTCTACCTGCTATTATTGTGGCCA
TCAGGATTATGGCCCGTTCCAGATAAAGCCATTACTCTTGGTGGTCCAAG
CTCAGGCTCTCTATCTTGTTGTGTAGTTTCGGCTGTTTTTTTTTAAAGCG
ATTTGAAAGGCTATGTATGCCATAGATAGACTGTAAACTAACATAATAAT
TATCACATGCAGTATTTACTTTTGAACACCGCCTTCATTCCGAGGGTTTT
GATCACGAAAAGGGACCTGCTGTGATTTGAAATTTTCATCATTTTAAGGC
CGGGGGTGGTGGGCTGGCCCAGCCTAGTTTGGCCAGGTTTATACACTGAG
CTGGGAGGAAGGGGGATTTAAGAGCCCAAAGGCGGAGCTGGAGTGTTGAG
AGTGGTTGTAGCGGAAGGGGGCGTGAATAATCATTGACTGGTAATTCCAA
CAGGTGGTTGTTGATTCCAAATGAATTCCAACACTTTTTGATTCTTATAT
ATGATGGAATAATTTGATTAGGCAATTCTACCCATCTGAAGAATTTCCCA
TCCTGGTTTACTTTAAGGAAAACAAACTTCACCAGAAGGCCAGATTCATT
TTTTCCCAGTCCTTGCGGTAA

Coding sequence (CDS) from alignment at H-akashiwo_Contig1014:278968..282138+

>mRNA_H-akashiwo_Contig1014.3.1 ID=mRNA_H-akashiwo_Contig1014.3.1|Name=mRNA_H-akashiwo_Contig1014.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=201bp|location=Sequence derived from alignment at H-akashiwo_Contig1014:278968..282138+ (Heterosigma akashiwo CCMP452)
GTGAAAGTTCAAAAGGGGGATGCTGAAGATCTGGAAGACTCCCGGGATAA
TTTTGCTGTCGGTGGGAAAAACCGTTGGAAATACGATACTTTCACCCATT
GGCAATTCTACCCATCTGAAGAATTTCCCATCCTGGTTTACTTTAAGGAA
AACAAACTTCACCAGAAGGCCAGATTCATTTTTTCCCAGTCCTTGCGGTA
A